Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS08285

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS08275 and PFLU_RS08280 are separated by 41 nucleotidesPFLU_RS08280 and PFLU_RS08285 are separated by 47 nucleotidesPFLU_RS08285 and PFLU_RS08290 overlap by 4 nucleotides PFLU_RS08275: PFLU_RS08275 - hypothetical protein, at 1,849,935 to 1,850,325 _RS08275 PFLU_RS08280: PFLU_RS08280 - hypothetical protein, at 1,850,367 to 1,850,774 _RS08280 PFLU_RS08285: PFLU_RS08285 - hypothetical protein, at 1,850,822 to 1,851,223 _RS08285 PFLU_RS08290: PFLU_RS08290 - type IV secretion protein Rhs, at 1,851,220 to 1,855,938 _RS08290 Position (kb) 1850 1851 1852Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1849.861 kb on + strandat 1849.861 kb on + strandat 1849.862 kb on - strandat 1849.862 kb on - strandat 1849.862 kb on - strandat 1849.909 kb on + strandat 1849.909 kb on + strandat 1849.909 kb on + strandat 1849.909 kb on + strandat 1849.909 kb on + strandat 1849.910 kb on - strandat 1849.910 kb on - strandat 1849.946 kb on + strandat 1849.946 kb on + strandat 1849.947 kb on - strandat 1850.022 kb on - strand, within PFLU_RS08275at 1850.022 kb on - strand, within PFLU_RS08275at 1850.022 kb on - strand, within PFLU_RS08275at 1850.022 kb on - strand, within PFLU_RS08275at 1850.076 kb on + strand, within PFLU_RS08275at 1850.077 kb on - strand, within PFLU_RS08275at 1850.096 kb on + strand, within PFLU_RS08275at 1850.096 kb on + strand, within PFLU_RS08275at 1850.096 kb on + strand, within PFLU_RS08275at 1850.096 kb on + strand, within PFLU_RS08275at 1850.097 kb on - strand, within PFLU_RS08275at 1850.097 kb on - strand, within PFLU_RS08275at 1850.116 kb on + strand, within PFLU_RS08275at 1850.116 kb on + strand, within PFLU_RS08275at 1850.119 kb on + strand, within PFLU_RS08275at 1850.119 kb on + strand, within PFLU_RS08275at 1850.119 kb on + strand, within PFLU_RS08275at 1850.120 kb on - strand, within PFLU_RS08275at 1850.125 kb on - strand, within PFLU_RS08275at 1850.129 kb on + strand, within PFLU_RS08275at 1850.130 kb on - strand, within PFLU_RS08275at 1850.130 kb on - strand, within PFLU_RS08275at 1850.130 kb on - strand, within PFLU_RS08275at 1850.193 kb on - strand, within PFLU_RS08275at 1850.278 kb on + strand, within PFLU_RS08275at 1850.340 kb on + strandat 1850.417 kb on + strand, within PFLU_RS08280at 1850.445 kb on + strand, within PFLU_RS08280at 1850.482 kb on + strand, within PFLU_RS08280at 1850.588 kb on + strand, within PFLU_RS08280at 1850.590 kb on + strand, within PFLU_RS08280at 1850.616 kb on + strand, within PFLU_RS08280at 1850.616 kb on + strand, within PFLU_RS08280at 1850.657 kb on + strand, within PFLU_RS08280at 1850.744 kb on + strandat 