Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS18605 and PFLU_RS18610 are separated by 489 nucleotides PFLU_RS18610 and PFLU_RS18615 are separated by 569 nucleotides PFLU_RS18615 and PFLU_RS18620 are separated by 10 nucleotides
PFLU_RS18605: PFLU_RS18605 - secretin, at 4,210,632 to 4,211,369
_RS18605
PFLU_RS18610: PFLU_RS18610 - isocitrate lyase, at 4,211,859 to 4,213,184
_RS18610
PFLU_RS18615: PFLU_RS18615 - NADH-quinone oxidoreductase subunit A, at 4,213,754 to 4,214,167
_RS18615
PFLU_RS18620: PFLU_RS18620 - NADH-quinone oxidoreductase subunit B, at 4,214,178 to 4,214,852
_RS18620
Position (kb) 4211
4212
4213
4214 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4210.948 kb on - strand, within PFLU_RS18605 at 4211.061 kb on + strand, within PFLU_RS18605 at 4211.061 kb on + strand, within PFLU_RS18605 at 4211.062 kb on - strand, within PFLU_RS18605 at 4211.112 kb on + strand, within PFLU_RS18605 at 4211.112 kb on + strand, within PFLU_RS18605 at 4211.112 kb on + strand, within PFLU_RS18605 at 4211.112 kb on + strand, within PFLU_RS18605 at 4211.112 kb on + strand, within PFLU_RS18605 at 4211.112 kb on + strand, within PFLU_RS18605 at 4211.113 kb on - strand, within PFLU_RS18605 at 4211.149 kb on + strand, within PFLU_RS18605 at 4211.149 kb on + strand, within PFLU_RS18605 at 4211.149 kb on + strand, within PFLU_RS18605 at 4211.150 kb on - strand, within PFLU_RS18605 at 4211.197 kb on + strand, within PFLU_RS18605 at 4211.198 kb on - strand, within PFLU_RS18605 at 4211.198 kb on - strand, within PFLU_RS18605 at 4211.198 kb on - strand, within PFLU_RS18605 at 4211.198 kb on - strand, within PFLU_RS18605 at 4211.310 kb on + strand at 4211.310 kb on + strand at 4211.310 kb on + strand at 4211.310 kb on + strand at 4211.310 kb on + strand at 4211.310 kb on + strand at 4211.310 kb on + strand at 4211.310 kb on + strand at 4211.311 kb on - strand at 4211.311 kb on - strand at 4211.311 kb on - strand at 4211.311 kb on - strand at 4211.315 kb on + strand at 4211.342 kb on - strand at 4211.348 kb on + strand at 4211.400 kb on - strand at 4211.413 kb on - strand at 4211.556 kb on - strand at 4211.620 kb on + strand at 4211.621 kb on - strand at 4211.621 kb on - strand at 4211.638 kb on - strand at 4211.638 kb on - strand at 4211.654 kb on + strand at 4211.654 kb on + strand at 4211.654 kb on + strand at 4211.654 kb on + strand at 4211.654 kb on + strand at 4211.654 kb on + strand at 4211.655 kb on - strand at 4211.655 kb on - strand at 4211.697 kb on + strand at 4211.697 kb on + strand at 4211.767 kb on + strand at 4211.767 kb on + strand at 4211.767 kb on + strand at 4211.767 kb on + strand at 4211.767 kb on + strand at 4211.767 kb on + strand at 4211.767 kb on + strand at 4211.768 kb on - strand at 4211.768 kb on - strand at 4211.768 kb on - strand at 4211.768 kb on - strand at 4211.768 kb on - strand at 4211.826 kb on + strand