Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS01625 and PFLU_RS01630 are separated by 66 nucleotides PFLU_RS01630 and PFLU_RS01635 are separated by 3 nucleotides PFLU_RS01635 and PFLU_RS01640 are separated by 88 nucleotides PFLU_RS01640 and PFLU_RS01645 are separated by 1 nucleotides
PFLU_RS01625: PFLU_RS01625 - imidazole glycerol phosphate synthase subunit HisF, at 362,916 to 363,686
_RS01625
PFLU_RS01630: PFLU_RS01630 - ABC transporter substrate-binding protein, at 363,753 to 364,508
_RS01630
PFLU_RS01635: PFLU_RS01635 - serine protease, at 364,512 to 366,077
_RS01635
PFLU_RS01640: PFLU_RS01640 - divergent polysaccharide deacetylase family protein, at 366,166 to 366,954
_RS01640
PFLU_RS01645: PFLU_RS01645 - S41 family peptidase, at 366,956 to 368,272
_RS01645
Position (kb) 364
365
366
367 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 363.612 kb on - strand at 363.631 kb on - strand at 363.631 kb on - strand at 363.631 kb on - strand at 363.654 kb on + strand at 363.654 kb on + strand at 363.655 kb on - strand at 363.655 kb on - strand at 363.655 kb on - strand at 363.655 kb on - strand at 363.655 kb on - strand at 363.655 kb on - strand at 363.785 kb on + strand at 363.786 kb on - strand at 363.786 kb on - strand at 363.786 kb on - strand at 363.870 kb on + strand, within PFLU_RS01630 at 363.870 kb on + strand, within PFLU_RS01630 at 363.972 kb on + strand, within PFLU_RS01630 at 363.972 kb on + strand, within PFLU_RS01630 at 364.008 kb on + strand, within PFLU_RS01630 at 364.009 kb on - strand, within PFLU_RS01630 at 364.009 kb on - strand, within PFLU_RS01630 at 364.036 kb on - strand, within PFLU_RS01630 at 364.137 kb on - strand, within PFLU_RS01630 at 364.137 kb on - strand, within PFLU_RS01630 at 364.137 kb on - strand, within PFLU_RS01630 at 364.137 kb on - strand, within PFLU_RS01630 at 364.176 kb on + strand, within PFLU_RS01630 at 364.191 kb on + strand, within PFLU_RS01630 at 364.193 kb on + strand, within PFLU_RS01630 at 364.194 kb on - strand, within PFLU_RS01630 at 364.235 kb on + strand, within PFLU_RS01630 at 364.236 kb on - strand, within PFLU_RS01630 at 364.380 kb on - strand, within PFLU_RS01630 at 364.380 kb on - strand, within PFLU_RS01630 at 364.396 kb on - strand, within PFLU_RS01630 at 364.500 kb on + strand at 364.500 kb on + strand at 364.501 kb on - strand at 364.501 kb on - strand at 364.501 kb on - strand at 364.506 kb on + strand at 364.507 kb on - strand at 364.573 kb on + strand at 364.573 kb on + strand at 364.573 kb on + strand at 364.573 kb on + strand at 364.574 kb on - strand at 364.574 kb on - strand at 364.574 kb on - strand at 364.610 kb on + strand at 364.611 kb on - strand at 364.777 kb on + strand, within PFLU_RS01635 at 364.777 kb on + strand, within PFLU_RS01635 at 364.777 kb on + strand, within PFLU_RS01635 at 364.778 kb on - strand, within PFLU_RS01635 at 364.778 kb on - strand, within PFLU_RS01635 at 364.778 kb on - strand, within PFLU_RS01635 at 364.783 kb on + strand, within PFLU_RS01635 at 364.784 kb on - strand, within PFLU_RS01635 at 364.793 kb on + strand, within