1850.750 kb on + strandat 1850.751 kb on - strandat 1850.754 kb on + strandat 1850.755 kb on - strandat 1850.792 kb on + strandat 1850.793 kb on - strandat 1850.851 kb on - strandat 1850.887 kb on + strand, within PFLU_RS08285at 1850.898 kb on - strand, within PFLU_RS08285at 1850.925 kb on - strand, within PFLU_RS08285at 1850.979 kb on - strand, within PFLU_RS08285at 1850.980 kb on + strand, within PFLU_RS08285at 1850.994 kb on - strand, within PFLU_RS08285at 1851.002 kb on - strand, within PFLU_RS08285at 1851.009 kb on + strand, within PFLU_RS08285at 1851.028 kb on + strand, within PFLU_RS08285at 1851.039 kb on + strand, within PFLU_RS08285at 1851.047 kb on - strand, within PFLU_RS08285at 1851.070 kb on + strand, within PFLU_RS08285at 1851.070 kb on + strand, within PFLU_RS08285at 1851.125 kb on + strand, within PFLU_RS08285at 1851.288 kb on + strandat 1851.289 kb on - strandat 1851.407 kb on - strandat 1851.453 kb on + strandat 1851.504 kb on + strandat 1851.513 kb on + strandat 1851.519 kb on + strandat 1851.520 kb on - strandat 1851.520 kb on - strandat 1851.520 kb on - strandat 1851.543 kb on + strandat 1851.610 kb on - strandat 1851.637 kb on - strandat 1851.637 kb on - strandat 1851.677 kb on - strandat 1851.677 kb on - strandat 1851.677 kb on - strandat 1851.677 kb on - strandat 1851.677 kb on - strandat 1851.962 kb on + strand, within PFLU_RS08290at 1851.962 kb on + strand, within PFLU_RS08290at 1851.962 kb on + strand, within PFLU_RS08290at 1851.962 kb on + strand, within PFLU_RS08290at 1851.965 kb on + strand, within PFLU_RS08290at 1851.965 kb on + strand, within PFLU_RS08290at 1851.965 kb on + strand, within PFLU_RS08290at 1851.965 kb on + strand, within PFLU_RS08290at 1851.965 kb on + strand, within PFLU_RS08290at 1851.965 kb on + strand, within PFLU_RS08290at 1851.965 kb on + strand, within PFLU_RS08290at 1851.965 kb on + strand, within PFLU_RS08290at 1851.965 kb on + strand, within PFLU_RS08290at 1851.965 kb on + strand, within PFLU_RS08290at 1851.965 kb on + strand, within PFLU_RS08290at 1851.965 kb on + strand, within PFLU_RS08290at 1851.965 kb on + strand, within PFLU_RS08290at 1851.965 kb on + strand, within PFLU_RS08290at 1851.965 kb on + strand, within PFLU_RS08290at 1851.966 kb on - strand, within PFLU_RS08290at 1851.966 kb on - strand, within PFLU_RS08290at 1851.966 kb on - strand, within PFLU_RS08290at 1851.966 kb on - strand, within PFLU_RS08290at 1851.966 kb on - strand, within PFLU_RS08290at 1851.966 kb on - strand, within PFLU_RS08290at 1851.966 kb on - strand, within PFLU_RS08290at 1851.966 kb on - strand, within PFLU_RS08290at 1851.966 kb on - strand, within PFLU_RS08290at 1851.966 kb on - strand, within PFLU_RS08290at 1851.968 