Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS22730 and PFLU_RS22735 are separated by 253 nucleotides PFLU_RS22735 and PFLU_RS22740 are separated by 151 nucleotides
PFLU_RS22730: PFLU_RS22730 - IS110 family transposase, at 5,118,121 to 5,119,053
_RS22730
PFLU_RS22735: PFLU_RS22735 - bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH, at 5,119,307 to 5,119,924
_RS22735
PFLU_RS22740: PFLU_RS22740 - phosphoadenylyl-sulfate reductase, at 5,120,076 to 5,120,810
_RS22740
Position (kb) 5119
5120 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5119.308 kb on + strand at 5119.308 kb on + strand at 5119.308 kb on + strand at 5119.308 kb on + strand at 5119.308 kb on + strand at 5119.308 kb on + strand at 5119.308 kb on + strand at 5119.308 kb on + strand at 5119.308 kb on + strand at 5119.308 kb on + strand at 5119.308 kb on + strand at 5119.308 kb on + strand at 5119.308 kb on + strand at 5119.308 kb on + strand at 5119.308 kb on + strand at 5119.309 kb on - strand at 5119.309 kb on - strand at 5119.309 kb on - strand at 5119.309 kb on - strand at 5119.309 kb on - strand at 5119.309 kb on - strand at 5119.309 kb on - strand at 5119.309 kb on - strand at 5119.309 kb on - strand at 5119.339 kb on + strand at 5119.340 kb on - strand at 5119.366 kb on + strand at 5119.366 kb on + strand at 5119.366 kb on + strand at 5119.366 kb on + strand at 5119.366 kb on + strand at 5119.366 kb on + strand at 5119.366 kb on + strand at 5119.366 kb on + strand at 5119.366 kb on + strand at 5119.366 kb on + strand at 5119.366 kb on + strand at 5119.367 kb on - strand at 5119.367 kb on - strand at 5119.367 kb on - strand at 5119.367 kb on - strand at 5119.367 kb on - strand at 5119.367 kb on - strand at 5119.367 kb on - strand at 5119.464 kb on + strand, within PFLU_RS22735 at 5119.464 kb on + strand, within PFLU_RS22735 at 5119.465 kb on - strand, within PFLU_RS22735 at 5119.465 kb on - strand, within PFLU_RS22735 at 5119.465 kb on - strand, within PFLU_RS22735 at 5119.465 kb on - strand, within PFLU_RS22735 at 5119.494 kb on + strand, within PFLU_RS22735 at 5119.494 kb on + strand, within PFLU_RS22735 at 5119.494 kb on + strand, within PFLU_RS22735 at 5119.494 kb on + strand, within PFLU_RS22735 at 5119.494 kb on + strand, within PFLU_RS22735 at 5119.494 kb on + strand, within PFLU_RS22735 at 5119.494 kb on + strand, within PFLU_RS22735 at 5119.494 kb on + strand, within PFLU_RS22735 at 5119.494 kb on + strand, within PFLU_RS22735 at 5119.494 kb on + strand, within PFLU_RS22735 at 5119.495 kb on - strand, within PFLU_RS22735 at 5119.495 kb on - strand, within PFLU_RS22735 at 5119.495 kb on - strand, within PFLU_RS22735 at 5119.495 kb on - strand, within PFLU_RS22735 at 5119.515 kb on - strand, within PFLU_RS22735 at 5119.552 kb on - strand, within PFLU_RS22735 at 5119.552 kb on - strand, within PFLU_RS22735 at 5119.552 kb on - strand, within PFLU_RS22735 at 5119.552 kb on - strand, within PFLU_RS22735 at 5119.644 kb on + strand, within PFLU_RS22735 at 5119.644 kb on + strand, within PFLU_RS22735 at 5119.802 kb on + strand, within PFLU_RS22735 at 5119.802 kb on + strand, within PFLU_RS22735 at 5119.802 kb on + strand, within PFLU_RS22735 at 5119.802 kb on + strand, within PFLU_RS22735 at 5119.802 kb on + strand, within PFLU_RS22735 at 5119.802 kb on + strand, within PFLU_RS22735 at 5119.802 kb on + strand, within PFLU_RS22735 at 5119.802 kb on + strand, within PFLU_RS22735 at 5119.802 kb on + strand, within PFLU_RS22735 at 5119.802 kb on + strand, within PFLU_RS22735 at 5119.803 kb on - strand, within PFLU_RS22735 at 5119.803 kb on - strand, within PFLU_RS22735 at 5119.803 kb on - strand, within PFLU_RS22735 at 5119.803 kb on - strand, within PFLU_RS22735 at 5119.803 kb on - strand, within PFLU_RS22735 at 5119.803 kb on - strand, within PFLU_RS22735 at 5119.803 kb on - strand, within PFLU_RS22735 at 5119.803 kb on - strand, within PFLU_RS22735 at 5119.803 kb on - strand, within PFLU_RS22735 at 5119.803 kb on - strand, within PFLU_RS22735 at 5119.809 kb on + strand, within PFLU_RS22735 at 5119.829 kb on - strand, within PFLU_RS22735 at 5120.013 kb on + strand at 5120.013 kb on + strand at 5120.013 kb on + strand at 5120.014 kb on - strand at 5120.014 kb on - strand at 5120.021 kb on + strand at 5120.035 kb on + strand at 5120.035 kb on + strand at 5120.036 kb on - strand at 5120.037 kb on + strand at 5120.037 kb on + strand at 5120.037 kb on + strand at 5120.037 kb on + strand at 5120.038 kb on - strand at 5120.038 kb on - strand at 5120.062 kb on + strand at 5120.062 kb on + strand at 5120.062 kb on + strand at 5120.063 kb on - strand at 5120.063 kb on - strand at 5120.063 kb on - strand at 5120.115 kb on + strand at 5120.115 kb on + strand at 5120.115 kb on + strand at 5120.115 kb on + strand at 5120.319 kb on + strand, within PFLU_RS22740 at 5120.320 kb on - strand, within PFLU_RS22740 at 5120.320 kb on - strand, within PFLU_RS22740 at 5120.320 kb on - strand, within PFLU_RS22740 at 5120.320 kb on - strand, within PFLU_RS22740 at 5120.400 kb on + strand, within PFLU_RS22740 at 5120.400 kb on + strand, within PFLU_RS22740 at 5120.401 kb on - strand, within PFLU_RS22740 at 5120.570 kb on + strand, within PFLU_RS22740 at 5120.570 kb on + strand, within PFLU_RS22740 at 5120.571 kb on - strand, within PFLU_RS22740 at 5120.625 kb on + strand, within PFLU_RS22740 at 5120.626 kb on - strand, within PFLU_RS22740 at 5120.626 kb on - strand, within PFLU_RS22740 at 5120.626 kb on - strand, within PFLU_RS22740 at 5120.626 kb on - strand, within PFLU_RS22740 at 5120.649 kb on + strand, within PFLU_RS22740 at 5120.650 kb on - strand, within PFLU_RS22740 at 5120.675 kb on + strand, within PFLU_RS22740 at 5120.792 kb on + strand at 5120.792 kb on + strand at 5120.793 kb on - strand at 5120.808 kb on + strand at 5120.808 kb on + strand at 5120.809 kb on - strand at 5120.916 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 5,119,308 + -2.3 5,119,308 + -2.1 5,119,308 + -0.1 5,119,308 + +0.6 5,119,308 + +0.3 5,119,308 + -0.4 5,119,308 + +0.4 5,119,308 + +0.8 5,119,308 + -1.1 5,119,308 + +0.8 5,119,308 + +0.5 5,119,308 + -0.1 5,119,308 + -0.7 5,119,308 + -2.0 5,119,308 + +1.3 5,119,309 - +0.2 5,119,309 - -0.7 5,119,309 - -1.5 5,119,309 - +0.1 5,119,309 - +0.8 5,119,309 - -1.4 5,119,309 - -0.8 5,119,309 - +1.2 5,119,309 - +0.5 5,119,339 + +1.1 5,119,340 - -0.5 5,119,366 + -0.1 5,119,366 + -1.4 5,119,366 + -0.4 5,119,366 + +2.2 5,119,366 + +0.5 5,119,366 + -1.4 5,119,366 + -0.8 5,119,366 + -1.9 5,119,366 + +0.3 5,119,366 + -0.5 5,119,366 + -1.2 5,119,367 - -0.9 5,119,367 - +0.3 5,119,367 - -2.7 5,119,367 - -1.6 5,119,367 - -1.6 5,119,367 - -0.7 5,119,367 - +0.4 5,119,464 + PFLU_RS22735 0.25 -0.1 5,119,464 + PFLU_RS22735 0.25 -0.1 5,119,465 - PFLU_RS22735 0.26 -3.7 5,119,465 - PFLU_RS22735 0.26 -2.2 5,119,465 - PFLU_RS22735 0.26 +0.6 5,119,465 - PFLU_RS22735 0.26 +1.1 5,119,494 + PFLU_RS22735 0.30 -1.3 5,119,494 + PFLU_RS22735 0.30 -1.2 5,119,494 + PFLU_RS22735 0.30 -1.3 5,119,494 + PFLU_RS22735 0.30 +0.1 5,119,494 + PFLU_RS22735 0.30 +0.4 5,119,494 + PFLU_RS22735 0.30 +0.5 5,119,494 + PFLU_RS22735 0.30 -0.2 5,119,494 + PFLU_RS22735 0.30 -0.8 5,119,494 + PFLU_RS22735 0.30 -1.9 5,119,494 + PFLU_RS22735 0.30 -1.0 5,119,495 - PFLU_RS22735 0.30 -0.5 5,119,495 - PFLU_RS22735 0.30 -1.0 5,119,495 - PFLU_RS22735 0.30 -1.2 5,119,495 - PFLU_RS22735 0.30 -0.5 5,119,515 - PFLU_RS22735 0.34 -1.0 5,119,552 - PFLU_RS22735 0.40 -1.3 5,119,552 - PFLU_RS22735 0.40 +0.3 5,119,552 - PFLU_RS22735 0.40 -0.5 5,119,552 - PFLU_RS22735 0.40 -0.3 5,119,644 + PFLU_RS22735 0.55 -1.5 5,119,644 + PFLU_RS22735 0.55 -0.8 5,119,802 + PFLU_RS22735 0.80 +0.2 5,119,802 + PFLU_RS22735 0.80 -1.8 5,119,802 + PFLU_RS22735 0.80 -2.3 5,119,802 + PFLU_RS22735 0.80 -0.7 5,119,802 + PFLU_RS22735 0.80 -2.0 5,119,802 + PFLU_RS22735 0.80 -0.4 5,119,802 + PFLU_RS22735 0.80 -1.3 5,119,802 + PFLU_RS22735 0.80 +0.1 5,119,802 + PFLU_RS22735 0.80 -1.7 5,119,802 + PFLU_RS22735 0.80 -2.4 5,119,803 - PFLU_RS22735 0.80 +1.3 5,119,803 - PFLU_RS22735 0.80 -0.7 5,119,803 - PFLU_RS22735 0.80 +0.1 5,119,803 - PFLU_RS22735 0.80 -0.7 5,119,803 - PFLU_RS22735 0.80 +1.4 5,119,803 - PFLU_RS22735 0.80 -1.2 5,119,803 - PFLU_RS22735 0.80 +0.1 5,119,803 - PFLU_RS22735 0.80 -0.3 5,119,803 - PFLU_RS22735 0.80 -0.2 5,119,803 - PFLU_RS22735 0.80 -0.3 5,119,809 + PFLU_RS22735 0.81 +0.1 5,119,829 - PFLU_RS22735 0.84 -3.6 5,120,013 + +0.8 5,120,013 + +1.3 5,120,013 + +1.9 5,120,014 - -1.6 5,120,014 - +2.0 5,120,021 + +0.4 5,120,035 + +0.5 5,120,035 + +0.7 5,120,036 - -0.7 5,120,037 + +2.5 5,120,037 + +1.3 5,120,037 + +0.7 5,120,037 + -2.3 5,120,038 - -2.2 5,120,038 - +0.3 5,120,062 + -0.3 5,120,062 + -0.1 5,120,062 + -0.6 5,120,063 - -1.5 5,120,063 - -2.2 5,120,063 - -0.7 5,120,115 + -2.5 5,120,115 + -0.9 5,120,115 + -2.2 5,120,115 + -2.4 5,120,319 + PFLU_RS22740 0.33 -2.1 5,120,320 - PFLU_RS22740 0.33 -3.1 5,120,320 - PFLU_RS22740 0.33 -1.4 5,120,320 - PFLU_RS22740 0.33 -0.9 5,120,320 - PFLU_RS22740 0.33 -1.4 5,120,400 + PFLU_RS22740 0.44 -2.4 5,120,400 + PFLU_RS22740 0.44 -0.1 5,120,401 - PFLU_RS22740 0.44 -1.5 5,120,570 + PFLU_RS22740 0.67 -1.2 5,120,570 + PFLU_RS22740 0.67 -2.6 5,120,571 - PFLU_RS22740 0.67 -0.7 5,120,625 + PFLU_RS22740 0.75 -1.5 5,120,626 - PFLU_RS22740 0.75 -2.1 5,120,626 - PFLU_RS22740 0.75 -0.7 5,120,626 - PFLU_RS22740 0.75 -2.6 5,120,626 - PFLU_RS22740 0.75 -0.4 5,120,649 + PFLU_RS22740 0.78 -2.0 5,120,650 - PFLU_RS22740 0.78 -2.8 5,120,675 + PFLU_RS22740 0.81 -1.2 5,120,792 + +0.5 5,120,792 + -0.4 5,120,793 - -0.2 5,120,808 + -0.5 5,120,808 + -0.3 5,120,809 - +0.1 5,120,916 - +1.0
Or see this region's nucleotide sequence