Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS00475 and PFLU_RS00480 are separated by 1 nucleotides PFLU_RS00480 and PFLU_RS00485 overlap by 4 nucleotides PFLU_RS00485 and PFLU_RS00490 are separated by 53 nucleotides
PFLU_RS00475: PFLU_RS00475 - MCE family protein, at 96,360 to 97,298
_RS00475
PFLU_RS00480: PFLU_RS00480 - ATP-binding cassette domain-containing protein, at 97,300 to 98,103
_RS00480
PFLU_RS00485: PFLU_RS00485 - ABC transporter permease, at 98,100 to 99,248
_RS00485
PFLU_RS00490: PFLU_RS00490 - DUF2914 domain-containing protein, at 99,302 to 100,333
_RS00490
Position (kb) 98
99
100 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 97.112 kb on + strand, within PFLU_RS00475 at 97.112 kb on + strand, within PFLU_RS00475 at 97.113 kb on - strand, within PFLU_RS00475 at 97.113 kb on - strand, within PFLU_RS00475 at 97.123 kb on + strand, within PFLU_RS00475 at 97.124 kb on - strand, within PFLU_RS00475 at 97.181 kb on - strand, within PFLU_RS00475 at 97.181 kb on - strand, within PFLU_RS00475 at 97.246 kb on - strand at 97.246 kb on - strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.361 kb on + strand at 97.362 kb on - strand at 97.463 kb on + strand, within PFLU_RS00480 at 97.464 kb on - strand, within PFLU_RS00480 at 97.464 kb on - strand, within PFLU_RS00480 at 97.464 kb on - strand, within PFLU_RS00480 at 97.464 kb on - strand, within PFLU_RS00480 at 97.464 kb on - strand, within PFLU_RS00480 at 97.464 kb on - strand, within PFLU_RS00480 at 97.464 kb on - strand, within PFLU_RS00480 at 97.464 kb on - strand, within PFLU_RS00480 at 97.464 kb on - strand, within PFLU_RS00480 at 97.464 kb on - strand, within PFLU_RS00480 at 97.667 kb on + strand, within PFLU_RS00480 at 97.667 kb on + strand, within PFLU_RS00480 at 97.668 kb on - strand, within PFLU_RS00480 at 97.763 kb on - strand, within PFLU_RS00480 at 97.997 kb on + strand, within PFLU_RS00480 at 97.997 kb on + strand, within PFLU_RS00480 at 97.997 kb on + strand, within PFLU_RS00480 at 97.997 kb on + strand, within PFLU_RS00480 at 97.997 kb on + strand, within PFLU_RS00480 at 97.997 kb on + strand, within PFLU_RS00480 at 97.997 kb on + strand, within PFLU_RS00480 at 97.997 kb on + strand, within PFLU_RS00480 at 97.998 kb on - strand, within PFLU_RS00480 at 97.998 kb on - strand, within PFLU_RS00480 at 97.998 kb on - strand, within PFLU_RS00480 at 97.998 kb on - strand, within PFLU_RS00480 at 97.998 kb on - strand, within PFLU_RS00480 at 97.998 kb on - strand, within PFLU_RS00480 at 97.998 kb on - strand, within PFLU_RS00480 at 97.998 kb on - strand, within PFLU_RS00480 at 97.998 kb on - strand, within PFLU_RS00480 at 97.998 kb on - strand, within PFLU_RS00480 at 97.998 kb on - strand, within PFLU_RS00480 at 97.998 kb on - strand, within PFLU_RS00480 at 98.092 kb on + strand at 98.092 kb on + strand at 98.092 kb on + strand at 98.093 kb on - strand at 98.093 kb on - strand at 98.093 kb on - strand at 98.093 kb on - strand at 98.093 kb on - strand at 98.093 kb on - strand at 98.348 kb on + strand, within PFLU_RS00485 at 98.348 kb on + strand, within PFLU_RS00485 at 98.349 kb on - strand, within PFLU_RS00485 at 98.433 kb on + strand, within PFLU_RS00485 at 98.442 kb on + strand, within PFLU_RS00485 at 98.655 kb on + strand, within PFLU_RS00485 at 98.655 kb on + strand, within PFLU_RS00485 at 98.862 kb on + strand, within PFLU_RS00485 at 98.951 kb on - strand, within