Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS29775

Experiment: L-Arabinose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose (C)
6,617,384	+		PFLU_RS29770	0.39	+1.1
6,617,384	+		PFLU_RS29770	0.39	+1.2
6,617,384	+		PFLU_RS29770	0.39	+0.4
6,617,384	+		PFLU_RS29770	0.39	+1.4
6,617,384	+		PFLU_RS29770	0.39	+1.4
6,617,385	-		PFLU_RS29770	0.39	+1.3
6,617,385	-		PFLU_RS29770	0.39	+2.2
6,617,417	+		PFLU_RS29770	0.42	+1.6
6,617,423	+		PFLU_RS29770	0.43	+0.2
6,617,423	+		PFLU_RS29770	0.43	+0.7
6,617,423	+		PFLU_RS29770	0.43	-0.1
6,617,424	-		PFLU_RS29770	0.43	-1.0
6,617,424	-		PFLU_RS29770	0.43	+0.2
6,617,424	-		PFLU_RS29770	0.43	-0.8
6,617,424	-		PFLU_RS29770	0.43	+2.0
6,617,442	+		PFLU_RS29770	0.45	+0.5
6,617,442	+		PFLU_RS29770	0.45	+0.9
6,617,443	-		PFLU_RS29770	0.45	+1.5
6,617,520	+		PFLU_RS29770	0.52	+0.1
6,617,521	-		PFLU_RS29770	0.53	-0.1
6,617,648	+		PFLU_RS29770	0.65	-0.3
6,617,648	+		PFLU_RS29770	0.65	+0.2
6,617,654	+		PFLU_RS29770	0.66	+0.5
6,617,654	+		PFLU_RS29770	0.66	+1.4
6,617,654	+		PFLU_RS29770	0.66	+0.4
6,617,655	-		PFLU_RS29770	0.66	+0.2
6,617,655	-		PFLU_RS29770	0.66	+2.0
6,617,655	-		PFLU_RS29770	0.66	+0.6
6,617,838	+		PFLU_RS29770	0.85	+0.1
6,617,838	+		PFLU_RS29770	0.85	-0.5
6,617,883	+		PFLU_RS29770	0.89	+0.1
6,617,883	+		PFLU_RS29770	0.89	-0.5
6,617,883	+		PFLU_RS29770	0.89	-0.8
6,617,883	+		PFLU_RS29770	0.89	+0.0
6,617,884	-		PFLU_RS29770	0.89	+1.7
6,617,884	-		PFLU_RS29770	0.89	+1.6
6,617,884	-		PFLU_RS29770	0.89	+0.9
6,617,888	+		PFLU_RS29770	0.90	+1.8
6,617,888	+		PFLU_RS29770	0.90	+2.0
6,617,888	+		PFLU_RS29770	0.90	+0.9
6,617,888	+		PFLU_RS29770	0.90	+0.0
6,617,888	+		PFLU_RS29770	0.90	+0.6
6,617,888	+		PFLU_RS29770	0.90	+1.3
6,617,889	-		PFLU_RS29770	0.90	+0.6
6,617,889	-		PFLU_RS29770	0.90	-0.3
6,617,889	-		PFLU_RS29770	0.90	+0.0
6,618,000	-				+0.4
6,618,006	+				+1.0
6,618,006	+				-1.2
6,618,006	+				+2.9
6,618,006	+				+0.2
6,618,006	+				+0.9
6,618,007	-				+0.6
6,618,012	+				-0.0
6,618,012	+				+1.6
6,618,012	+				-1.9
6,618,012	+				-1.6
6,618,012	+				-0.1
6,618,012	+				-0.4
6,618,012	+				+0.1
6,618,013	-				-0.4
6,618,013	-				+2.1
6,618,013	-				-1.3
6,618,013	-				+1.0
6,618,013	-				-0.5
6,618,013	-				-0.9
6,618,031	+				+0.6
6,618,055	+				-0.6
