Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS17535

Experiment: L-Arabinose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose (C)
3,982,361	+		PFLU_RS17530	0.68	+2.4
3,982,362	-		PFLU_RS17530	0.68	+0.4
3,982,362	-		PFLU_RS17530	0.68	+0.6
3,982,638	+		PFLU_RS17530	0.78	-0.2
3,982,638	+		PFLU_RS17530	0.78	+1.0
3,982,673	+		PFLU_RS17530	0.80	-1.4
3,982,674	-		PFLU_RS17530	0.80	+1.5
3,982,674	-		PFLU_RS17530	0.80	-0.8
3,982,734	-		PFLU_RS17530	0.82	-0.8
3,982,811	+		PFLU_RS17530	0.85	-0.7
3,982,811	+		PFLU_RS17530	0.85	-1.6
3,982,811	+		PFLU_RS17530	0.85	+0.9
3,982,812	-		PFLU_RS17530	0.85	+2.1
3,982,826	+		PFLU_RS17530	0.85	+0.9
3,982,826	+		PFLU_RS17530	0.85	-2.0
3,982,826	+		PFLU_RS17530	0.85	+0.6
3,982,826	+		PFLU_RS17530	0.85	-1.4
3,982,827	-		PFLU_RS17530	0.85	+1.4
3,982,827	-		PFLU_RS17530	0.85	+1.4
3,982,827	-		PFLU_RS17530	0.85	+0.6
3,982,827	-		PFLU_RS17530	0.85	+1.3
3,982,860	-		PFLU_RS17530	0.87	-2.1
3,983,051	+				+1.4
3,983,051	+				+0.6
3,983,051	+				-0.8
3,983,051	+				+1.7
3,983,051	+				+0.9
3,983,051	+				-1.1
3,983,051	+				-0.8
3,983,051	+				+2.3
3,983,052	-				+0.3
3,983,078	+				-1.9
3,983,078	+				-0.4
3,983,079	-				+0.5
3,983,185	+				-2.2
3,983,185	+				-1.0
3,983,186	-				+0.5
3,983,186	-				-1.2
3,983,247	+				+1.2
3,983,247	+				-1.8
3,983,248	-				-0.8
3,983,248	-				-0.2
3,983,248	-				-0.2
3,983,282	+				-1.7
3,983,282	+				-0.6
3,983,283	-				-0.9
3,983,294	+				+0.8
3,983,295	-				+0.1
3,983,295	-				+0.2
3,983,300	+				+0.1
3,983,300	+				-0.2
3,983,300	+				-0.6
3,983,300	+				-2.1
3,983,300	+				+1.1
3,983,301	-				+1.1
3,983,301	-				-1.8
3,983,301	-				-2.5
3,983,301	-				+1.2
3,983,357	+				+0.0
3,983,358	-				+0.9
3,983,358	-				+0.7
3,983,358	-				-0.5
3,983,358	-				+0.4
3,983,358	-				-0.2
3,983,414	+				-0.0
3,983,415	-				+0.2
3,983,415	-				-0.3
3,983,525	+		PFLU_RS17535	0.17	+0.8
3,983,525	+		PFLU_RS17535	0.17	-0.4
3,983,525	+		PFLU_RS17535	0.17	-0.4
3,983,526	-		PFLU_RS17535	0.17	+1.8
3,983,540	+		PFLU_RS17535	0.18	-1.6
3,983,540	+		PFLU_RS17535	0.18	-1.3
3,983,540	+		PFLU_RS17535	0.18	+0.8
3,983,541	-		PFLU_RS17535	0.18	-0.0
3,983,541	-		PFLU_RS17535	0.18	-0.8
3,983,613	-		PFLU_RS17535	0.24	-3.6
3,983,613	-		PFLU_RS17535	0.24	+0.0
3,983,738	+		PFLU_RS17535	0.32	-0.1
3,983,739	-		PFLU_RS17535	0.32	-1.4
3,983,756	+		PFLU_RS17535	0.34	-0.7
3,983,756	+		PFLU_RS17535	0.34	+0.6
3,983,756	+		PFLU_RS17535	0.34	+1.8
3,983,757	-		PFLU_RS17535	0.34	+1.4
3,983,757	-		PFLU_RS17535	0.34	+0.2
3,983,817	-		PFLU_RS17535	0.38	-1.1
3,983,921	+		PFLU_RS17535	0.45	+0.1
3,983,921	+		PFLU_RS17535	0.45	-1.9
3,983,921	+		PFLU_RS17535	0.45	-0.4
3,983,921	+		PFLU_RS17535	0.45	+0.4
3,983,921	+		PFLU_RS17535	0.45	-1.2
3,983,921	+		PFLU_RS17535	0.45	-1.2
3,983,921	+		PFLU_RS17535	0.45	-3.5
3,983,922	-		PFLU_RS17535	0.45	-0.1
3,983,922	-		PFLU_RS17535	0.45	+0.8
