Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS03115

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS03105 and PFLU_RS03110 are separated by 146 nucleotidesPFLU_RS03110 and PFLU_RS03115 overlap by 4 nucleotidesPFLU_RS03115 and PFLU_RS03120 are separated by 24 nucleotidesPFLU_RS03120 and PFLU_RS03125 are separated by 45 nucleotides PFLU_RS03105: PFLU_RS03105 - peptidoglycan glycosyltransferase PbpC, at 719,540 to 721,870 _RS03105 PFLU_RS03110: PFLU_RS03110 - pyrophosphatase, at 722,017 to 722,322 _RS03110 PFLU_RS03115: PFLU_RS03115 - methyltransferase domain-containing protein, at 722,319 to 723,068 _RS03115 PFLU_RS03120: PFLU_RS03120 - DUF4136 domain-containing protein, at 723,093 to 723,695 _RS03120 PFLU_RS03125: PFLU_RS03125 - DUF4136 domain-containing protein, at 723,741 to 724,298 _RS03125 Position (kb) 722 723 724Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 721.868 kb on + strandat 721.868 kb on + strandat 721.869 kb on - strandat 721.869 kb on - strandat 721.869 kb on - strandat 721.869 kb on - strandat 721.869 kb on - strandat 721.869 kb on - strandat 721.869 kb on - strandat 721.995 kb on - strandat 721.995 kb on - strandat 722.230 kb on + strand, within PFLU_RS03110at 722.230 kb on + strand, within PFLU_RS03110at 722.230 kb on + strand, within PFLU_RS03110at 722.230 kb on + strand, within PFLU_RS03110at 722.231 kb on - strand, within PFLU_RS03110at 722.231 kb on - strand, within PFLU_RS03110at 722.231 kb on - strand, within PFLU_RS03110at 722.231 kb on - strand, within PFLU_RS03110at 722.231 kb on - strand, within PFLU_RS03110at 722.231 kb on - strand, within PFLU_RS03110at 722.231 kb on - strand, within PFLU_RS03110at 722.231 kb on - strand, within PFLU_RS03110at 722.480 kb on + strand, within PFLU_RS03115at 722.480 kb on + strand, within PFLU_RS03115at 722.480 kb on + strand, within PFLU_RS03115at 722.480 kb on + strand, within PFLU_RS03115at 722.480 kb on + strand, within PFLU_RS03115at 722.480 kb on + strand, within PFLU_RS03115at 722.480 kb on + strand, within PFLU_RS03115at 722.480 kb on + strand, within PFLU_RS03115at 722.480 kb on + strand, within PFLU_RS03115at 722.480 kb on + strand, within PFLU_RS03115at 722.481 kb on - strand, within PFLU_RS03115at 722.481 kb on - strand, within PFLU_RS03115at 722.481 kb on - strand, within PFLU_RS03115at 722.481 kb on - strand, within PFLU_RS03115at 722.481 kb on - strand, within PFLU_RS03115at 722.481 kb on - strand, within PFLU_RS03115at 722.481 kb on - strand, within PFLU_RS03115at 722.481 kb on - strand, within PFLU_RS03115at 722.481 kb on - strand, within PFLU_RS03115at 722.641 kb on - strand, within PFLU_RS03115at 722.641 kb on - strand, within PFLU_RS03115at 722.751 kb on + strand, within PFLU_RS03115at 722.752 kb on - strand, within PFLU_RS03115at 722.752 kb on - strand, within PFLU_RS03115at 722.752 kb on - strand, within PFLU_RS03115at 722.929 kb on + strand, within PFLU_RS03115at 722.940 kb on + strand, within PFLU_RS03115at 722.940 kb on + strand, within PFLU_RS03115at 722.940 kb on + strand, within PFLU_RS03115at 722.940 