Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS23855

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS23850 and PFLU_RS23855 overlap by 4 nucleotidesPFLU_RS23855 and PFLU_RS23860 are separated by 92 nucleotides PFLU_RS23850: PFLU_RS23850 - MFS transporter, at 5,345,831 to 5,347,027 _RS23850 PFLU_RS23855: PFLU_RS23855 - aminoacyl-tRNA hydrolase, at 5,347,024 to 5,347,437 _RS23855 PFLU_RS23860: PFLU_RS23860 - hypothetical protein, at 5,347,530 to 5,348,696 _RS23860 Position (kb) 5347 5348Strain fitness (log2 ratio) -2 -1 0 1 2at 5346.029 kb on + strand, within PFLU_RS23850at 5346.184 kb on - strand, within PFLU_RS23850at 5346.327 kb on + strand, within PFLU_RS23850at 5346.327 kb on + strand, within PFLU_RS23850at 5346.327 kb on + strand, within PFLU_RS23850at 5346.327 kb on + strand, within PFLU_RS23850at 5346.475 kb on - strand, within PFLU_RS23850at 5346.475 kb on - strand, within PFLU_RS23850at 5346.545 kb on + strand, within PFLU_RS23850at 5346.545 kb on + strand, within PFLU_RS23850at 5346.545 kb on + strand, within PFLU_RS23850at 5346.545 kb on + strand, within PFLU_RS23850at 5346.545 kb on + strand, within PFLU_RS23850at 5346.545 kb on + strand, within PFLU_RS23850at 5346.545 kb on + strand, within PFLU_RS23850at 5346.546 kb on - strand, within PFLU_RS23850at 5346.548 kb on + strand, within PFLU_RS23850at 5346.548 kb on + strand, within PFLU_RS23850at 5346.548 kb on + strand, within PFLU_RS23850at 5346.548 kb on + strand, within PFLU_RS23850at 5346.548 kb on + strand, within PFLU_RS23850at 5346.548 kb on + strand, within PFLU_RS23850at 5346.548 kb on + strand, within PFLU_RS23850at 5346.548 kb on + strand, within PFLU_RS23850at 5346.548 kb on + strand, within PFLU_RS23850at 5346.548 kb on + strand, within PFLU_RS23850at 5346.548 kb on + strand, within PFLU_RS23850at 5346.548 kb on + strand, within PFLU_RS23850at 5346.548 kb on + strand, within PFLU_RS23850at 5346.548 kb on + strand, within PFLU_RS23850at 5346.549 kb on - strand, within PFLU_RS23850at 5346.549 kb on - strand, within PFLU_RS23850at 5346.549 kb on - strand, within PFLU_RS23850at 5346.549 kb on - strand, within PFLU_RS23850at 5346.549 kb on - strand, within PFLU_RS23850at 5346.549 kb on - strand, within PFLU_RS23850at 5346.549 kb on - strand, within PFLU_RS23850at 5346.549 kb on - strand, within PFLU_RS23850at 5346.621 kb on + strand, within PFLU_RS23850at 5346.621 kb on + strand, within PFLU_RS23850at 5346.622 kb on - strand, within PFLU_RS23850at 5346.848 kb on + strand, within PFLU_RS23850at 5346.849 kb on - strand, within PFLU_RS23850at 5346.860 kb on - strand, within PFLU_RS23850at 5346.966 kb on + strandat 5346.967 kb