kb on + strand, within PFLU_RS08290at 1851.968 kb on + strand, within PFLU_RS08290at 1851.968 kb on + strand, within PFLU_RS08290at 1851.968 kb on + strand, within PFLU_RS08290at 1851.968 kb on + strand, within PFLU_RS08290at 1851.968 kb on + strand, within PFLU_RS08290at 1851.969 kb on - strand, within PFLU_RS08290at 1851.969 kb on - strand, within PFLU_RS08290at 1851.969 kb on - strand, within PFLU_RS08290at 1851.969 kb on - strand, within PFLU_RS08290at 1851.969 kb on - strand, within PFLU_RS08290at 1851.969 kb on - strand, within PFLU_RS08290at 1852.034 kb on + strand, within PFLU_RS08290at 1852.034 kb on + strand, within PFLU_RS08290at 1852.034 kb on + strand, within PFLU_RS08290at 1852.034 kb on + strand, within PFLU_RS08290at 1852.034 kb on + strand, within PFLU_RS08290at 1852.034 kb on + strand, within PFLU_RS08290at 1852.035 kb on - strand, within PFLU_RS08290at 1852.035 kb on - strand, within PFLU_RS08290at 1852.035 kb on - strand, within PFLU_RS08290at 1852.040 kb on + strand, within PFLU_RS08290at 1852.040 kb on + strand, within PFLU_RS08290at 1852.040 kb on + strand, within PFLU_RS08290at 1852.040 kb on + strand, within PFLU_RS08290at 1852.040 kb on + strand, within PFLU_RS08290at 1852.040 kb on + strand, within PFLU_RS08290at 1852.040 kb on + strand, within PFLU_RS08290at 1852.040 kb on + strand, within PFLU_RS08290at 1852.040 kb on + strand, within PFLU_RS08290at 1852.040 kb on + strand, within PFLU_RS08290at 1852.040 kb on + strand, within PFLU_RS08290at 1852.040 kb on + strand, within PFLU_RS08290at 1852.041 kb on - strand, within PFLU_RS08290at 1852.041 kb on - strand, within PFLU_RS08290at 1852.041 kb on - strand, within PFLU_RS08290at 1852.041 kb on - strand, within PFLU_RS08290at 1852.041 kb on - strand, within PFLU_RS08290at 1852.041 kb on - strand, within PFLU_RS08290at 1852.041 kb on - strand, within PFLU_RS08290at 1852.041 kb on - strand, within PFLU_RS08290at 1852.041 kb on - strand, within PFLU_RS08290at 1852.041 kb on - strand, within PFLU_RS08290at 1852.041 kb on - strand, within PFLU_RS08290at 1852.041 kb on - strand, within PFLU_RS08290at 1852.041 kb on - strand, within PFLU_RS08290at 1852.041 kb on - strand, within PFLU_RS08290at 1852.041 kb on - strand, within PFLU_RS08290at 1852.041 kb on - strand, within PFLU_RS08290at 1852.041 kb on - strand, within PFLU_RS08290at 1852.041 kb on - strand, within PFLU_RS08290at 1852.108 kb on - strand, within PFLU_RS08290at 1852.132 kb on - strand, within PFLU_RS08290at 1852.132 kb on - strand, within PFLU_RS08290at 1852.152 kb on - strand, within PFLU_RS08290at 1852.157 kb on + strand, within PFLU_RS08290

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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1,849,861 + +0.1
