Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS09245

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS09240 and PFLU_RS09245 are separated by 110 nucleotidesPFLU_RS09245 and PFLU_RS09250 are separated by 106 nucleotides PFLU_RS09240: PFLU_RS09240 - MFS transporter, at 2,045,398 to 2,047,266 _RS09240 PFLU_RS09245: PFLU_RS09245 - quaternary ammonium compound efflux SMR transporter SugE, at 2,047,377 to 2,047,691 _RS09245 PFLU_RS09250: PFLU_RS09250 - bile acid:sodium symporter family protein, at 2,047,798 to 2,048,763 _RS09250 Position (kb) 2047 2048Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2046.391 kb on + strand, within PFLU_RS09240at 2046.392 kb on - strand, within PFLU_RS09240at 2046.392 kb on - strand, within PFLU_RS09240at 2046.392 kb on - strand, within PFLU_RS09240at 2046.451 kb on + strand, within PFLU_RS09240at 2046.451 kb on + strand, within PFLU_RS09240at 2046.451 kb on + strand, within PFLU_RS09240at 2046.451 kb on + strand, within PFLU_RS09240at 2046.451 kb on + strand, within PFLU_RS09240at 2046.451 kb on + strand, within PFLU_RS09240at 2046.451 kb on + strand, within PFLU_RS09240at 2046.452 kb on - strand, within PFLU_RS09240at 2046.452 kb on - strand, within PFLU_RS09240at 2046.452 kb on - strand, within PFLU_RS09240at 2046.452 kb on - strand, within PFLU_RS09240at 2046.452 kb on - strand, within PFLU_RS09240at 2046.453 kb on + strand, within PFLU_RS09240at 2046.466 kb on + strand, within PFLU_RS09240at 2046.466 kb on + strand, within PFLU_RS09240at 2046.652 kb on + strand, within PFLU_RS09240at 2046.652 kb on + strand, within PFLU_RS09240at 2046.652 kb on + strand, within PFLU_RS09240at 2046.652 kb on + strand, within PFLU_RS09240at 2046.652 kb on + strand, within PFLU_RS09240at 2046.652 kb on + strand, within PFLU_RS09240at 2046.652 kb on + strand, within PFLU_RS09240at 2046.652 kb on + strand, within PFLU_RS09240at 2046.652 kb on + strand, within PFLU_RS09240at 2046.652 kb on + strand, within PFLU_RS09240at 2046.652 kb on + strand, within PFLU_RS09240at 2046.652 kb on + strand, within PFLU_RS09240at 2046.652 kb on + strand, within PFLU_RS09240at 2046.652 kb on + strand, within PFLU_RS09240at 2046.652 kb on + strand, within PFLU_RS09240at 2046.652 kb on + strand, within PFLU_RS09240at 2046.652 kb on + strand, within PFLU_RS09240at 2046.652 kb on + strand, within PFLU_RS09240at 2046.652 kb on + strand, within PFLU_RS09240at 2046.652 kb on + strand, within PFLU_RS09240at 2046.653 kb on - strand, within PFLU_RS09240at 2046.653 kb on - strand, within PFLU_RS09240at 2046.653 kb on - strand, within PFLU_RS09240at 2046.653 kb on - strand, within PFLU_RS09240at 2046.653 kb on - strand, within PFLU_RS09240at 2046.653 kb on - strand, within PFLU_RS09240at 2046.653 kb on - strand, within PFLU_RS09240at 2046.653 kb on - strand, within PFLU_RS09240at 2046.653 kb on - strand, within PFLU_RS09240at 2046.653 kb on - strand, within PFLU_RS09240at 2046.653 kb on - strand, within PFLU_RS09240at 2046.653 kb on - strand, within PFLU_RS09240at 2046.718 kb on + strand, within PFLU_RS09240at 2046.718 kb on + strand, within PFLU_RS09240at 2046.719 kb on - strand, within PFLU_RS09240at 2046.719 kb on - strand, within PFLU_RS09240at 2046.851 kb on - strand, within PFLU_RS09240at 2046.851 kb on - strand, within PFLU_RS09240at 2046.851 kb on - strand, within PFLU_RS09240at 2046.851 kb on - strand, within PFLU_RS09240at 2046.851 kb on - strand, within PFLU_RS09240at 2046.853 kb on + strand, within PFLU_RS09240at 2046.853 kb on + strand, within PFLU_RS09240at 2046.853 kb on + strand, within PFLU_RS09240at 2046.853 kb on + strand, within PFLU_RS09240at 2046.853 kb on + strand, within PFLU_RS09240at 2046.854 kb on - strand, within PFLU_RS09240at 2046.854 kb on - strand, within PFLU_RS09240at 2046.854 kb on - strand, within PFLU_RS09240at 2046.854 kb on - strand, within PFLU_RS09240at 2046.854 kb on - strand, within PFLU_RS09240at 2046.854 kb on - strand, within PFLU_RS09240at 2046.854 kb on - strand, within PFLU_RS09240at 2046.854 kb on - strand, within PFLU_RS09240at 2046.862 kb on + strand, within PFLU_RS09240at 2046.862 kb on + strand, within PFLU_RS09240at 2046.862 kb on + strand, within PFLU_RS09240at 2046.862 kb on + strand, within PFLU_RS09240at 2046.862 kb on + strand, within PFLU_RS09240at 2046.863 kb on - strand, within PFLU_RS09240at 2046.863 kb on - strand, within PFLU_RS09240at 2046.879 kb on + strand, within PFLU_RS09240at 2046.879 kb on + strand, within PFLU_RS09240at 2046.879 kb on + strand, within PFLU_RS09240at 2046.879 kb on + strand, within PFLU_RS09240at 2046.880 kb on - strand, within PFLU_RS09240at 2046.880 kb on - strand, within PFLU_RS09240at 2046.880 kb on - strand, within PFLU_RS09240at 2046.944 kb on - strand, within PFLU_RS09240at 2046.944 kb on - strand, within PFLU_RS09240at 2046.963 kb on + strand, within PFLU_RS09240at 2046.973 kb on + strand, within PFLU_RS09240at 2046.974 kb on - strand, within PFLU_RS09240at 2046.974 kb on - strand, within PFLU_RS09240at 2047.264 kb on + strandat 2047.264 kb on + strandat 2047.265 kb on - strandat 2047.265 kb on - strandat 2047.265 kb on - strandat 2047.280 kb on + strandat 2047.281 kb on - strandat 2047.281 kb on - strandat 2047.448 kb on + strand, within PFLU_RS09245at 2047.467 kb on - strand, within PFLU_RS09245at 2047.627 kb on + strand, within PFLU_RS09245at 2047.627 kb on + strand, within PFLU_RS09245at 2047.627 kb on + strand, within PFLU_RS09245at 2047.628 kb on - strand, within PFLU_RS09245at 2047.702 kb on + strandat 2047.702 kb on + strandat 2047.702 kb on + strandat 2047.703 kb on - strandat 2047.703 kb on - strandat 2047.703 kb on - strandat 2047.703 kb on - strandat 2047.705 kb on + strandat 2047.705 kb on + strandat 2047.705 kb on + strandat 2047.705 kb on + strandat 2047.705 kb on + strandat 2047.706 kb on - strandat 2047.706 kb on - strandat 2047.706 kb on - strandat 2047.706 kb on - strandat 2047.706 kb on - strandat 2047.706 kb on - strandat 2047.708 kb on + strandat 2047.708 kb on + strandat 2047.708 kb on + strandat 2047.708 kb on + strandat 2047.708 kb on + strandat 2047.708 kb on + strandat 2047.708 kb on + strandat 2047.708 kb on + strandat 2047.708 kb on + strandat 2047.708 kb on + strandat 2047.709 kb on - strandat 2047.709 kb on - strandat 2047.709 kb on - strandat 2047.709 kb on - strandat 2047.709 kb on - strandat 2047.709 kb on - strandat 2047.709 kb on - strandat 2047.773 kb on - strandat 2047.859 kb on + strandat 2047.859 kb on + strandat 2047.859 kb on + strandat 2047.859 kb on + strandat 2047.859 kb on + strandat 2047.860 kb on - strandat 2047.860 kb on - strandat 2047.860 kb on - strandat 2047.884 kb on + strandat 2047.884 kb on + strandat 2048.043 kb on - strand, within PFLU_RS09250at 2048.043 kb on - strand, within PFLU_RS09250at 2048.043 kb on - strand, within PFLU_RS09250at 2048.135 kb on - strand, within PFLU_RS09250at 2048.189 kb on - strand, within PFLU_RS09250at 2048.231 kb on - strand, within PFLU_RS09250at 2048.231 kb on - strand, within PFLU_RS09250

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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2,046,391 + PFLU_RS09240 0.53 -1.8
2,046,392 - PFLU_RS09240 0.53 +0.8
2,046,392 - PFLU_RS09240 0.53 -1.0
2,046,392 - PFLU_RS09240 0.53 -1.0
2,046,451 + PFLU_RS09240 0.56 -0.6
2,046,451 + PFLU_RS09240 0.56 +0.2
2,046,451 + PFLU_RS09240 0.56 +1.2
2,046,451 + PFLU_RS09240 0.56 +1.4
2,046,451 + PFLU_RS09240 0.56 -1.6
2,046,451 + PFLU_RS09240 0.56 -0.6
2,046,451 + PFLU_RS09240 0.56 +0.6
2,046,452 - PFLU_RS09240 0.56 +0.6
2,046,452 - PFLU_RS09240 0.56 +1.8
2,046,452 - PFLU_RS09240 0.56 +0.9
2,046,452 - PFLU_RS09240 0.56 +0.6
2,046,452 - PFLU_RS09240 0.56 -0.4
2,046,453 + PFLU_RS09240 0.56 +1.0
2,046,466 + PFLU_RS09240 0.57 +0.0
2,046,466 + PFLU_RS09240 0.57 +0.1
2,046,652 + PFLU_RS09240 0.67 +1.1
2,046,652 + PFLU_RS09240 0.67 +0.6
2,046,652 + PFLU_RS09240 0.67 +0.1
2,046,652 + PFLU_RS09240 0.67 -0.6
2,046,652 + PFLU_RS09240 0.67 -1.1
2,046,652 + PFLU_RS09240 0.67 -2.3
2,046,652 + PFLU_RS09240 0.67 +0.7
2,046,652 + PFLU_RS09240 0.67 +1.2
2,046,652 + PFLU_RS09240 0.67 -1.4
2,046,652 + PFLU_RS09240 0.67 -0.1
2,046,652 + PFLU_RS09240 0.67 -0.7
2,046,652 + PFLU_RS09240 0.67 +0.3
2,046,652 + PFLU_RS09240 0.67 +0.5
2,046,652 + PFLU_RS09240 0.67 -0.6
2,046,652 + PFLU_RS09240 0.67 +1.2
2,046,652 + PFLU_RS09240 0.67 +0.7
2,046,652 + PFLU_RS09240 0.67 +0.1
2,046,652 + PFLU_RS09240 0.67 -0.8
2,046,652 + PFLU_RS09240 0.67 -0.0
2,046,652 + PFLU_RS09240 0.67 -0.2
2,046,653 - PFLU_RS09240 0.67 -1.0
2,046,653 - PFLU_RS09240 0.67 +0.2
2,046,653 - PFLU_RS09240 0.67 +1.5
2,046,653 - PFLU_RS09240 0.67 -1.3
2,046,653 - PFLU_RS09240 0.67 +1.2
2,046,653 - PFLU_RS09240 0.67 +0.2
2,046,653 - PFLU_RS09240 0.67 -1.5
2,046,653 - PFLU_RS09240 0.67 +0.6
2,046,653 - PFLU_RS09240 0.67 -0.9
2,046,653 - PFLU_RS09240 0.67 +0.6