PFLU_RS01635 at 364.793 kb on + strand, within PFLU_RS01635 at 364.793 kb on + strand, within PFLU_RS01635 at 364.794 kb on - strand, within PFLU_RS01635 at 364.794 kb on - strand, within PFLU_RS01635 at 364.825 kb on + strand, within PFLU_RS01635 at 364.825 kb on + strand, within PFLU_RS01635 at 364.825 kb on + strand, within PFLU_RS01635 at 364.826 kb on - strand, within PFLU_RS01635 at 364.826 kb on - strand, within PFLU_RS01635 at 365.044 kb on + strand, within PFLU_RS01635 at 365.044 kb on + strand, within PFLU_RS01635 at 365.045 kb on - strand, within PFLU_RS01635 at 365.079 kb on + strand, within PFLU_RS01635 at 365.089 kb on + strand, within PFLU_RS01635 at 365.089 kb on + strand, within PFLU_RS01635 at 365.090 kb on - strand, within PFLU_RS01635 at 365.090 kb on - strand, within PFLU_RS01635 at 365.090 kb on - strand, within PFLU_RS01635 at 365.111 kb on + strand, within PFLU_RS01635 at 365.142 kb on - strand, within PFLU_RS01635 at 365.176 kb on + strand, within PFLU_RS01635 at 365.176 kb on + strand, within PFLU_RS01635 at 365.176 kb on + strand, within PFLU_RS01635 at 365.177 kb on - strand, within PFLU_RS01635 at 365.177 kb on - strand, within PFLU_RS01635 at 365.177 kb on - strand, within PFLU_RS01635 at 365.177 kb on - strand, within PFLU_RS01635 at 365.224 kb on + strand, within PFLU_RS01635 at 365.302 kb on + strand, within PFLU_RS01635 at 365.302 kb on + strand, within PFLU_RS01635 at 365.303 kb on - strand, within PFLU_RS01635 at 365.303 kb on - strand, within PFLU_RS01635 at 365.303 kb on - strand, within PFLU_RS01635 at 365.303 kb on - strand, within PFLU_RS01635 at 365.303 kb on - strand, within PFLU_RS01635 at 365.303 kb on - strand, within PFLU_RS01635 at 365.303 kb on - strand, within PFLU_RS01635 at 365.306 kb on + strand, within PFLU_RS01635 at 365.306 kb on + strand, within PFLU_RS01635 at 365.306 kb on + strand, within PFLU_RS01635 at 365.306 kb on + strand, within PFLU_RS01635 at 365.306 kb on + strand, within PFLU_RS01635 at 365.306 kb on + strand, within PFLU_RS01635 at 365.307 kb on - strand, within PFLU_RS01635 at 365.396 kb on + strand, within PFLU_RS01635 at 365.396 kb on + strand, within PFLU_RS01635 at 365.396 kb on + strand, within PFLU_RS01635 at 365.396 kb on + strand, within PFLU_RS01635 at 365.397 kb on - strand, within PFLU_RS01635 at 365.397 kb on - strand, within PFLU_RS01635 at 365.421 kb on - strand, within PFLU_RS01635 at 365.421 kb on - strand, within PFLU_RS01635 at 365.421 kb on - strand, within PFLU_RS01635 at 365.421 kb on - strand, within PFLU_RS01635 at 365.494 kb on - strand, within PFLU_RS01635 at 365.613 kb on + strand, within PFLU_RS01635 at 365.613 kb on + strand, within PFLU_RS01635 at 365.613 kb on + strand, within PFLU_RS01635 at 365.613 kb on + strand, within PFLU_RS01635 at 365.613 kb on + strand, within PFLU_RS01635 at 365.614 kb on - strand, within PFLU_RS01635 at 365.614 kb on - strand, within PFLU_RS01635 at 365.614 kb on - strand, within PFLU_RS01635 at 365.614 kb on - strand, within PFLU_RS01635 at 365.614 kb on - strand, within PFLU_RS01635 at 365.614 kb on - strand, within PFLU_RS01635 at 365.614 kb on - strand, within PFLU_RS01635 at 365.672 kb on + strand, within PFLU_RS01635 at 365.673 kb on - strand, within PFLU_RS01635 at 365.711 kb on + strand, within PFLU_RS01635 at 365.738 kb on - strand, within PFLU_RS01635 at 365.770 kb on + strand, within PFLU_RS01635 at 365.771 kb on - strand, within PFLU_RS01635 at 365.771 kb on - strand, within PFLU_RS01635 at 365.783 kb on + strand, within PFLU_RS01635 at 365.784 kb on - strand, within PFLU_RS01635 at 365.784 kb on - strand, within PFLU_RS01635 at 365.784 kb on - strand, within PFLU_RS01635 at 365.796 kb on + strand, within PFLU_RS01635 at 365.797 kb on - strand, within PFLU_RS01635 at 365.797 kb on - strand, within PFLU_RS01635 at 365.797 kb on - strand, within PFLU_RS01635 at 365.857 kb on + strand, within PFLU_RS01635 at 365.857 kb on + strand, within PFLU_RS01635 at 365.858 kb on - strand, within PFLU_RS01635 at 365.858 kb on - strand, within PFLU_RS01635 at 365.858 kb on - strand, within PFLU_RS01635 at 365.898 kb on + strand, within PFLU_RS01635 at 365.898 kb on + strand, within PFLU_RS01635 at 365.957 kb on + strand at 365.957 kb on + strand at 365.957 kb on + strand at 365.957 kb on + strand at 365.957 kb on + strand at 365.958 kb on - strand at 365.958 kb on - strand at 365.958 kb on - strand at 365.958 kb on - strand at 365.958 kb on - strand at 365.958 kb on - strand at 365.958 kb on - strand at 365.958 kb on - strand at 365.958 kb on - strand at 365.958 kb on - strand at 365.958 kb on - strand at 365.958 kb on - strand at 365.958 kb on - strand at 365.958 kb on - strand at 366.039 kb on + strand at 366.039 kb on + strand at 366.040 kb on - strand at 366.040 kb on - strand at 366.043 kb on + strand at 366.043 kb on + strand at 366.043 kb on + strand at 366.043 kb on + strand at 366.043 kb on + strand at 366.043 kb on + strand at 366.043 kb on + strand at 366.043 kb on + strand at 366.043 kb on + strand at 366.044 kb on - strand at 366.044 kb on - strand at 366.044 kb on - strand at 366.044 kb on - strand at 366.044 kb on - strand at 366.134 kb on + strand at 366.134 kb on + strand at 366.135 kb on - strand at 366.135 kb on - strand at 366.164 kb on - strand at 366.164 kb on - strand at 366.167 kb on + strand at 366.167 kb on + strand at 366.167 kb on + strand at 366.167 kb on + strand at 366.167 kb on + strand at 366.167 kb on + strand at 366.167 kb on + strand at 366.167 kb on + strand at 366.167 kb on + strand at 366.167 kb on + strand at 366.167 kb on + strand at 366.167 kb on + strand at 366.167 kb on + strand at 366.167 kb on + strand at 366.168 kb on - strand at 366.168 kb on - strand at 366.168 kb on - strand at 366.168 kb on - strand at 366.168 kb on - strand at 366.168 kb on - strand at 366.168 kb on - strand at 366.168 kb on - strand at 366.168 kb on - strand at 366.168 kb on - strand at 366.168 kb on - strand at 366.168 kb on - strand at 366.168 kb on - strand at 366.168 kb on - strand at 366.168 kb on - strand at 366.171 kb on + strand at 366.189 kb on - strand at 366.189 kb on - strand at 366.253 kb on - strand, within