on - strandat 5346.980 kb on + strandat 5346.980 kb on + strandat 5346.980 kb on + strandat 5346.980 kb on + strandat 5346.980 kb on + strandat 5346.980 kb on + strandat 5346.981 kb on - strandat 5346.987 kb on - strandat 5347.025 kb on + strandat 5347.026 kb on - strandat 5347.283 kb on + strand, within PFLU_RS23855at 5347.283 kb on + strand, within PFLU_RS23855at 5347.283 kb on + strand, within PFLU_RS23855at 5347.283 kb on + strand, within PFLU_RS23855at 5347.283 kb on + strand, within PFLU_RS23855at 5347.284 kb on - strand, within PFLU_RS23855at 5347.284 kb on - strand, within PFLU_RS23855at 5347.312 kb on - strand, within PFLU_RS23855at 5347.312 kb on - strand, within PFLU_RS23855at 5347.470 kb on + strandat 5347.471 kb on - strandat 5347.491 kb on + strandat 5347.491 kb on + strandat 5347.491 kb on + strandat 5347.491 kb on + strandat 5347.491 kb on + strandat 5347.491 kb on + strandat 5347.491 kb on + strandat 5347.491 kb on + strandat 5347.492 kb on - strandat 5347.492 kb on - strandat 5347.492 kb on - strandat 5347.492 kb on - strandat 5347.492 kb on - strandat 5347.492 kb on - strandat 5347.492 kb on - strandat 5347.492 kb on - strandat 5347.492 kb on - strandat 5347.733 kb on - strand, within PFLU_RS23860at 5347.733 kb on - strand, within PFLU_RS23860at 5347.848 kb on + strand, within PFLU_RS23860at 5347.848 kb on + strand, within PFLU_RS23860at 5347.848 kb on + strand, within PFLU_RS23860at 5347.848 kb on + strand, within PFLU_RS23860at 5347.848 kb on + strand, within PFLU_RS23860at 5347.848 kb on + strand, within PFLU_RS23860at 5347.848 kb on + strand, within PFLU_RS23860at 5347.848 kb on + strand, within PFLU_RS23860at 5347.848 kb on + strand, within PFLU_RS23860at 5347.848 kb on + strand, within PFLU_RS23860at 5347.848 kb on + strand, within PFLU_RS23860at 5347.848 kb on + strand, within PFLU_RS23860at 5347.849 kb on - strand, within PFLU_RS23860at 5347.849 kb on - strand, within PFLU_RS23860at 5347.849 kb on - strand, within PFLU_RS23860at 5347.849 kb on - strand, within PFLU_RS23860at 5347.849 kb on - strand, within PFLU_RS23860at 5347.849 kb on - strand, within PFLU_RS23860at 5347.849 kb on - strand, within PFLU_RS23860at 5347.849 kb on - strand, within PFLU_RS23860at 5347.849 kb on - strand, within PFLU_RS23860at 5347.849 kb on - strand, within PFLU_RS23860at 5347.861 kb on + strand, within PFLU_RS23860at 5347.862 kb on - strand, within PFLU_RS23860at 5347.901 kb on + strand, within PFLU_RS23860at 5348.044 kb on + strand, within PFLU_RS23860at 5348.044 kb on + strand, within PFLU_RS23860at 5348.044 kb on + strand, within PFLU_RS23860at 5348.045 kb on - strand, within PFLU_RS23860at 