6,618,055	+				-0.9
6,618,055	+				+0.8
6,618,055	+				-0.1
6,618,055	+				-0.3
6,618,055	+				+0.1
6,618,055	+				-0.3
6,618,055	+				+0.5
6,618,055	+				+0.3
6,618,055	+				-1.0
6,618,056	-				-0.3
6,618,056	-				+0.7
6,618,056	-				+0.4
6,618,056	-				-1.7
6,618,056	-				-1.2
6,618,056	-				-0.9
6,618,056	-				+1.4
6,618,056	-				+1.4
6,618,056	-				-1.4
6,618,075	+				-0.4
6,618,075	+				-2.0
6,618,076	-				-1.4
6,618,076	-				+0.0
6,618,076	-				+0.2
6,618,076	-				-1.9
6,618,076	-				-2.3
6,618,091	-				+0.1
6,618,091	-				+0.5
6,618,108	+				-0.4
6,618,108	+				-0.8
6,618,108	+				-1.1
6,618,108	+				-2.4
6,618,108	+				+0.6
6,618,108	+				-1.8
6,618,109	-				+0.3
6,618,109	-				+0.2
6,618,109	-				-0.0
6,618,109	-				+1.4
6,618,109	-				-2.1
6,618,109	-				-0.8
6,618,109	-				+1.3
6,618,109	-				+0.9
6,618,122	+				+0.8
6,618,123	-				-0.9
6,618,323	+				+0.8
6,618,323	+				+1.2
6,618,323	+				+2.0
6,618,323	+				+0.9
6,618,323	+				+0.7
6,618,323	+				+0.3
6,618,323	+				+1.0
6,618,323	+				+0.6
6,618,323	+				-1.3
6,618,323	+				+2.4
6,618,323	+				+0.1
6,618,323	+				+1.0
6,618,323	+				+1.0
6,618,323	+				+0.7
6,618,323	+				+1.0
6,618,323	+				+0.6
6,618,324	-				+0.7
6,618,324	-				+1.2
6,618,324	-				+1.0
6,618,324	-				-0.4
6,618,324	-				+1.1
6,618,324	-				+0.4
6,618,324	-				+1.0
6,618,324	-				-0.6
6,618,324	-				+0.6
6,618,324	-				-0.6
6,618,324	-				-0.1
6,618,324	-				-0.4
6,618,324	-				-0.1
6,618,327	+				-1.5
6,618,327	+				+0.4
6,618,327	+				+0.6
6,618,327	+				-0.4
6,618,327	+				-0.3
6,618,327	+				+1.9
6,618,327	+				+0.3
6,618,327	+				+0.0
6,618,327	+				-0.7
6,618,327	+				+1.6
6,618,327	+				+0.7
6,618,327	+				+2.6
6,618,327	+				+0.8
6,618,327	+				+0.4
6,618,328	-				+0.6
6,618,328	-				-0.4
6,618,328	-				+1.4
6,618,328	-				+1.3
6,618,328	-				+1.8
6,618,328	-				-1.3
6,618,328	-				+0.9
6,618,328	-				-0.6
6,618,328	-				+1.3
6,618,328	-				-2.1
6,618,328	-				+0.2
6,618,328	-				+1.3
6,618,328	-				-1.6
6,618,328	-				+0.0
6,618,328	-				+0.4
6,618,328	-				+1.6
6,618,328	-				+0.2
6,618,330	+				-1.3
6,618,330	+				-1.8
6,618,331	-				+0.1
6,618,403	-		PFLU_RS29775	0.11	+1.7
6,618,414	+		PFLU_RS29775	0.12	+1.3
6,618,414	+		PFLU_RS29775	0.12	+0.7