at 4211.826 kb on + strand at 4211.827 kb on - strand at 4211.944 kb on - strand at 4212.147 kb on + strand, within PFLU_RS18610 at 4212.147 kb on + strand, within PFLU_RS18610 at 4212.147 kb on + strand, within PFLU_RS18610 at 4212.147 kb on + strand, within PFLU_RS18610 at 4212.147 kb on + strand, within PFLU_RS18610 at 4212.148 kb on - strand, within PFLU_RS18610 at 4212.148 kb on - strand, within PFLU_RS18610 at 4212.148 kb on - strand, within PFLU_RS18610 at 4212.148 kb on - strand, within PFLU_RS18610 at 4212.148 kb on - strand, within PFLU_RS18610 at 4212.148 kb on - strand, within PFLU_RS18610 at 4212.148 kb on - strand, within PFLU_RS18610 at 4212.148 kb on - strand, within PFLU_RS18610 at 4212.148 kb on - strand, within PFLU_RS18610 at 4212.148 kb on - strand, within PFLU_RS18610 at 4212.198 kb on + strand, within PFLU_RS18610 at 4212.198 kb on + strand, within PFLU_RS18610 at 4212.198 kb on + strand, within PFLU_RS18610 at 4212.198 kb on + strand, within PFLU_RS18610 at 4212.198 kb on + strand, within PFLU_RS18610 at 4212.198 kb on + strand, within PFLU_RS18610 at 4212.199 kb on - strand, within PFLU_RS18610 at 4212.199 kb on - strand, within PFLU_RS18610 at 4212.199 kb on - strand, within PFLU_RS18610 at 4212.199 kb on - strand, within PFLU_RS18610 at 4212.199 kb on - strand, within PFLU_RS18610 at 4212.216 kb on + strand, within PFLU_RS18610 at 4212.217 kb on - strand, within PFLU_RS18610 at 4212.321 kb on + strand, within PFLU_RS18610 at 4212.321 kb on + strand, within PFLU_RS18610 at 4212.321 kb on + strand, within PFLU_RS18610 at 4212.321 kb on + strand, within PFLU_RS18610 at 4212.321 kb on + strand, within PFLU_RS18610 at 4212.321 kb on + strand, within PFLU_RS18610 at 4212.321 kb on + strand, within PFLU_RS18610 at 4212.322 kb on - strand, within PFLU_RS18610 at 4212.322 kb on - strand, within PFLU_RS18610 at 4212.322 kb on - strand, within PFLU_RS18610 at 4212.322 kb on - strand, within PFLU_RS18610 at 4212.322 kb on - strand, within PFLU_RS18610 at 4212.376 kb on + strand, within PFLU_RS18610 at 4212.376 kb on + strand, within PFLU_RS18610 at 4212.376 kb on + strand, within PFLU_RS18610 at 4212.387 kb on + strand, within PFLU_RS18610 at 4212.387 kb on + strand, within PFLU_RS18610 at 4212.487 kb on + strand, within PFLU_RS18610 at 4212.487 kb on + strand, within PFLU_RS18610 at 4212.487 kb on + strand, within PFLU_RS18610 at 4212.487 kb on + strand, within PFLU_RS18610 at 4212.487 kb on + strand, within PFLU_RS18610 at 4212.487 kb on + strand, within PFLU_RS18610 at 4212.511 kb on + strand, within PFLU_RS18610 at 4212.511 kb on + strand, within PFLU_RS18610 at 4212.512 kb on - strand, within PFLU_RS18610 at 4212.512 kb on - strand, within PFLU_RS18610 at 4212.512 kb on - strand, within PFLU_RS18610 at 4212.669 kb on + strand, within PFLU_RS18610 at 4212.669 kb on + strand, within PFLU_RS18610 at 4212.669 kb