5348.045 kb on - strand, within PFLU_RS23860at 5348.045 kb on - strand, within PFLU_RS23860at 5348.045 kb on - strand, within PFLU_RS23860at 5348.106 kb on - strand, within PFLU_RS23860at 5348.172 kb on + strand, within PFLU_RS23860at 5348.172 kb on + strand, within PFLU_RS23860at 5348.173 kb on - strand, within PFLU_RS23860at 5348.173 kb on - strand, within PFLU_RS23860at 5348.173 kb on - strand, within PFLU_RS23860at 5348.195 kb on + strand, within PFLU_RS23860at 5348.195 kb on + strand, within PFLU_RS23860at 5348.196 kb on - strand, within PFLU_RS23860at 5348.196 kb on - strand, within PFLU_RS23860at 5348.203 kb on + strand, within PFLU_RS23860at 5348.204 kb on - strand, within PFLU_RS23860at 5348.204 kb on - strand, within PFLU_RS23860at 5348.204 kb on - strand, within PFLU_RS23860at 5348.204 kb on - strand, within PFLU_RS23860at 5348.204 kb on - strand, within PFLU_RS23860at 5348.204 kb on - strand, within PFLU_RS23860at 5348.204 kb on - strand, within PFLU_RS23860at 5348.232 kb on + strand, within PFLU_RS23860at 5348.232 kb on + strand, within PFLU_RS23860at 5348.233 kb on - strand, within PFLU_RS23860at 5348.233 kb on - strand, within PFLU_RS23860at 5348.233 kb on - strand, within PFLU_RS23860at 5348.342 kb on + strand, within PFLU_RS23860at 5348.342 kb on + strand, within PFLU_RS23860at 5348.342 kb on + strand, within PFLU_RS23860at 5348.342 kb on + strand, within PFLU_RS23860at 5348.342 kb on + strand, within PFLU_RS23860at 5348.342 kb on + strand, within PFLU_RS23860at 5348.342 kb on + strand, within PFLU_RS23860at 5348.342 kb on + strand, within PFLU_RS23860at 5348.342 kb on + strand, within PFLU_RS23860at 5348.342 kb on + strand, within PFLU_RS23860at 5348.342 kb on + strand, within PFLU_RS23860at 5348.342 kb on + strand, within PFLU_RS23860at 5348.342 kb on + strand, within PFLU_RS23860at 5348.342 kb on + strand, within PFLU_RS23860at 5348.342 kb on + strand, within PFLU_RS23860at 5348.343 kb on - strand, within PFLU_RS23860at 5348.343 kb on - strand, within PFLU_RS23860at 5348.343 kb on - strand, within PFLU_RS23860at 5348.343 kb on - strand, within PFLU_RS23860at 5348.343 kb on - strand, within PFLU_RS23860at 5348.343 kb on - strand, within PFLU_RS23860at 5348.343 kb on - strand, within PFLU_RS23860at 5348.343 kb on - strand, within PFLU_RS23860at 5348.343 kb on - strand, within PFLU_RS23860at 5348.343 kb on - strand, within PFLU_RS23860at 5348.343 kb on - strand, within PFLU_RS23860at 5348.343 kb on - strand, within PFLU_RS23860

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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5,346,029 + PFLU_RS23850 0.17 -2.1
5,346,184 - PFLU_RS23850 0.29 -1.1