PFLU_RS00485 at 99.096 kb on - strand, within PFLU_RS00485 at 99.112 kb on + strand, within PFLU_RS00485 at 99.112 kb on + strand, within PFLU_RS00485 at 99.112 kb on + strand, within PFLU_RS00485 at 99.112 kb on + strand, within PFLU_RS00485 at 99.112 kb on + strand, within PFLU_RS00485 at 99.113 kb on - strand, within PFLU_RS00485 at 99.113 kb on - strand, within PFLU_RS00485 at 99.113 kb on - strand, within PFLU_RS00485 at 99.154 kb on + strand at 99.155 kb on - strand at 99.155 kb on - strand at 99.179 kb on + strand at 99.209 kb on + strand at 99.209 kb on + strand at 99.210 kb on - strand at 99.210 kb on - strand at 99.210 kb on - strand at 99.236 kb on + strand at 99.236 kb on + strand at 99.237 kb on - strand at 99.237 kb on - strand at 99.248 kb on + strand at 99.248 kb on + strand at 99.248 kb on + strand at 99.248 kb on + strand at 99.248 kb on + strand at 99.248 kb on + strand at 99.248 kb on + strand at 99.248 kb on + strand at 99.249 kb on - strand at 99.249 kb on - strand at 99.249 kb on - strand at 99.249 kb on - strand at 99.249 kb on - strand at 99.281 kb on + strand at 99.281 kb on + strand at 99.282 kb on - strand at 99.282 kb on - strand at 99.285 kb on + strand at 99.285 kb on + strand at 99.285 kb on + strand at 99.285 kb on + strand at 99.285 kb on + strand at 99.285 kb on + strand at 99.285 kb on + strand at 99.285 kb on + strand at 99.285 kb on + strand at 99.285 kb on + strand at 99.286 kb on - strand at 99.286 kb on - strand at 99.286 kb on - strand at 99.286 kb on - strand at 99.286 kb on - strand at 99.286 kb on - strand at 99.286 kb on - strand at 99.286 kb on - strand at 99.286 kb on - strand at 99.286 kb on - strand at 99.286 kb on - strand at 99.286 kb on - strand at 99.288 kb on + strand at 99.288 kb on + strand at 99.288 kb on + strand at 99.288 kb on + strand at 99.288 kb on + strand at 99.289 kb on - strand at 99.289 kb on - strand at 99.289 kb on - strand at 99.303 kb on + strand at 99.303 kb on + strand at 99.304 kb on - strand at 99.304 kb on - strand at 99.386 kb on + strand at 99.386 kb on + strand at 99.387 kb on - strand at 99.387 kb on - strand at 99.519 kb on + strand, within PFLU_RS00490 at 99.520 kb on - strand, within PFLU_RS00490 at 99.561 kb on + strand, within PFLU_RS00490 at 99.561 kb on + strand, within PFLU_RS00490 at 99.561 kb on + strand, within PFLU_RS00490 at 99.561 kb on + strand, within PFLU_RS00490 at 99.737 kb on + strand, within PFLU_RS00490 at 99.737 kb on + strand, within PFLU_RS00490 at 99.738 kb on - strand, within PFLU_RS00490 at 99.738 kb on - strand, within PFLU_RS00490 at 99.828 kb on + strand, within PFLU_RS00490 at 99.828 kb on + strand, within PFLU_RS00490 at 99.829 kb on - strand, within PFLU_RS00490 at 99.829 kb on - strand, within PFLU_RS00490 at 99.829 kb on - strand, within PFLU_RS00490 at 99.829 kb on - strand, within PFLU_RS00490 at 99.829 kb on - strand, within PFLU_RS00490 at 99.829 kb on - strand, within PFLU_RS00490 at 99.829 kb on - strand, within PFLU_RS00490 at 99.829 kb on - strand, within PFLU_RS00490 at 99.942 kb on + strand, within PFLU_RS00490 at 99.942 kb on + strand, within PFLU_RS00490 at 99.943 kb on - strand, within PFLU_RS00490 at 99.945 kb on + strand, within PFLU_RS00490 at 99.945 kb on + strand, within PFLU_RS00490 at 99.945 kb on + strand, within PFLU_RS00490 at 99.945 kb on + strand, within PFLU_RS00490 at 99.945 kb on + strand, within PFLU_RS00490 at 99.945 kb on + strand, within PFLU_RS00490 at 99.945 kb on + strand, within PFLU_RS00490 at 99.946 kb on - strand, within PFLU_RS00490 at 100.086 kb on + strand, within PFLU_RS00490 at 100.141 kb on + strand, within PFLU_RS00490