on + strand, within PFLU_RS18610 at 4212.669 kb on + strand, within PFLU_RS18610 at 4212.669 kb on + strand, within PFLU_RS18610 at 4212.670 kb on - strand, within PFLU_RS18610 at 4212.670 kb on - strand, within PFLU_RS18610 at 4212.670 kb on - strand, within PFLU_RS18610 at 4212.670 kb on - strand, within PFLU_RS18610 at 4212.670 kb on - strand, within PFLU_RS18610 at 4212.670 kb on - strand, within PFLU_RS18610 at 4212.670 kb on - strand, within PFLU_RS18610 at 4212.670 kb on - strand, within PFLU_RS18610 at 4212.670 kb on - strand, within PFLU_RS18610 at 4212.671 kb on + strand, within PFLU_RS18610 at 4212.672 kb on - strand, within PFLU_RS18610 at 4212.672 kb on - strand, within PFLU_RS18610 at 4212.672 kb on - strand, within PFLU_RS18610 at 4212.672 kb on - strand, within PFLU_RS18610 at 4212.717 kb on + strand, within PFLU_RS18610 at 4212.718 kb on - strand, within PFLU_RS18610 at 4212.718 kb on - strand, within PFLU_RS18610 at 4212.829 kb on - strand, within PFLU_RS18610 at 4212.829 kb on - strand, within PFLU_RS18610 at 4212.915 kb on + strand, within PFLU_RS18610 at 4212.915 kb on + strand, within PFLU_RS18610 at 4212.916 kb on - strand, within PFLU_RS18610 at 4212.916 kb on - strand, within PFLU_RS18610 at 4212.987 kb on + strand, within PFLU_RS18610 at 4213.011 kb on + strand, within PFLU_RS18610 at 4213.011 kb on + strand, within PFLU_RS18610 at 4213.011 kb on + strand, within PFLU_RS18610 at 4213.012 kb on - strand, within PFLU_RS18610 at 4213.012 kb on - strand, within PFLU_RS18610 at 4213.012 kb on - strand, within PFLU_RS18610 at 4213.012 kb on - strand, within PFLU_RS18610 at 4213.012 kb on - strand, within PFLU_RS18610 at 4213.056 kb on + strand at 4213.056 kb on + strand at 4213.057 kb on - strand at 4213.096 kb on - strand at 4213.194 kb on - strand at 4213.224 kb on - strand at 4213.224 kb on - strand at 4213.410 kb on + strand at 4213.411 kb on - strand at 4213.430 kb on - strand at 4213.597 kb on + strand at 4213.597 kb on + strand at 4213.598 kb on - strand at 4213.598 kb on - strand at 4213.598 kb on - strand at 4213.598 kb on - strand at 4213.598 kb on - strand at 4213.598 kb on - strand at 4213.598 kb on - strand at 4213.617 kb on + strand at 4213.628 kb on + strand at 4213.637 kb on + strand at 4213.653 kb on - strand at 4213.658 kb on + strand at 4213.689 kb on + strand at 4213.741 kb on - strand at 4213.953 kb on - strand, within PFLU_RS18615 at 4213.953 kb on - strand, within PFLU_RS18615 at 4214.093 kb on + strand, within PFLU_RS18615 at 4214.093 kb on + strand, within PFLU_RS18615 at 4214.093 kb on + strand, within PFLU_RS18615 at 4214.094 kb on - strand, within PFLU_RS18615 at 4214.094 kb on - strand, within PFLU_RS18615 at 4214.098 kb on - strand, within PFLU_RS18615 at 4214.141 kb on - strand at 4214.184 kb on + strand at 4214.184 kb on + strand at 4214.184 kb on + strand at 4214.184 kb on + strand