5,346,327 + PFLU_RS23850 0.41 +1.9
5,346,327 + PFLU_RS23850 0.41 -0.6
5,346,327 + PFLU_RS23850 0.41 +0.7
5,346,327 + PFLU_RS23850 0.41 +1.0
5,346,475 - PFLU_RS23850 0.54 +0.6
5,346,475 - PFLU_RS23850 0.54 -0.6
5,346,545 + PFLU_RS23850 0.60 -0.6
5,346,545 + PFLU_RS23850 0.60 +2.7
5,346,545 + PFLU_RS23850 0.60 -0.9
5,346,545 + PFLU_RS23850 0.60 +0.4
5,346,545 + PFLU_RS23850 0.60 +1.8
5,346,545 + PFLU_RS23850 0.60 +0.6
5,346,545 + PFLU_RS23850 0.60 -1.4
5,346,546 - PFLU_RS23850 0.60 +0.7
5,346,548 + PFLU_RS23850 0.60 -2.5
5,346,548 + PFLU_RS23850 0.60 +2.4
5,346,548 + PFLU_RS23850 0.60 -0.4
5,346,548 + PFLU_RS23850 0.60 -0.1
5,346,548 + PFLU_RS23850 0.60 +1.6
5,346,548 + PFLU_RS23850 0.60 -2.4
5,346,548 + PFLU_RS23850 0.60 +0.3
5,346,548 + PFLU_RS23850 0.60 -0.2
5,346,548 + PFLU_RS23850 0.60 -1.8
5,346,548 + PFLU_RS23850 0.60 -0.8
5,346,548 + PFLU_RS23850 0.60 +0.4
5,346,548 + PFLU_RS23850 0.60 -0.1
5,346,548 + PFLU_RS23850 0.60 -0.4
5,346,548 + PFLU_RS23850 0.60 -0.9
5,346,549 - PFLU_RS23850 0.60 -0.0
5,346,549 - PFLU_RS23850 0.60 +0.0
5,346,549 - PFLU_RS23850 0.60 +1.6
5,346,549 - PFLU_RS23850 0.60 +0.2
5,346,549 - PFLU_RS23850 0.60 -0.2
5,346,549 - PFLU_RS23850 0.60 +0.8
5,346,549 - PFLU_RS23850 0.60 +1.6
5,346,549 - PFLU_RS23850 0.60 -1.0
5,346,621 + PFLU_RS23850 0.66 -0.3
5,346,621 + PFLU_RS23850 0.66 -1.6
5,346,622 - PFLU_RS23850 0.66 +0.9
5,346,848 + PFLU_RS23850 0.85 +0.7
5,346,849 - PFLU_RS23850 0.85 +0.5
5,346,860 - PFLU_RS23850 0.86 +0.2
5,346,966 + -2.3
5,346,967 - +0.1
5,346,980 + -0.0
5,346,980 + -0.5
5,346,980 + -0.3
5,346,980 + -0.4
5,346,980 + +1.2
5,346,980 + -1.7
5,346,981 - +1.6
5,346,987 - -2.0
5,347,025 + +0.6
5,347,026 - +0.8
5,347,283 + PFLU_RS23855 0.63 -0.1
5,347,283 + PFLU_RS23855 0.63 +0.1
5,347,283 + PFLU_RS23855 0.63 -1.3
5,347,283 + PFLU_RS23855 0.63 +0.1
5,347,283 + PFLU_RS23855 0.63 -0.7
5,347,284 - PFLU_RS23855 0.63 +0.5
5,347,284 - PFLU_RS23855 0.63 -0.6
5,347,312 - PFLU_RS23855 0.70 +0.7
5,347,312 - PFLU_RS23855 0.70 +1.1
5,347,470 + +0.1
5,347,471 - -0.3
5,347,491 + +1.2
5,347,491 + -0.6
5,347,491 + -1.4
5,347,491 + -2.3
5,347,491 + +0.3
5,347,491 + +0.0
5,347,491 + -1.0
5,347,491 + -1.3
5,347,492 - +0.6
5,347,492 - -0.8
5,347,492 - +0.4
5,347,492 - +0.8
5,347,492 - -1.9
5,347,492 - -0.8
5,347,492 - +0.0
5,347,492 - +0.0
5,347,492 - +1.7
5,347,733 - PFLU_RS23860 0.17 +1.6
5,347,733 - PFLU_RS23860 0.17 -1.4
5,347,848 + PFLU_RS23860 0.27 -0.4
5,347,848 + PFLU_RS23860 0.27 -0.2
5,347,848 + PFLU_RS23860 0.27 -0.1
5,347,848 + PFLU_RS23860 0.27 -0.5
5,347,848 + PFLU_RS23860 0.27 +0.0
5,347,848 + PFLU_RS23860 0.27 +1.7
5,347,848 + PFLU_RS23860 0.27 +1.0