PFLU_RS01640 at 366.393 kb on + strand, within PFLU_RS01640 at 366.607 kb on - strand, within PFLU_RS01640 at 366.608 kb on + strand, within PFLU_RS01640 at 366.608 kb on + strand, within PFLU_RS01640 at 366.608 kb on + strand, within PFLU_RS01640 at 366.955 kb on - strand at 366.955 kb on - strand at 367.014 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 363,612 - -1.6 363,631 - -0.7 363,631 - -1.1 363,631 - -1.7 363,654 + -2.6 363,654 + -2.8 363,655 - -2.2 363,655 - -0.3 363,655 - -2.6 363,655 - -0.8 363,655 - -0.3 363,655 - +1.5 363,785 + -1.8 363,786 - +2.0 363,786 - -0.5 363,786 - +0.4 363,870 + PFLU_RS01630 0.15 -0.8 363,870 + PFLU_RS01630 0.15 +1.2 363,972 + PFLU_RS01630 0.29 -0.5 363,972 + PFLU_RS01630 0.29 +2.8 364,008 + PFLU_RS01630 0.34 +0.2 364,009 - PFLU_RS01630 0.34 -1.6 364,009 - PFLU_RS01630 0.34 +1.8 364,036 - PFLU_RS01630 0.37 -2.5 364,137 - PFLU_RS01630 0.51 -1.6 364,137 - PFLU_RS01630 0.51 -2.5 364,137 - PFLU_RS01630 0.51 -0.8 364,137 - PFLU_RS01630 0.51 -2.0 364,176 + PFLU_RS01630 0.56 +1.3 364,191 + PFLU_RS01630 0.58 +0.7 364,193 + PFLU_RS01630 0.58 +0.4 364,194 - PFLU_RS01630 0.58 -0.0 364,235 + PFLU_RS01630 0.64 +1.4 364,236 - PFLU_RS01630 0.64 -1.2 364,380 - PFLU_RS01630 0.83 +0.6 364,380 - PFLU_RS01630 0.83 -0.2 364,396 - PFLU_RS01630 0.85 -1.0 364,500 + -1.8 364,500 + +1.1 364,501 - +1.9 364,501 - -0.7 364,501 - -1.2 364,506 + +0.6 364,507 - +1.5 364,573 + -1.0 364,573 + +1.5 364,573 + -1.9 364,573 + +1.3 364,574 - -1.3 364,574 - -0.5 364,574 - +0.5 364,610 + +0.1 364,611 - +0.4 364,777 + PFLU_RS01635 0.17 -0.1 364,777 + PFLU_RS01635 0.17 +0.7 364,777 + PFLU_RS01635 0.17 +0.9 364,778 - PFLU_RS01635 0.17 -0.8 364,778 - PFLU_RS01635 0.17 +0.3 364,778 - PFLU_RS01635 0.17 +1.4 364,783 + PFLU_RS01635 0.17 +0.2 364,784 - PFLU_RS01635 0.17 -1.1 364,793 + PFLU_RS01635 0.18 +0.8 364,793 + PFLU_RS01635 0.18 -0.2 364,793 + PFLU_RS01635 0.18 +0.2 364,794 - PFLU_RS01635 0.18 -1.9 364,794 - PFLU_RS01635 0.18 -1.4 364,825 + PFLU_RS01635 0.20 +0.5 364,825 + PFLU_RS01635 0.20 -1.5 364,825 + PFLU_RS01635 0.20 -0.3 364,826 - PFLU_RS01635 0.20 +2.0 364,826 - PFLU_RS01635 0.20 -0.4 365,044 + PFLU_RS01635 0.34 +0.5 365,044 + PFLU_RS01635 0.34 -1.0 365,045 - PFLU_RS01635 0.34 -1.1 365,079 + PFLU_RS01635 0.36 +0.5 365,089 + PFLU_RS01635 0.37 +0.1 365,089 + PFLU_RS01635 0.37 -0.9 365,090 - PFLU_RS01635 0.37 -0.0 365,090 - PFLU_RS01635 0.37 -0.5 365,090 - PFLU_RS01635 0.37 +1.1 365,111 + PFLU_RS01635 0.38 +1.9 365,142 - PFLU_RS01635 0.40 -0.8 365,176 + PFLU_RS01635 0.42 +1.1 365,176 + PFLU_RS01635 0.42 -1.5 365,176 + PFLU_RS01635 0.42 -0.8 365,177 - PFLU_RS01635 0.42 +1.8 365,177 - PFLU_RS01635 0.42 -0.5 365,177 - PFLU_RS01635 0.42 -2.2 365,177 - PFLU_RS01635 0.42 +0.3 365,224 + PFLU_RS01635 0.45 -1.0 365,302 + PFLU_RS01635 0.50 +1.4 365,302 + PFLU_RS01635 0.50 -0.6 365,303 - PFLU_RS01635 0.51 -2.2 365,303 - PFLU_RS01635 0.51 +2.7 365,303 - PFLU_RS01635 0.51 +0.5 365,303 - PFLU_RS01635 0.51 +1.9 365,303 - PFLU_RS01635 0.51 -0.7 365,303 - PFLU_RS01635 0.51 +1.8 365,303 - PFLU_RS01635 0.51 -0.3 365,306 + PFLU_RS01635 0.51 -0.4 