6,618,414	+		PFLU_RS29775	0.12	+0.9
6,618,415	-		PFLU_RS29775	0.12	-0.1
6,618,415	-		PFLU_RS29775	0.12	+0.8
6,618,415	-		PFLU_RS29775	0.12	-0.4
6,618,415	-		PFLU_RS29775	0.12	+0.2
6,618,415	-		PFLU_RS29775	0.12	-0.8
6,618,415	-		PFLU_RS29775	0.12	-1.0
6,618,415	-		PFLU_RS29775	0.12	-0.6
6,618,467	+		PFLU_RS29775	0.16	+0.6
6,618,467	+		PFLU_RS29775	0.16	+0.7
6,618,467	+		PFLU_RS29775	0.16	-1.2
6,618,467	+		PFLU_RS29775	0.16	+1.4
6,618,467	+		PFLU_RS29775	0.16	+2.6
6,618,467	+		PFLU_RS29775	0.16	+0.3
6,618,467	+		PFLU_RS29775	0.16	-2.3
6,618,467	+		PFLU_RS29775	0.16	+0.8
6,618,467	+		PFLU_RS29775	0.16	+1.4
6,618,467	+		PFLU_RS29775	0.16	+0.9
6,618,467	+		PFLU_RS29775	0.16	-0.3
6,618,467	+		PFLU_RS29775	0.16	+0.4
6,618,467	+		PFLU_RS29775	0.16	+1.1
6,618,467	+		PFLU_RS29775	0.16	-0.9
6,618,467	+		PFLU_RS29775	0.16	+1.1
6,618,467	+		PFLU_RS29775	0.16	+1.7
6,618,467	+		PFLU_RS29775	0.16	+1.0
6,618,468	-		PFLU_RS29775	0.16	+0.4
6,618,468	-		PFLU_RS29775	0.16	-0.0
6,618,468	-		PFLU_RS29775	0.16	+0.9
6,618,468	-		PFLU_RS29775	0.16	-1.0
6,618,468	-		PFLU_RS29775	0.16	+0.9
6,618,468	-		PFLU_RS29775	0.16	-0.2
6,618,468	-		PFLU_RS29775	0.16	+0.9
6,618,468	-		PFLU_RS29775	0.16	+0.6
6,618,468	-		PFLU_RS29775	0.16	+2.8
6,618,468	-		PFLU_RS29775	0.16	-0.0
6,618,468	-		PFLU_RS29775	0.16	-0.4
6,618,468	-		PFLU_RS29775	0.16	-0.3
6,618,468	-		PFLU_RS29775	0.16	+0.5
6,618,468	-		PFLU_RS29775	0.16	-0.6
6,618,468	-		PFLU_RS29775	0.16	+0.5
6,618,468	-		PFLU_RS29775	0.16	+0.1
6,618,468	-		PFLU_RS29775	0.16	+0.9
6,618,468	-		PFLU_RS29775	0.16	-0.4
6,618,471	+		PFLU_RS29775	0.16	-1.8
6,618,471	+		PFLU_RS29775	0.16	+0.8
6,618,471	+		PFLU_RS29775	0.16	-0.6
6,618,471	+		PFLU_RS29775	0.16	-0.1
6,618,471	+		PFLU_RS29775	0.16	-1.1
6,618,471	+		PFLU_RS29775	0.16	+0.2
6,618,472	-		PFLU_RS29775	0.16	+1.5
6,618,472	-		PFLU_RS29775	0.16	+1.2
6,618,472	-		PFLU_RS29775	0.16	+1.3
6,618,472	-		PFLU_RS29775	0.16	+0.4
6,618,472	-		PFLU_RS29775	0.16	-0.6
6,618,472	-		PFLU_RS29775	0.16	+0.0
6,618,472	-		PFLU_RS29775	0.16	+0.7
6,618,516	+		PFLU_RS29775	0.20	-3.8
6,618,516	+		PFLU_RS29775	0.20	-0.4
6,618,516	+		PFLU_RS29775	0.20	+0.8
6,618,517	-		PFLU_RS29775	0.20	-1.6
6,618,517	-		PFLU_RS29775	0.20	+0.6
6,618,517	-		PFLU_RS29775	0.20	-2.0