3,983,922	-		PFLU_RS17535	0.45	+0.4
3,983,933	+		PFLU_RS17535	0.46	-0.2
3,983,933	+		PFLU_RS17535	0.46	-2.8
3,983,954	+		PFLU_RS17535	0.48	+0.0
3,983,955	-		PFLU_RS17535	0.48	-0.9
3,983,957	+		PFLU_RS17535	0.48	-1.2
3,983,957	+		PFLU_RS17535	0.48	+0.5
3,983,957	+		PFLU_RS17535	0.48	+0.9
3,983,958	-		PFLU_RS17535	0.48	+0.5
3,983,958	-		PFLU_RS17535	0.48	+0.9
3,983,958	-		PFLU_RS17535	0.48	+0.6
3,983,960	+		PFLU_RS17535	0.48	-1.6
3,983,960	+		PFLU_RS17535	0.48	-0.6
3,983,960	+		PFLU_RS17535	0.48	-0.9
3,983,961	-		PFLU_RS17535	0.48	+0.4
3,983,961	-		PFLU_RS17535	0.48	+0.9
3,983,961	-		PFLU_RS17535	0.48	-0.5
3,983,961	-		PFLU_RS17535	0.48	+0.1
3,984,014	+		PFLU_RS17535	0.52	+0.1
3,984,014	+		PFLU_RS17535	0.52	-0.7
3,984,084	+		PFLU_RS17535	0.57	-1.2
3,984,084	+		PFLU_RS17535	0.57	+0.7
3,984,085	-		PFLU_RS17535	0.57	-0.5
3,984,156	+		PFLU_RS17535	0.62	+0.4
3,984,156	+		PFLU_RS17535	0.62	-0.1
3,984,156	+		PFLU_RS17535	0.62	-2.2
3,984,157	-		PFLU_RS17535	0.62	-0.8
3,984,157	-		PFLU_RS17535	0.62	-1.6
3,984,157	-		PFLU_RS17535	0.62	-1.8
3,984,533	+		PFLU_RS17535	0.89	+0.4
3,984,533	+		PFLU_RS17535	0.89	-1.0
3,984,533	+		PFLU_RS17535	0.89	+0.4
3,984,533	+		PFLU_RS17535	0.89	+1.0
3,984,533	+		PFLU_RS17535	0.89	-0.6
3,984,534	-		PFLU_RS17535	0.89	+1.1
3,984,534	-		PFLU_RS17535	0.89	+2.4
3,984,534	-		PFLU_RS17535	0.89	-1.8
3,984,534	-		PFLU_RS17535	0.89	-1.1
3,984,536	+		PFLU_RS17535	0.89	-1.8
3,984,536	+		PFLU_RS17535	0.89	-0.9
3,984,536	+		PFLU_RS17535	0.89	+0.6
3,984,536	+		PFLU_RS17535	0.89	+0.1
3,984,536	+		PFLU_RS17535	0.89	+1.1
3,984,537	-		PFLU_RS17535	0.89	+1.3
3,984,537	-		PFLU_RS17535	0.89	-0.4
3,984,537	-		PFLU_RS17535	0.89	-0.3
3,984,537	-		PFLU_RS17535	0.89	+0.5
3,984,537	-		PFLU_RS17535	0.89	+2.0
3,984,537	-		PFLU_RS17535	0.89	+0.2
3,984,537	-		PFLU_RS17535	0.89	-1.1
3,984,537	-		PFLU_RS17535	0.89	-0.7
3,984,537	-		PFLU_RS17535	0.89	-0.7
3,984,537	-		PFLU_RS17535	0.89	-1.4
3,984,537	-		PFLU_RS17535	0.89	-0.1
3,984,716	+				-1.0
3,984,734	-				-2.4
3,984,802	+				-1.6
3,984,802	+				-0.5
3,984,802	+				-1.4
3,984,803	-				+0.3
3,984,854	+				+0.4
3,985,049	+				+1.0
3,985,049	+				+0.3
3,985,050	-				-0.0
3,985,050	-				-1.4
3,985,050	-				+0.1
3,985,070	+				+1.0
3,985,070	+				-0.2
3,985,070	+				-2.2
3,985,071	-				-0.3
3,985,271	+		PFLU_RS17540	0.21	-0.4
3,985,271	+		PFLU_RS17540	0.21	-0.1
3,985,272	-		PFLU_RS17540	0.21	-0.7
3,985,275	-		PFLU_RS17540	0.21	+0.2
3,985,366	+		PFLU_RS17540	0.28	-0.9
3,985,366	+		PFLU_RS17540	0.28	+1.5
3,985,366	+		PFLU_RS17540	0.28	+1.3
3,985,366	+		PFLU_RS17540	0.28	+0.9
3,985,367	-		PFLU_RS17540	0.28	+0.4
3,985,367	-		PFLU_RS17540	0.28	-2.1
3,985,367	-		PFLU_RS17540	0.28	-1.1
3,985,626	+		PFLU_RS17540	0.47	+0.1
3,985,626	+		PFLU_RS17540	0.47	-0.7
3,985,626	+		PFLU_RS17540	0.47	-1.5
3,985,627	-		PFLU_RS17540	0.47	-1.0
3,985,627	-		PFLU_RS17540	0.47	-1.2