kb on + strand, within PFLU_RS03115at 722.940 kb on + strand, within PFLU_RS03115at 722.940 kb on + strand, within PFLU_RS03115at 722.940 kb on + strand, within PFLU_RS03115at 722.940 kb on + strand, within PFLU_RS03115at 722.940 kb on + strand, within PFLU_RS03115at 722.940 kb on + strand, within PFLU_RS03115at 722.940 kb on + strand, within PFLU_RS03115at 722.940 kb on + strand, within PFLU_RS03115at 722.940 kb on + strand, within PFLU_RS03115at 722.941 kb on - strand, within PFLU_RS03115at 722.941 kb on - strand, within PFLU_RS03115at 722.941 kb on - strand, within PFLU_RS03115at 722.941 kb on - strand, within PFLU_RS03115at 722.941 kb on - strand, within PFLU_RS03115at 722.941 kb on - strand, within PFLU_RS03115at 722.941 kb on - strand, within PFLU_RS03115at 722.941 kb on - strand, within PFLU_RS03115at 722.941 kb on - strand, within PFLU_RS03115at 722.941 kb on - strand, within PFLU_RS03115at 722.941 kb on - strand, within PFLU_RS03115at 722.941 kb on - strand, within PFLU_RS03115at 722.941 kb on - strand, within PFLU_RS03115at 722.941 kb on - strand, within PFLU_RS03115at 722.942 kb on + strand, within PFLU_RS03115at 722.942 kb on + strand, within PFLU_RS03115at 722.942 kb on + strand, within PFLU_RS03115at 722.942 kb on + strand, within PFLU_RS03115at 722.942 kb on + strand, within PFLU_RS03115at 722.942 kb on + strand, within PFLU_RS03115at 722.942 kb on + strand, within PFLU_RS03115at 722.942 kb on + strand, within PFLU_RS03115at 722.942 kb on + strand, within PFLU_RS03115at 722.942 kb on + strand, within PFLU_RS03115at 722.943 kb on - strand, within PFLU_RS03115at 722.943 kb on - strand, within PFLU_RS03115at 722.943 kb on - strand, within PFLU_RS03115at 722.943 kb on - strand, within PFLU_RS03115at 722.943 kb on - strand, within PFLU_RS03115at 722.943 kb on - strand, within PFLU_RS03115at 722.943 kb on - strand, within PFLU_RS03115at 722.943 kb on - strand, within PFLU_RS03115at 722.943 kb on - strand, within PFLU_RS03115at 722.943 kb on - strand, within PFLU_RS03115at 723.149 kb on + strandat 723.156 kb on + strand, within PFLU_RS03120at 723.156 kb on + strand, within PFLU_RS03120at 723.156 kb on + strand, within PFLU_RS03120at 723.157 kb on - strand, within PFLU_RS03120at 723.157 kb on - strand, within PFLU_RS03120at 723.157 kb on - strand, within PFLU_RS03120at 723.157 kb on - strand, within PFLU_RS03120at 723.255 kb on + strand, within PFLU_RS03120at 723.450 kb on + strand, within PFLU_RS03120at 723.472 kb on - strand, within PFLU_RS03120at 723.473 kb on + strand, within PFLU_RS03120at 723.480 kb on + strand, within PFLU_RS03120at 723.501 kb on + strand, within PFLU_RS03120at 723.501 kb on + strand, within PFLU_RS03120at 723.501 kb on + strand, within PFLU_RS03120at 723.501 kb on + strand, within PFLU_RS03120at 723.501 kb on + strand, within PFLU_RS03120at 723.501 kb on + strand, within PFLU_RS03120at 723.501 kb on + strand, within PFLU_RS03120at 723.501 kb on + strand, within PFLU_RS03120at 723.502 kb on - strand, within PFLU_RS03120at 723.502 kb on - strand, within PFLU_RS03120at 723.502 kb on - strand, within PFLU_RS03120at 723.502 kb on - strand, within PFLU_RS03120at 723.502 kb on - strand, within PFLU_RS03120at 723.502 kb on - strand, within PFLU_RS03120at 723.528 kb on + strand, within PFLU_RS03120at 723.528 kb on + strand, within PFLU_RS03120at 723.528 kb on + strand, within PFLU_RS03120at 723.528 kb on + strand, within PFLU_RS03120at 723.528 kb on + strand, within PFLU_RS03120at 723.529 kb on - strand, within PFLU_RS03120at 723.529 kb on - strand, within PFLU_RS03120at 723.529 kb on - strand, within PFLU_RS03120at 723.529 kb on - strand, within PFLU_RS03120at 723.682 kb on - strandat 723.694 kb on - strandat 723.700 kb on + strandat 723.753 kb on - strandat 723.763 kb on + strandat 723.764 kb on - strandat 723.764 kb on - strandat 723.764 kb on - strandat 723.764 kb on - strandat 723.764 kb on - strandat 723.843 kb on + strand, within PFLU_RS03125at 723.879 kb on + strand, within PFLU_RS03125at 724.015 kb on - strand, within PFLU_RS03125at 724.015 kb on - strand, within PFLU_RS03125at 724.056 kb on + strand, within PFLU_RS03125at 724.056 kb on + strand, within PFLU_RS03125at 724.056 kb on + strand, within PFLU_RS03125at 724.056 kb on + strand, within PFLU_RS03125at 724.057 kb on - strand, within PFLU_RS03125at 724.057 kb on - strand, within PFLU_RS03125at 724.057 kb on - strand, within PFLU_RS03125

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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721,868 + -1.7
721,868 + +0.1
721,869 - -0.3
721,869 - -0.1
721,869 - +0.1
721,869 - +0.2
721,869 - +1.2
721,869 - +1.8
721,869 - -0.2
721,995 - -1.0
721,995 - -1.3
722,230 + PFLU_RS03110 0.70 -0.2
722,230 + PFLU_RS03110 0.70 -2.3
722,230 + PFLU_RS03110 0.70 -0.5
722,230 + PFLU_RS03110 0.70 -0.0
722,231 - PFLU_RS03110 0.70 -0.1
722,231 - PFLU_RS03110 0.70 -0.1
722,231 - PFLU_RS03110 0.70 +1.8
722,231 - PFLU_RS03110 0.70 -0.1
722,231 - PFLU_RS03110 0.70 +0.3
722,231 - PFLU_RS03110 0.70 -0.0
722,231 - PFLU_RS03110 0.70 -0.1
722,231 - PFLU_RS03110 0.70 +0.0
722,480 + PFLU_RS03115 0.21 +0.6
722,480 + PFLU_RS03115 0.21 +1.5
722,480 + PFLU_RS03115 0.21 +2.2
722,480 + PFLU_RS03115 0.21 -0.3
722,480 + PFLU_RS03115 0.21 -0.7
722,480 + PFLU_RS03115 0.21 -0.3
722,480 + PFLU_RS03115 0.21 -0.3
722,480 + PFLU_RS03115 0.21 +0.9
722,480 + PFLU_RS03115 0.21 +1.0
722,480 + PFLU_RS03115 0.21 +0.8
722,481 - PFLU_RS03115 0.22 -0.5
722,481 - PFLU_RS03115 0.22 +1.1
722,481 - PFLU_RS03115 0.22 +1.0
722,481 - PFLU_RS03115 0.22 +1.2
722,481 - PFLU_RS03115 0.22 -1.9
722,481 - PFLU_RS03115 0.22 +0.1
722,481 - PFLU_RS03115 0.22 -0.4
722,481 - PFLU_RS03115 0.22 +0.4
722,481 - PFLU_RS03115 0.22 +1.0
722,641 - PFLU_RS03115 0.43 -0.2
722,641 - PFLU_RS03115 0.43 -2.5
722,751 + PFLU_RS03115 0.58 +0.6
722,752 - PFLU_RS03115 0.58 +2.2
722,752 - PFLU_RS03115 0.58 +0.5
722,752 - PFLU_RS03115 0.58 -2.5
722,929 + PFLU_RS03115 0.81 +0.2
722,940 + PFLU_RS03115 0.83 -0.6
722,940 + PFLU_RS03115 0.83 -1.1
722,940 + PFLU_RS03115 0.83 -0.0
722,940 + PFLU_RS03115 0.83 +0.2
722,940 + PFLU_RS03115 0.83 +2.1
722,940 + PFLU_RS03115 0.83 +0.5