1,849,861 + -0.5
1,849,862 - -1.4
1,849,862 - +1.9
1,849,862 - +0.4
1,849,909 + +1.2
1,849,909 + +1.1
1,849,909 + +1.9
1,849,909 + -0.1
1,849,909 + -0.3
1,849,910 - +1.6
1,849,910 - -0.4
1,849,946 + +0.3
1,849,946 + +1.0
1,849,947 - -1.3
1,850,022 - PFLU_RS08275 0.22 +0.7
1,850,022 - PFLU_RS08275 0.22 +1.5
1,850,022 - PFLU_RS08275 0.22 +1.9
1,850,022 - PFLU_RS08275 0.22 -2.9
1,850,076 + PFLU_RS08275 0.36 -0.7
1,850,077 - PFLU_RS08275 0.36 -0.1
1,850,096 + PFLU_RS08275 0.41 -1.4
1,850,096 + PFLU_RS08275 0.41 -0.7
1,850,096 + PFLU_RS08275 0.41 +0.0
1,850,096 + PFLU_RS08275 0.41 -1.9
1,850,097 - PFLU_RS08275 0.41 -2.3
1,850,097 - PFLU_RS08275 0.41 -1.9
1,850,116 + PFLU_RS08275 0.46 +1.3
1,850,116 + PFLU_RS08275 0.46 -1.9
1,850,119 + PFLU_RS08275 0.47 -1.1
1,850,119 + PFLU_RS08275 0.47 -0.4
1,850,119 + PFLU_RS08275 0.47 +0.6
1,850,120 - PFLU_RS08275 0.47 -1.3
1,850,125 - PFLU_RS08275 0.49 +0.5
1,850,129 + PFLU_RS08275 0.50 -0.7
1,850,130 - PFLU_RS08275 0.50 -0.3
1,850,130 - PFLU_RS08275 0.50 +0.7
1,850,130 - PFLU_RS08275 0.50 -0.6
1,850,193 - PFLU_RS08275 0.66 -0.0
1,850,278 + PFLU_RS08275 0.88 +1.5
1,850,340 + +1.2
1,850,417 + PFLU_RS08280 0.12 -1.3
1,850,445 + PFLU_RS08280 0.19 -0.2
1,850,482 + PFLU_RS08280 0.28 -0.1
1,850,588 + PFLU_RS08280 0.54 -0.7
1,850,590 + PFLU_RS08280 0.55 +1.2
1,850,616 + PFLU_RS08280 0.61 +2.0
1,850,616 + PFLU_RS08280 0.61 +0.0
1,850,657 + PFLU_RS08280 0.71 +1.1
1,850,744 + +0.3
1,850,750 + +1.4
1,850,751 - +0.3
1,850,754 + +2.2
1,850,755 - -1.1
1,850,792 + -0.4
1,850,793 - +1.4
1,850,851 - -0.6
1,850,887 + PFLU_RS08285 0.16 -0.4
1,850,898 - PFLU_RS08285 0.19 +2.2
1,850,925 - PFLU_RS08285 0.26 -0.9
1,850,979 - PFLU_RS08285 0.39 +0.3
1,850,980 + PFLU_RS08285 0.39 -0.6
1,850,994 - PFLU_RS08285 0.43 +0.2
1,851,002 - PFLU_RS08285 0.45 -0.4
1,851,009 + PFLU_RS08285 0.47 -2.2
1,851,028 + PFLU_RS08285 0.51 -0.2
1,851,039 + PFLU_RS08285 0.54 -0.1
1,851,047 - PFLU_RS08285 0.56 -0.1
1,851,070 + PFLU_RS08285 0.62 -3.2
1,851,070 + PFLU_RS08285 0.62 +0.8
1,851,125 + PFLU_RS08285 0.75 -3.0
1,851,288 + -0.0
1,851,289 - -0.0
1,851,407 - +1.9
1,851,453 + -0.2
1,851,504 + -0.8
1,851,513 + +0.6
1,851,519 + -0.8
1,851,520 - -1.0
1,851,520 - -1.3
1,851,520 - -0.5
1,851,543 + -0.8
1,851,610 - -0.4
1,851,637 - -1.4
1,851,637 - -1.9
1,851,677 - -0.6
1,851,677 - -0.3
1,851,677 - -1.1
1,851,677 - -0.3
1,851,677 - -0.4
1,851,962 + PFLU_RS08290 0.16 +0.2
1,851,962 + PFLU_RS08290 0.16 +0.2
1,851,962 + PFLU_RS08290 0.16 +0.1
1,851,962 + PFLU_RS08290 0.16 +0.1
1,851,965 + PFLU_RS08290 0.16 +0.6
1,851,965 + PFLU_RS08290 0.16 +0.3
1,851,965 + PFLU_RS08290 0.16 +1.6
1,851,965 + PFLU_RS08290 0.16 -2.8
1,851,965 + PFLU_RS08290 0.16 +0.6