6,618,517	-		PFLU_RS29775	0.20	+0.7
6,618,718	-		PFLU_RS29775	0.35	+2.6
6,618,915	+		PFLU_RS29775	0.51	+0.2
6,618,916	-		PFLU_RS29775	0.51	+1.1
6,618,991	+		PFLU_RS29775	0.56	+1.8
6,618,991	+		PFLU_RS29775	0.56	-0.6
6,618,991	+		PFLU_RS29775	0.56	+1.8
6,618,991	+		PFLU_RS29775	0.56	-0.7
6,618,993	+		PFLU_RS29775	0.57	-0.5
6,618,993	+		PFLU_RS29775	0.57	+0.9
6,618,993	+		PFLU_RS29775	0.57	-0.9
6,618,994	-		PFLU_RS29775	0.57	+0.9
6,618,994	-		PFLU_RS29775	0.57	-0.8
6,618,994	-		PFLU_RS29775	0.57	+1.5
6,618,994	-		PFLU_RS29775	0.57	+0.3
6,619,075	-		PFLU_RS29775	0.63	-1.5
6,619,095	-		PFLU_RS29775	0.64	+0.3
6,619,206	+		PFLU_RS29775	0.73	+0.2
6,619,206	+		PFLU_RS29775	0.73	-0.1
6,619,206	+		PFLU_RS29775	0.73	+1.6
6,619,206	+		PFLU_RS29775	0.73	+0.3
6,619,207	-		PFLU_RS29775	0.73	-0.1
6,619,207	-		PFLU_RS29775	0.73	+0.2
6,619,335	+		PFLU_RS29775	0.83	-1.0
6,619,449	+				+0.5
6,619,449	+				-0.5
6,619,567	+				+0.2
6,619,567	+				+1.6
6,619,567	+				+0.0
6,619,567	+				+0.4
6,619,567	+				+1.0
6,619,568	-				-0.5
6,619,568	-				+0.3
6,619,568	-				-1.0
6,619,568	-				-0.7
6,619,568	-				-0.7
6,619,568	-				+0.3
6,619,568	-				+0.3
6,619,568	-				-0.1
6,619,568	-				+1.1
6,619,568	-				-2.4
6,619,569	+				+0.7
6,619,569	+				-0.5
6,619,569	+				+1.1
6,619,569	+				+0.9
6,619,569	+				+0.1
6,619,569	+				+1.7
6,619,569	+				-0.8
6,619,569	+				+0.3
6,619,569	+				-2.5
6,619,569	+				-0.5
6,619,569	+				+0.3
6,619,569	+				+0.9
6,619,569	+				-0.0
6,619,570	-				+0.5
6,619,570	-				+1.0
6,619,570	-				+0.7
6,619,570	-				+0.8
6,619,570	-				-0.3
6,619,570	-				-0.6
6,619,570	-				+0.3
6,619,570	-				-0.9
6,619,570	-				+0.6
6,619,570	-				+0.6
6,619,570	-				+0.7
6,619,570	-				-0.4
6,619,570	-				-2.7
6,619,570	-				-0.1
6,619,570	-				+0.6
6,619,570	-				-1.0
6,619,570	-				+0.1
6,619,570	-				-2.0
6,619,573	-				-1.2
6,619,573	-				-0.5
6,619,573	-				-0.8
6,619,573	-				+0.5
6,619,625	-				+0.7
6,619,625	-				-2.7
6,619,638	+				-1.4
6,619,638	+				-0.4
6,619,683	-				-1.7
6,619,691	+				-2.1
6,619,691	+				-1.1
6,619,696	-				-1.7
6,619,745	+				-0.0
6,619,745	+				+0.7
6,619,745	+				-2.9
6,619,746	-				+2.2
6,619,746	-				-1.3
6,619,746	-				+0.5
6,619,842	+				+0.6
6,619,842	+				+2.0