722,940 + PFLU_RS03115 0.83 +0.4
722,940 + PFLU_RS03115 0.83 +1.6
722,940 + PFLU_RS03115 0.83 -2.4
722,940 + PFLU_RS03115 0.83 +1.1
722,940 + PFLU_RS03115 0.83 -1.6
722,940 + PFLU_RS03115 0.83 +2.0
722,940 + PFLU_RS03115 0.83 +2.1
722,941 - PFLU_RS03115 0.83 -0.3
722,941 - PFLU_RS03115 0.83 -0.0
722,941 - PFLU_RS03115 0.83 -0.2
722,941 - PFLU_RS03115 0.83 +1.0
722,941 - PFLU_RS03115 0.83 -0.5
722,941 - PFLU_RS03115 0.83 -0.5
722,941 - PFLU_RS03115 0.83 -0.3
722,941 - PFLU_RS03115 0.83 +0.5
722,941 - PFLU_RS03115 0.83 -0.4
722,941 - PFLU_RS03115 0.83 +1.4
722,941 - PFLU_RS03115 0.83 +0.8
722,941 - PFLU_RS03115 0.83 +0.7
722,941 - PFLU_RS03115 0.83 +0.6
722,941 - PFLU_RS03115 0.83 -1.9
722,942 + PFLU_RS03115 0.83 +0.0
722,942 + PFLU_RS03115 0.83 +1.5
722,942 + PFLU_RS03115 0.83 +0.8
722,942 + PFLU_RS03115 0.83 +2.3
722,942 + PFLU_RS03115 0.83 +0.5
722,942 + PFLU_RS03115 0.83 +0.6
722,942 + PFLU_RS03115 0.83 +0.5
722,942 + PFLU_RS03115 0.83 +0.7
722,942 + PFLU_RS03115 0.83 +0.8
722,942 + PFLU_RS03115 0.83 +0.4
722,943 - PFLU_RS03115 0.83 -0.2
722,943 - PFLU_RS03115 0.83 +0.4
722,943 - PFLU_RS03115 0.83 +0.7
722,943 - PFLU_RS03115 0.83 +1.8
722,943 - PFLU_RS03115 0.83 -0.8
722,943 - PFLU_RS03115 0.83 +0.4
722,943 - PFLU_RS03115 0.83 +0.6
722,943 - PFLU_RS03115 0.83 +0.1
722,943 - PFLU_RS03115 0.83 -0.5
722,943 - PFLU_RS03115 0.83 -1.6
723,149 + +0.9
723,156 + PFLU_RS03120 0.10 +0.3
723,156 + PFLU_RS03120 0.10 -0.2
723,156 + PFLU_RS03120 0.10 +0.2
723,157 - PFLU_RS03120 0.11 +0.5
723,157 - PFLU_RS03120 0.11 +0.9
723,157 - PFLU_RS03120 0.11 -0.1
723,157 - PFLU_RS03120 0.11 -0.6
723,255 + PFLU_RS03120 0.27 +1.1
723,450 + PFLU_RS03120 0.59 -2.7
723,472 - PFLU_RS03120 0.63 +0.3
723,473 + PFLU_RS03120 0.63 -1.3
723,480 + PFLU_RS03120 0.64 +2.1
723,501 + PFLU_RS03120 0.68 +1.5
723,501 + PFLU_RS03120 0.68 -2.7
723,501 + PFLU_RS03120 0.68 +0.5
723,501 + PFLU_RS03120 0.68 -0.1
723,501 + PFLU_RS03120 0.68 +0.4
723,501 + PFLU_RS03120 0.68 +1.2
723,501 + PFLU_RS03120 0.68 +0.3
723,501 + PFLU_RS03120 0.68 -0.6
723,502 - PFLU_RS03120 0.68 +1.6
723,502 - PFLU_RS03120 0.68 +1.1
723,502 - PFLU_RS03120 0.68 +0.2
723,502 - PFLU_RS03120 0.68 +0.1
723,502 - PFLU_RS03120 0.68 +0.3
723,502 - PFLU_RS03120 0.68 +0.3
723,528 + PFLU_RS03120 0.72 -0.9
723,528 + PFLU_RS03120 0.72 +0.9
723,528 + PFLU_RS03120 0.72 +0.9
723,528 + PFLU_RS03120 0.72 +0.4
723,528 + PFLU_RS03120 0.72 -0.2
723,529 - PFLU_RS03120 0.72 -0.9
723,529 - PFLU_RS03120 0.72 +0.5
723,529 - PFLU_RS03120 0.72 +0.6
723,529 - PFLU_RS03120 0.72 -3.3
723,682 - +2.4
723,694 - +1.8
723,700 + +0.4
723,753 - +0.5
723,763 + +0.2
723,764 - +0.5
723,764 - -0.2
723,764 - +3.8
723,764 - -0.4
723,764 - -1.1
723,843 + PFLU_RS03125 0.18 -1.3
723,879 + PFLU_RS03125 0.25 +1.7
724,015 - PFLU_RS03125 0.49 +2.0
724,015 - PFLU_RS03125 0.49 +0.4
724,056 + PFLU_RS03125 0.56 -2.6
724,056 + PFLU_RS03125 0.56 -0.6
724,056 + PFLU_RS03125 0.56 -2.0
724,056 + PFLU_RS03125 0.56 -0.5
724,057 - PFLU_RS03125 0.57 -1.6
724,057 - PFLU_RS03125 0.57 +0.3
724,057 - PFLU_RS03125 0.57 -0.2

Or see this region's nucleotide sequence