2,046,653 - PFLU_RS09240 0.67 +0.9
2,046,653 - PFLU_RS09240 0.67 -0.1
2,046,718 + PFLU_RS09240 0.71 -0.8
2,046,718 + PFLU_RS09240 0.71 +0.4
2,046,719 - PFLU_RS09240 0.71 +0.1
2,046,719 - PFLU_RS09240 0.71 -0.2
2,046,851 - PFLU_RS09240 0.78 +0.4
2,046,851 - PFLU_RS09240 0.78 -1.8
2,046,851 - PFLU_RS09240 0.78 +0.8
2,046,851 - PFLU_RS09240 0.78 -0.0
2,046,851 - PFLU_RS09240 0.78 -2.5
2,046,853 + PFLU_RS09240 0.78 +0.0
2,046,853 + PFLU_RS09240 0.78 +1.2
2,046,853 + PFLU_RS09240 0.78 +1.2
2,046,853 + PFLU_RS09240 0.78 -1.0
2,046,853 + PFLU_RS09240 0.78 +0.2
2,046,854 - PFLU_RS09240 0.78 +0.7
2,046,854 - PFLU_RS09240 0.78 -1.3
2,046,854 - PFLU_RS09240 0.78 +1.0
2,046,854 - PFLU_RS09240 0.78 -1.9
2,046,854 - PFLU_RS09240 0.78 +0.4
2,046,854 - PFLU_RS09240 0.78 +0.1
2,046,854 - PFLU_RS09240 0.78 -1.2
2,046,854 - PFLU_RS09240 0.78 +0.4
2,046,862 + PFLU_RS09240 0.78 -0.5
2,046,862 + PFLU_RS09240 0.78 -0.8
2,046,862 + PFLU_RS09240 0.78 +1.1
2,046,862 + PFLU_RS09240 0.78 -2.8
2,046,862 + PFLU_RS09240 0.78 +1.5
2,046,863 - PFLU_RS09240 0.78 -1.0
2,046,863 - PFLU_RS09240 0.78 +0.8
2,046,879 + PFLU_RS09240 0.79 +0.5
2,046,879 + PFLU_RS09240 0.79 +1.6
2,046,879 + PFLU_RS09240 0.79 -1.3
2,046,879 + PFLU_RS09240 0.79 -2.8
2,046,880 - PFLU_RS09240 0.79 +0.4
2,046,880 - PFLU_RS09240 0.79 +1.6
2,046,880 - PFLU_RS09240 0.79 -0.5
2,046,944 - PFLU_RS09240 0.83 +0.7
2,046,944 - PFLU_RS09240 0.83 -1.1
2,046,963 + PFLU_RS09240 0.84 +0.0
2,046,973 + PFLU_RS09240 0.84 -0.2
2,046,974 - PFLU_RS09240 0.84 +1.2
2,046,974 - PFLU_RS09240 0.84 -1.2
2,047,264 + +0.0
2,047,264 + +0.8
2,047,265 - -0.8
2,047,265 - +0.8
2,047,265 - +1.6
2,047,280 + -0.6
2,047,281 - -1.7
2,047,281 - +1.5
2,047,448 + PFLU_RS09245 0.23 -0.7
2,047,467 - PFLU_RS09245 0.29 -0.7
2,047,627 + PFLU_RS09245 0.79 -0.6
2,047,627 + PFLU_RS09245 0.79 -0.2
2,047,627 + PFLU_RS09245 0.79 -0.0
2,047,628 - PFLU_RS09245 0.80 -2.4
2,047,702 + -2.8
2,047,702 + +1.5
2,047,702 + +1.0
2,047,703 - +0.5
2,047,703 - -0.3
2,047,703 - -1.6
2,047,703 - +3.0
2,047,705 + +0.6
2,047,705 + +0.9
2,047,705 + -0.9
2,047,705 + -0.8
2,047,705 + -0.7
2,047,706 - +0.4
2,047,706 - -0.1
2,047,706 - -1.0
2,047,706 - +0.8
2,047,706 - +1.3
2,047,706 - +0.6
2,047,708 + -2.5
2,047,708 + +1.0
2,047,708 + -1.5
2,047,708 + +0.0
2,047,708 + +0.8
2,047,708 + +1.7
2,047,708 + -1.6
2,047,708 + +2.0
2,047,708 + -1.4
2,047,708 + +2.4
2,047,709 - -1.5
2,047,709 - +1.5
2,047,709 - +2.8
2,047,709 - +0.2
2,047,709 - -1.0
2,047,709 - -0.6
2,047,709 - +0.0
2,047,773 - -0.2
2,047,859 + -0.9
2,047,859 + -2.6
2,047,859 + +1.8
2,047,859 + -0.3
2,047,859 + -0.4
2,047,860 - +0.3
2,047,860 - +0.2
2,047,860 - +0.0
2,047,884 + +0.9
2,047,884 + +0.9
2,048,043 - PFLU_RS09250 0.25 -1.3
2,048,043 - PFLU_RS09250 0.25 -0.1
2,048,043 - PFLU_RS09250 0.25 +1.3
2,048,135 - PFLU_RS09250 0.35 -1.7
2,048,189 - PFLU_RS09250 0.40 +0.1
2,048,231 - PFLU_RS09250 0.45 +0.0
2,048,231 - PFLU_RS09250 0.45 -0.8

Or see this region's nucleotide sequence