6,619,842	+				-0.8
6,619,843	-				+2.7
6,619,843	-				+2.6
6,619,845	+				-1.8
6,619,846	-				+2.7
6,619,846	-				+3.6
6,619,846	-				+1.6
6,619,846	-				+2.3
6,619,846	-				+2.0
6,619,846	-				+1.7
6,619,846	-				+0.3
6,619,852	+				-0.7
6,619,875	+				-0.0
6,619,875	+				-0.5
6,619,875	+				+0.0
6,619,875	+				-1.0
6,619,875	+				+1.1
6,619,875	+				-0.3
6,619,875	+				+1.8
6,619,875	+				-0.5
6,619,875	+				-0.9
6,619,875	+				+0.4
6,619,875	+				-0.4
6,619,875	+				+1.4
6,619,875	+				+0.2
6,619,875	+				-1.0
6,619,876	-				+1.8
6,619,876	-				+4.4
6,619,876	-				+4.9
6,619,876	-				+1.9
6,619,876	-				+2.1
6,619,876	-				+2.3
6,619,876	-				+2.6
6,619,876	-				-0.1
6,619,876	-				+4.3
6,619,876	-				+3.6
6,619,876	-				+2.4
6,619,876	-				+3.6
6,619,876	-				+3.7
6,619,876	-				+2.8
6,619,876	-				+3.2
6,619,876	-				+3.5
6,619,876	-				+3.0
6,619,923	+				+2.2
6,619,923	+				+2.4
6,619,923	+				+3.7
6,619,923	+				+3.1
6,619,924	-				+1.6
6,619,924	-				+3.1
6,619,924	-				+2.7
6,619,924	-				+2.7
6,619,985	+				+2.8
6,620,142	-		PFLU_RS29780	0.45	+3.0
6,620,196	+		PFLU_RS29780	0.59	+3.5
6,620,196	+		PFLU_RS29780	0.59	+4.3
6,620,196	+		PFLU_RS29780	0.59	+4.0
6,620,196	+		PFLU_RS29780	0.59	+2.0
6,620,196	+		PFLU_RS29780	0.59	+3.5
6,620,196	+		PFLU_RS29780	0.59	+3.0
6,620,197	-		PFLU_RS29780	0.59	+2.4
6,620,197	-		PFLU_RS29780	0.59	+1.8
6,620,197	-		PFLU_RS29780	0.59	+4.9
6,620,197	-		PFLU_RS29780	0.59	+3.1
6,620,197	-		PFLU_RS29780	0.59	+2.8
6,620,197	-		PFLU_RS29780	0.59	+2.7
6,620,197	-		PFLU_RS29780	0.59	+2.3
6,620,305	+		PFLU_RS29780	0.85	+2.3
6,620,306	-		PFLU_RS29780	0.86	+1.6
6,620,362	-				+1.9
6,620,407	+				-0.1
6,620,407	+				+0.6
6,620,407	+				+1.2
6,620,407	+				-0.6
6,620,407	+				+1.0
6,620,407	+				-3.3
6,620,407	+				-0.0
6,620,408	-				+1.6
6,620,408	-				+1.9
6,620,408	-				+0.0
6,620,420	+				+0.0
6,620,420	+				-0.6
6,620,420	+				+1.0
6,620,421	-				-0.1
6,620,421	-				+0.7
6,620,421	-				+1.8
6,620,421	-				+1.2
6,620,426	+				-0.4
6,620,426	+				+0.1
6,620,427	-				-2.5
6,620,427	-				+0.2
6,620,522	+		PFLU_RS29785	0.11	+1.8
6,620,522	+		PFLU_RS29785	0.11	-2.0
6,620,522	+		PFLU_RS29785	0.11	+0.7
6,620,522	+		PFLU_RS29785	0.11	-1.5
6,620,522	+		PFLU_RS29785	0.11	-1.9