5,347,848 + PFLU_RS23860 0.27 +1.0
5,347,848 + PFLU_RS23860 0.27 -1.0
5,347,848 + PFLU_RS23860 0.27 -1.3
5,347,848 + PFLU_RS23860 0.27 -1.7
5,347,848 + PFLU_RS23860 0.27 -1.2
5,347,849 - PFLU_RS23860 0.27 -1.1
5,347,849 - PFLU_RS23860 0.27 +0.3
5,347,849 - PFLU_RS23860 0.27 -1.1
5,347,849 - PFLU_RS23860 0.27 +0.1
5,347,849 - PFLU_RS23860 0.27 -0.2
5,347,849 - PFLU_RS23860 0.27 +0.4
5,347,849 - PFLU_RS23860 0.27 +0.8
5,347,849 - PFLU_RS23860 0.27 -2.4
5,347,849 - PFLU_RS23860 0.27 -0.1
5,347,849 - PFLU_RS23860 0.27 -1.2
5,347,861 + PFLU_RS23860 0.28 +0.8
5,347,862 - PFLU_RS23860 0.28 -0.0
5,347,901 + PFLU_RS23860 0.32 +0.3
5,348,044 + PFLU_RS23860 0.44 -0.7
5,348,044 + PFLU_RS23860 0.44 -1.1
5,348,044 + PFLU_RS23860 0.44 +1.0
5,348,045 - PFLU_RS23860 0.44 +0.8
5,348,045 - PFLU_RS23860 0.44 -2.4
5,348,045 - PFLU_RS23860 0.44 -0.9
5,348,045 - PFLU_RS23860 0.44 -1.3
5,348,106 - PFLU_RS23860 0.49 +2.0
5,348,172 + PFLU_RS23860 0.55 +0.9
5,348,172 + PFLU_RS23860 0.55 +1.1
5,348,173 - PFLU_RS23860 0.55 +2.3
5,348,173 - PFLU_RS23860 0.55 +0.2
5,348,173 - PFLU_RS23860 0.55 -0.2
5,348,195 + PFLU_RS23860 0.57 -0.8
5,348,195 + PFLU_RS23860 0.57 +0.0
5,348,196 - PFLU_RS23860 0.57 +0.6
5,348,196 - PFLU_RS23860 0.57 +0.0
5,348,203 + PFLU_RS23860 0.58 -0.7
5,348,204 - PFLU_RS23860 0.58 +1.4
5,348,204 - PFLU_RS23860 0.58 +0.4
5,348,204 - PFLU_RS23860 0.58 +0.7
5,348,204 - PFLU_RS23860 0.58 -0.2
5,348,204 - PFLU_RS23860 0.58 -1.1
5,348,204 - PFLU_RS23860 0.58 +2.2
5,348,204 - PFLU_RS23860 0.58 -0.0
5,348,232 + PFLU_RS23860 0.60 -0.5
5,348,232 + PFLU_RS23860 0.60 -0.3
5,348,233 - PFLU_RS23860 0.60 +0.0
5,348,233 - PFLU_RS23860 0.60 -1.1
5,348,233 - PFLU_RS23860 0.60 +0.4
5,348,342 + PFLU_RS23860 0.70 +0.1
5,348,342 + PFLU_RS23860 0.70 -0.7
5,348,342 + PFLU_RS23860 0.70 +0.7
5,348,342 + PFLU_RS23860 0.70 +0.2
5,348,342 + PFLU_RS23860 0.70 -0.4
5,348,342 + PFLU_RS23860 0.70 +1.4
5,348,342 + PFLU_RS23860 0.70 -0.8
5,348,342 + PFLU_RS23860 0.70 -0.7
5,348,342 + PFLU_RS23860 0.70 -1.3
5,348,342 + PFLU_RS23860 0.70 +2.3
5,348,342 + PFLU_RS23860 0.70 -2.2
5,348,342 + PFLU_RS23860 0.70 -0.6
5,348,342 + PFLU_RS23860 0.70 -0.6
5,348,342 + PFLU_RS23860 0.70 +0.8
5,348,342 + PFLU_RS23860 0.70 +1.6
5,348,343 - PFLU_RS23860 0.70 -0.2
5,348,343 - PFLU_RS23860 0.70 +0.1
5,348,343 - PFLU_RS23860 0.70 +0.5
5,348,343 - PFLU_RS23860 0.70 +1.0
5,348,343 - PFLU_RS23860 0.70 +0.1
5,348,343 - PFLU_RS23860 0.70 +0.7
5,348,343 - PFLU_RS23860 0.70 -2.5
5,348,343 - PFLU_RS23860 0.70 -0.9
5,348,343 - PFLU_RS23860 0.70 +0.0
5,348,343 - PFLU_RS23860 0.70 +0.3
5,348,343 - PFLU_RS23860 0.70 -1.8
5,348,343 - PFLU_RS23860 0.70 -1.9

Or see this region's nucleotide sequence