365,306 + PFLU_RS01635 0.51 -0.8 365,306 + PFLU_RS01635 0.51 +0.4 365,306 + PFLU_RS01635 0.51 -1.5 365,306 + PFLU_RS01635 0.51 -0.8 365,306 + PFLU_RS01635 0.51 -2.0 365,307 - PFLU_RS01635 0.51 -0.8 365,396 + PFLU_RS01635 0.56 +0.3 365,396 + PFLU_RS01635 0.56 +0.4 365,396 + PFLU_RS01635 0.56 +1.4 365,396 + PFLU_RS01635 0.56 -0.4 365,397 - PFLU_RS01635 0.57 -1.2 365,397 - PFLU_RS01635 0.57 -1.2 365,421 - PFLU_RS01635 0.58 +1.7 365,421 - PFLU_RS01635 0.58 -0.6 365,421 - PFLU_RS01635 0.58 -0.7 365,421 - PFLU_RS01635 0.58 -0.0 365,494 - PFLU_RS01635 0.63 -0.7 365,613 + PFLU_RS01635 0.70 -0.8 365,613 + PFLU_RS01635 0.70 +0.6 365,613 + PFLU_RS01635 0.70 +0.5 365,613 + PFLU_RS01635 0.70 -0.4 365,613 + PFLU_RS01635 0.70 -0.2 365,614 - PFLU_RS01635 0.70 +1.3 365,614 - PFLU_RS01635 0.70 -0.5 365,614 - PFLU_RS01635 0.70 -0.4 365,614 - PFLU_RS01635 0.70 -1.1 365,614 - PFLU_RS01635 0.70 -0.0 365,614 - PFLU_RS01635 0.70 -0.6 365,614 - PFLU_RS01635 0.70 +0.1 365,672 + PFLU_RS01635 0.74 -0.5 365,673 - PFLU_RS01635 0.74 -2.2 365,711 + PFLU_RS01635 0.77 -0.8 365,738 - PFLU_RS01635 0.78 -0.3 365,770 + PFLU_RS01635 0.80 -0.7 365,771 - PFLU_RS01635 0.80 +0.9 365,771 - PFLU_RS01635 0.80 -0.6 365,783 + PFLU_RS01635 0.81 +0.1 365,784 - PFLU_RS01635 0.81 +0.5 365,784 - PFLU_RS01635 0.81 +1.9 365,784 - PFLU_RS01635 0.81 -0.2 365,796 + PFLU_RS01635 0.82 +0.5 365,797 - PFLU_RS01635 0.82 +0.3 365,797 - PFLU_RS01635 0.82 +0.8 365,797 - PFLU_RS01635 0.82 +0.2 365,857 + PFLU_RS01635 0.86 -0.3 365,857 + PFLU_RS01635 0.86 +1.3 365,858 - PFLU_RS01635 0.86 +0.7 365,858 - PFLU_RS01635 0.86 -0.1 365,858 - PFLU_RS01635 0.86 -0.6 365,898 + PFLU_RS01635 0.89 +0.9 365,898 + PFLU_RS01635 0.89 -1.3 365,957 + -0.6 365,957 + +0.8 365,957 + +0.8 365,957 + +0.1 365,957 + +0.6 365,958 - -0.4 365,958 - -0.7 365,958 - +1.1 365,958 - +0.8 365,958 - -2.0 365,958 - -2.7 365,958 - +1.6 365,958 - +0.6 365,958 - -1.6 365,958 - +0.3 365,958 - +1.7 365,958 - -0.7 365,958 - -0.2 365,958 - +1.2 366,039 + +0.1 366,039 + -1.1 366,040 - -0.6 366,040 - +0.9 366,043 + -0.6 366,043 + -0.2 366,043 + -0.4 366,043 + -0.7 366,043 + +0.4 366,043 + -0.6 366,043 + -1.4 366,043 + +2.5 366,043 + -0.8 366,044 - +0.7 366,044 - -0.4 366,044 - +1.6 366,044 - +0.1 366,044 - +0.9 366,134 + +0.8 366,134 + +0.5 366,135 - +0.6 366,135 - -1.5 366,164 - +0.5 366,164 - -0.5 366,167 + -1.6 366,167 + +1.5 366,167 + +1.0 366,167 + -0.3 366,167 + -1.0 366,167 + +0.0 366,167 + -1.8 366,167 + +0.1 366,167 + +0.3 366,167 + +0.1 366,167 + +0.4 366,167 + +1.5 366,167 + -1.4 366,167 + -0.5 366,168 - -0.2 366,168 - -1.8 366,168 - +0.8 366,168 - +1.2 366,168 - +0.5 366,168 - -0.1 366,168 - -0.4 366,168 - -0.6 366,168 - +0.5 366,168 - +0.8 366,168 - +0.6 366,168 - +0.2 366,168 - -1.8 366,168 - -1.8 366,168 - +1.3 366,171 + +1.2 366,189 - -0.0 366,189 - +0.2 366,253 - PFLU_RS01640 0.11 +0.6 366,393 + PFLU_RS01640 0.29 -0.3 366,607 - PFLU_RS01640 0.56 -0.1 366,608 + PFLU_RS01640 0.56 -0.7 366,608 + PFLU_RS01640 0.56 -0.8 366,608 + PFLU_RS01640 0.56 -1.3 366,955 - +1.6 366,955 - -0.1 367,014 + -4.4
Or see this region's nucleotide sequence