at 4214.184 kb on + strand at 4214.184 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 4,210,948 - PFLU_RS18605 0.43 -0.1 4,211,061 + PFLU_RS18605 0.58 -1.6 4,211,061 + PFLU_RS18605 0.58 -0.3 4,211,062 - PFLU_RS18605 0.58 +2.8 4,211,112 + PFLU_RS18605 0.65 +0.8 4,211,112 + PFLU_RS18605 0.65 +1.0 4,211,112 + PFLU_RS18605 0.65 -0.0 4,211,112 + PFLU_RS18605 0.65 +0.2 4,211,112 + PFLU_RS18605 0.65 -1.6 4,211,112 + PFLU_RS18605 0.65 -1.3 4,211,113 - PFLU_RS18605 0.65 -3.7 4,211,149 + PFLU_RS18605 0.70 +0.2 4,211,149 + PFLU_RS18605 0.70 +0.1 4,211,149 + PFLU_RS18605 0.70 -0.6 4,211,150 - PFLU_RS18605 0.70 -0.4 4,211,197 + PFLU_RS18605 0.77 +1.2 4,211,198 - PFLU_RS18605 0.77 -2.7 4,211,198 - PFLU_RS18605 0.77 -1.3 4,211,198 - PFLU_RS18605 0.77 -0.2 4,211,198 - PFLU_RS18605 0.77 +0.2 4,211,310 + +1.4 4,211,310 + -2.8 4,211,310 + -1.4 4,211,310 + +0.9 4,211,310 + -2.6 4,211,310 + -0.4 4,211,310 + -0.8 4,211,310 + +0.4 4,211,311 - +2.0 4,211,311 - +0.7 4,211,311 - +0.2 4,211,311 - +1.0 4,211,315 + +0.2 4,211,342 - +0.3 4,211,348 + -0.3 4,211,400 - -0.7 4,211,413 - -0.2 4,211,556 - -0.3 4,211,620 + +0.6 4,211,621 - +0.7 4,211,621 - +0.1 4,211,638 - +1.7 4,211,638 - -1.4 4,211,654 + -0.3 4,211,654 + +0.3 4,211,654 + -3.4 4,211,654 + -0.7 4,211,654 + -0.0 4,211,654 + -0.3 4,211,655 - -2.0 4,211,655 - +0.8 4,211,697 + +0.7 4,211,697 + +0.3 4,211,767 + +0.8 4,211,767 + +0.3 4,211,767 + +0.3 4,211,767 + -0.6 4,211,767 + +2.8 4,211,767 + +1.6 4,211,767 + +0.3 4,211,768 - -1.7 4,211,768 - -0.8 4,211,768 - -3.0 4,211,768 - +1.1 4,211,768 - +0.4 4,211,826 + -2.2 4,211,826 + -0.4 4,211,827 - +0.2 4,211,944 - -0.8 4,212,147 + PFLU_RS18610 0.22 +1.0 4,212,147 + PFLU_RS18610 0.22 +0.6 4,212,147 + PFLU_RS18610 0.22 +1.3 4,212,147 + PFLU_RS18610 0.22 -2.4 4,212,147 + PFLU_RS18610 0.22 -1.1 4,212,148 - PFLU_RS18610 0.22 -1.4 4,212,148 - PFLU_RS18610 0.22 -2.4 4,212,148 - PFLU_RS18610 0.22 -2.0 4,212,148 - PFLU_RS18610 0.22 +0.7 4,212,148 - PFLU_RS18610 0.22 -1.5 4,212,148 - PFLU_RS18610 0.22 -0.2 4,212,148 - PFLU_RS18610 0.22 +0.2 4,212,148 - PFLU_RS18610 0.22 -3.0 4,212,148 - PFLU_RS18610 0.22 +0.4 4,212,148 - PFLU_RS18610 0.22 +1.1 4,212,198 + PFLU_RS18610 0.26 -0.3 4,212,198 + PFLU_RS18610 0.26 -1.5 4,212,198 + PFLU_RS18610 0.26 +0.6 4,212,198 + PFLU_RS18610 0.26 +1.0 4,212,198 + PFLU_RS18610 0.26 +0.4 4,212,198 + PFLU_RS18610 0.26 +1.4 4,212,199 - PFLU_RS18610 0.26 +0.4 4,212,199 - PFLU_RS18610 0.26 +0.2 4,212,199 - PFLU_RS18610 0.26 -1.1 4,212,199 - PFLU_RS18610 0.26 -0.9 4,212,199 - PFLU_RS18610 0.26 -0.2 4,212,216 + PFLU_RS18610 0.27 -0.2 4,212,217 - PFLU_RS18610 0.27 -0.9 4,212,321 + PFLU_RS18610 0.35 -0.6 4,212,321 + PFLU_RS18610 0.35 +0.8 4,212,321 + PFLU_RS18610 0.35 +0.7 4,212,321 + PFLU_RS18610 0.35 +0.3 4,212,321 + PFLU_RS18610 0.35 +0.8 4,212,321 + PFLU_RS18610 0.35 +0.2 4,212,321 + PFLU_RS18610 0.35 -1.0 4,212,322 - PFLU_RS18610 0.35 +0.2 4,212,322 - PFLU_RS18610 0.35 -0.8 4,212,322 - PFLU_RS18610 0.35 +1.1 4,212,322 - PFLU_RS18610 0.35 -0.8 4,212,322 - PFLU_RS18610 0.35 +0.4 4,212,376 + PFLU_RS18610 0.39 -1.7 4,212,376 + PFLU_RS18610 0.39 +0.3 4,212,376 + PFLU_RS18610 0.39 -2.9 4,212,387 + PFLU_RS18610 0.40 +0.6 4,212,387 + PFLU_RS18610 0.40 +1.1 4,212,487 + PFLU_RS18610 0.47 -2.1 4,212,487 + PFLU_RS18610 0.47 +0.4 4,212,487 + PFLU_RS18610 0.47 -0.7 4,212,487 + PFLU_RS18610 0.47 -1.4 4,212,487 + PFLU_RS18610 0.47 +0.4 4,212,487 + PFLU_RS18610 0.47 -0.2 4,212,511 + PFLU_RS18610 0.49 -1.8 4,212,511 + PFLU_RS18610 0.49 -0.7 4,212,512 - PFLU_RS18610 0.49 -1.3 4,212,512 - PFLU_RS18610 0.49 +0.1 4,212,512 - PFLU_RS18610 0.49 -2.1 4,212,669 + PFLU_RS18610 0.61 -0.0 4,212,669 + PFLU_RS18610 0.61 -1.1 4,212,669 + PFLU_RS18610 0.61 -0.0 4,212,669 + PFLU_RS18610 0.61 +1.1 4,212,669 + PFLU_RS18610 0.61 +1.6 4,212,670 - PFLU_RS18610 0.61 +0.4 4,212,670 - PFLU_RS18610 0.61 +0.1 4,212,670 - PFLU_RS18610 0.61 +0.3 4,212,670 - PFLU_RS18610 0.61 -1.4 4,212,670 - PFLU_RS18610 0.61 -0.1 4,212,670 - PFLU_RS18610 0.61 +0.4 4,212,670 - PFLU_RS18610 0.61 +0.1 4,212,670 - PFLU_RS18610 0.61 -0.6 4,212,670 - PFLU_RS18610 0.61 -0.8 4,212,671 + PFLU_RS18610 0.61 +0.2 4,212,672 - PFLU_RS18610 0.61 -0.0 4,212,672 - PFLU_RS18610 0.61 -3.0 4,212,672 - PFLU_RS18610 0.61 +0.8 4,212,672 - PFLU_RS18610 0.61 +1.0 4,212,717 + PFLU_RS18610 0.65 -0.9 4,212,718 - PFLU_RS18610 0.65 +0.1 4,212,718 - PFLU_RS18610 0.65 +0.3 4,212,829 - PFLU_RS18610 0.73 -0.2 4,212,829 - PFLU_RS18610 0.73 -0.5 4,212,915 + PFLU_RS18610 0.80 -0.7 4,212,915 + PFLU_RS18610 0.80 -0.6 4,212,916 - PFLU_RS18610 0.80 +0.6 4,212,916 - PFLU_RS18610 0.80 +1.1 4,212,987 + PFLU_RS18610 0.85 +2.6 4,213,011 + PFLU_RS18610 0.87 -0.3 4,213,011 + PFLU_RS18610 0.87 +0.2 4,213,011 + PFLU_RS18610 0.87 -0.2 4,213,012 - PFLU_RS18610 0.87 -0.6 4,213,012 - PFLU_RS18610 0.87 -0.9 4,213,012 - PFLU_RS18610 0.87 +0.3 4,213,012 - PFLU_RS18610 0.87 +0.7 4,213,012 - PFLU_RS18610 0.87 +1.1 4,213,056 + -1.8 4,213,056 + -0.2 4,213,057 - -0.8 4,213,096 - -0.0 4,213,194 - +1.0 4,213,224 - +0.5 4,213,224 - -1.4 4,213,410 + +0.6 4,213,411 - +0.3 4,213,430 - +0.2 4,213,597 + +0.9 4,213,597 + -0.0 4,213,598 - -2.4 4,213,598 - -1.8 4,213,598 - -1.7 4,213,598 - -1.3 4,213,598 - -2.4 4,213,598 - +0.2 4,213,598 - -0.6 4,213,617 + -0.5 4,213,628 + +1.0 4,213,637 + -2.0 4,213,653 - +1.6 4,213,658 + +1.0 4,213,689 + +1.0 4,213,741 - -0.0 4,213,953 - PFLU_RS18615 0.48 -0.8 4,213,953 - PFLU_RS18615 0.48 -1.6 4,214,093 + PFLU_RS18615 0.82 +0.6 4,214,093 + PFLU_RS18615 0.82 +0.6 4,214,093 + PFLU_RS18615 0.82 +0.6 4,214,094 - PFLU_RS18615 0.82 -0.4 4,214,094 - PFLU_RS18615 0.82 -0.4 4,214,098 - PFLU_RS18615 0.83 -1.4 4,214,141 - -0.0 4,214,184 + -1.0 4,214,184 + -0.4 4,214,184 + -0.8 4,214,184 + -0.4 4,214,184 + +0.3 4,214,184 + +0.6
Or see this region's nucleotide sequence