6,620,522	+		PFLU_RS29785	0.11	-0.3
6,620,522	+		PFLU_RS29785	0.11	+1.6
6,620,522	+		PFLU_RS29785	0.11	+0.9
6,620,522	+		PFLU_RS29785	0.11	+1.4
6,620,522	+		PFLU_RS29785	0.11	-0.3
6,620,522	+		PFLU_RS29785	0.11	+0.7
6,620,522	+		PFLU_RS29785	0.11	+0.2
6,620,522	+		PFLU_RS29785	0.11	+0.0
6,620,522	+		PFLU_RS29785	0.11	+0.6
6,620,522	+		PFLU_RS29785	0.11	-0.3
6,620,522	+		PFLU_RS29785	0.11	+1.4
6,620,522	+		PFLU_RS29785	0.11	-1.8
6,620,522	+		PFLU_RS29785	0.11	-2.3
6,620,522	+		PFLU_RS29785	0.11	-1.4
6,620,522	+		PFLU_RS29785	0.11	-1.6
6,620,522	+		PFLU_RS29785	0.11	+0.7
6,620,522	+		PFLU_RS29785	0.11	+0.8
6,620,522	+		PFLU_RS29785	0.11	+0.5
6,620,523	-		PFLU_RS29785	0.11	+0.1
6,620,523	-		PFLU_RS29785	0.11	+0.7
6,620,523	-		PFLU_RS29785	0.11	-1.7
6,620,523	-		PFLU_RS29785	0.11	+1.0
6,620,523	-		PFLU_RS29785	0.11	-0.3
6,620,523	-		PFLU_RS29785	0.11	-1.1
6,620,523	-		PFLU_RS29785	0.11	+2.2
6,620,523	-		PFLU_RS29785	0.11	-0.6
6,620,523	-		PFLU_RS29785	0.11	+0.4
6,620,523	-		PFLU_RS29785	0.11	+0.7
6,620,523	-		PFLU_RS29785	0.11	+1.6
6,620,523	-		PFLU_RS29785	0.11	-0.1
6,620,523	-		PFLU_RS29785	0.11	-0.2
6,620,523	-		PFLU_RS29785	0.11	+0.9
6,620,523	-		PFLU_RS29785	0.11	-1.1
6,620,523	-		PFLU_RS29785	0.11	-1.0
6,620,523	-		PFLU_RS29785	0.11	+1.7
6,620,523	-		PFLU_RS29785	0.11	+1.0
6,620,523	-		PFLU_RS29785	0.11	-2.4
6,620,523	-		PFLU_RS29785	0.11	-0.1
6,620,523	-		PFLU_RS29785	0.11	+0.6
6,620,523	-		PFLU_RS29785	0.11	-0.9
6,620,524	+		PFLU_RS29785	0.11	-0.4
6,620,524	+		PFLU_RS29785	0.11	-2.1
6,620,524	+		PFLU_RS29785	0.11	-1.2
6,620,524	+		PFLU_RS29785	0.11	+0.7
6,620,524	+		PFLU_RS29785	0.11	-1.1
6,620,524	+		PFLU_RS29785	0.11	+0.2
6,620,524	+		PFLU_RS29785	0.11	-0.1
6,620,524	+		PFLU_RS29785	0.11	+0.6
6,620,524	+		PFLU_RS29785	0.11	-0.1
6,620,524	+		PFLU_RS29785	0.11	-1.4
6,620,524	+		PFLU_RS29785	0.11	-0.5
6,620,524	+		PFLU_RS29785	0.11	-0.4
6,620,524	+		PFLU_RS29785	0.11	-2.9
6,620,524	+		PFLU_RS29785	0.11	+0.1
6,620,524	+		PFLU_RS29785	0.11	-2.1
6,620,524	+		PFLU_RS29785	0.11	+1.1
6,620,525	-		PFLU_RS29785	0.12	+2.0
6,620,525	-		PFLU_RS29785	0.12	+0.9
6,620,525	-		PFLU_RS29785	0.12	+0.9
6,620,525	-		PFLU_RS29785	0.12	-0.6
6,620,525	-		PFLU_RS29785	0.12	+2.1
6,620,533	-		PFLU_RS29785	0.12	+0.4