1,851,965 + PFLU_RS08290 0.16 +1.1
1,851,965 + PFLU_RS08290 0.16 -2.5
1,851,965 + PFLU_RS08290 0.16 -0.0
1,851,965 + PFLU_RS08290 0.16 +0.9
1,851,965 + PFLU_RS08290 0.16 +0.0
1,851,965 + PFLU_RS08290 0.16 +0.6
1,851,965 + PFLU_RS08290 0.16 +0.9
1,851,965 + PFLU_RS08290 0.16 -0.4
1,851,965 + PFLU_RS08290 0.16 -0.2
1,851,965 + PFLU_RS08290 0.16 -1.1
1,851,966 - PFLU_RS08290 0.16 +1.9
1,851,966 - PFLU_RS08290 0.16 +1.1
1,851,966 - PFLU_RS08290 0.16 +1.2
1,851,966 - PFLU_RS08290 0.16 -1.3
1,851,966 - PFLU_RS08290 0.16 -1.6
1,851,966 - PFLU_RS08290 0.16 -0.2
1,851,966 - PFLU_RS08290 0.16 -0.8
1,851,966 - PFLU_RS08290 0.16 +0.3
1,851,966 - PFLU_RS08290 0.16 +0.4
1,851,966 - PFLU_RS08290 0.16 +0.5
1,851,968 + PFLU_RS08290 0.16 +0.4
1,851,968 + PFLU_RS08290 0.16 -0.5
1,851,968 + PFLU_RS08290 0.16 -1.8
1,851,968 + PFLU_RS08290 0.16 -1.0
1,851,968 + PFLU_RS08290 0.16 +0.7
1,851,968 + PFLU_RS08290 0.16 +0.5
1,851,969 - PFLU_RS08290 0.16 +0.2
1,851,969 - PFLU_RS08290 0.16 -3.3
1,851,969 - PFLU_RS08290 0.16 +0.5
1,851,969 - PFLU_RS08290 0.16 -0.4
1,851,969 - PFLU_RS08290 0.16 -0.9
1,851,969 - PFLU_RS08290 0.16 -1.8
1,852,034 + PFLU_RS08290 0.17 +0.6
1,852,034 + PFLU_RS08290 0.17 +0.6
1,852,034 + PFLU_RS08290 0.17 -1.8
1,852,034 + PFLU_RS08290 0.17 +0.8
1,852,034 + PFLU_RS08290 0.17 -0.4
1,852,034 + PFLU_RS08290 0.17 -1.3
1,852,035 - PFLU_RS08290 0.17 -0.3
1,852,035 - PFLU_RS08290 0.17 +1.6
1,852,035 - PFLU_RS08290 0.17 -1.3
1,852,040 + PFLU_RS08290 0.17 -0.6
1,852,040 + PFLU_RS08290 0.17 -1.6
1,852,040 + PFLU_RS08290 0.17 -1.3
1,852,040 + PFLU_RS08290 0.17 +0.2
1,852,040 + PFLU_RS08290 0.17 +0.9
1,852,040 + PFLU_RS08290 0.17 +0.1
1,852,040 + PFLU_RS08290 0.17 +0.5
1,852,040 + PFLU_RS08290 0.17 -1.4
1,852,040 + PFLU_RS08290 0.17 +0.8
1,852,040 + PFLU_RS08290 0.17 +0.6
1,852,040 + PFLU_RS08290 0.17 -1.5
1,852,040 + PFLU_RS08290 0.17 +0.4
1,852,041 - PFLU_RS08290 0.17 -0.8
1,852,041 - PFLU_RS08290 0.17 -1.0
1,852,041 - PFLU_RS08290 0.17 -0.1
1,852,041 - PFLU_RS08290 0.17 +0.3
1,852,041 - PFLU_RS08290 0.17 +0.5
1,852,041 - PFLU_RS08290 0.17 +0.5
1,852,041 - PFLU_RS08290 0.17 -3.1
1,852,041 - PFLU_RS08290 0.17 +0.4
1,852,041 - PFLU_RS08290 0.17 +0.9
1,852,041 - PFLU_RS08290 0.17 +0.3
1,852,041 - PFLU_RS08290 0.17 +1.3
1,852,041 - PFLU_RS08290 0.17 +1.0
1,852,041 - PFLU_RS08290 0.17 +1.7
1,852,041 - PFLU_RS08290 0.17 -1.1
1,852,041 - PFLU_RS08290 0.17 -1.0
1,852,041 - PFLU_RS08290 0.17 -0.9
1,852,041 - PFLU_RS08290 0.17 -2.9
1,852,041 - PFLU_RS08290 0.17 +1.3
1,852,108 - PFLU_RS08290 0.19 +0.2
1,852,132 - PFLU_RS08290 0.19 +1.6
1,852,132 - PFLU_RS08290 0.19 -0.1
1,852,152 - PFLU_RS08290 0.20 +1.2
1,852,157 + PFLU_RS08290 0.20 +1.4

Or see this region's nucleotide sequence