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 97,112 + PFLU_RS00475 0.80 -1.6 97,112 + PFLU_RS00475 0.80 -2.2 97,113 - PFLU_RS00475 0.80 +0.8 97,113 - PFLU_RS00475 0.80 +1.0 97,123 + PFLU_RS00475 0.81 -0.2 97,124 - PFLU_RS00475 0.81 -2.1 97,181 - PFLU_RS00475 0.87 -0.3 97,181 - PFLU_RS00475 0.87 +0.5 97,246 - -0.6 97,246 - +0.3 97,303 + -0.1 97,303 + -0.9 97,303 + -1.6 97,303 + +0.3 97,303 + -0.8 97,303 + +0.5 97,303 + +2.5 97,304 - +2.5 97,304 - +1.5 97,304 - -0.2 97,304 - -1.3 97,304 - +0.7 97,304 - +1.5 97,361 + -0.9 97,362 - +1.2 97,463 + PFLU_RS00480 0.20 -1.0 97,464 - PFLU_RS00480 0.20 +2.0 97,464 - PFLU_RS00480 0.20 +0.1 97,464 - PFLU_RS00480 0.20 -1.8 97,464 - PFLU_RS00480 0.20 -0.2 97,464 - PFLU_RS00480 0.20 +1.1 97,464 - PFLU_RS00480 0.20 -0.7 97,464 - PFLU_RS00480 0.20 +1.3 97,464 - PFLU_RS00480 0.20 +0.7 97,464 - PFLU_RS00480 0.20 +1.1 97,464 - PFLU_RS00480 0.20 -2.6 97,667 + PFLU_RS00480 0.46 -0.6 97,667 + PFLU_RS00480 0.46 -0.2 97,668 - PFLU_RS00480 0.46 +0.2 97,763 - PFLU_RS00480 0.58 +1.6 97,997 + PFLU_RS00480 0.87 -2.2 97,997 + PFLU_RS00480 0.87 -0.2 97,997 + PFLU_RS00480 0.87 -1.8 97,997 + PFLU_RS00480 0.87 +1.4 97,997 + PFLU_RS00480 0.87 +0.1 97,997 + PFLU_RS00480 0.87 -0.5 97,997 + PFLU_RS00480 0.87 +0.3 97,997 + PFLU_RS00480 0.87 -0.7 97,998 - PFLU_RS00480 0.87 +0.4 97,998 - PFLU_RS00480 0.87 +0.9 97,998 - PFLU_RS00480 0.87 -1.0 97,998 - PFLU_RS00480 0.87 +2.0 97,998 - PFLU_RS00480 0.87 -1.3 97,998 - PFLU_RS00480 0.87 +0.2 97,998 - PFLU_RS00480 0.87 +1.3 97,998 - PFLU_RS00480 0.87 -0.7 97,998 - PFLU_RS00480 0.87 +0.4 97,998 - PFLU_RS00480 0.87 -0.3 97,998 - PFLU_RS00480 0.87 -1.6 97,998 - PFLU_RS00480 0.87 +0.2 98,092 + -2.0 98,092 + +1.4 98,092 + -0.1 98,093 - +0.5 98,093 - -0.7 98,093 - -1.0 98,093 - +2.0 98,093 - -0.3 98,093 - +1.0 98,348 + PFLU_RS00485 0.22 +0.3 98,348 + PFLU_RS00485 0.22 -3.0 98,349 - PFLU_RS00485 0.22 -1.3 98,433 + PFLU_RS00485 0.29 -3.4 98,442 + PFLU_RS00485 0.30 +0.7 98,655 + PFLU_RS00485 0.48 +0.5 98,655 + PFLU_RS00485 0.48 -0.4 98,862 + PFLU_RS00485 0.66 -0.9 98,951 - PFLU_RS00485 0.74 +1.1 99,096 - PFLU_RS00485 0.87 -0.1 99,112 + PFLU_RS00485 0.88 +0.3 99,112 + PFLU_RS00485 0.88 -1.9 99,112 + PFLU_RS00485 0.88 +0.1 99,112 + PFLU_RS00485 0.88 +0.7 99,112 + PFLU_RS00485 0.88 -1.0 99,113 - PFLU_RS00485 0.88 +0.9 99,113 - PFLU_RS00485 0.88 +2.4 99,113 - PFLU_RS00485 0.88 -0.8 99,154 + -1.2 99,155 - -0.1 99,155 - +0.6 99,179 + -0.5 99,209 + -0.1 99,209 + -0.6 99,210 - +0.9 99,210 - +0.5 99,210 - +0.4 99,236 + -0.6 99,236 + -3.2 99,237 - +1.4 99,237 - +1.2 99,248 + -2.4 99,248 + -0.1 99,248 + +0.1 99,248 + -2.1 99,248 + -1.3 99,248 + -2.6 99,248 + +1.1 99,248 + +0.5 99,249 - -2.3 99,249 - -1.4 99,249 - +1.0 99,249 - -0.8 99,249 - +0.8 99,281 + +1.1 99,281 + -2.3 99,282 - +0.1 99,282 - +2.1 99,285 + -1.3 99,285 + -2.1 99,285 + -0.3 99,285 + -1.1 99,285 + +1.2 99,285 + +1.7 99,285 + +0.9 99,285 + -0.0 99,285 + -2.2 99,285 + +0.2 99,286 - +0.7 99,286 - +0.9 99,286 - +1.5 99,286 - +2.7 99,286 - +0.6 99,286 - +0.9 99,286 - -1.3 99,286 - +0.4 99,286 - +1.4 99,286 - -0.7 99,286 - +0.2 99,286 - +1.2 99,288 + +0.7 99,288 + +0.6 99,288 + +1.0 99,288 + +0.3 99,288 + +0.5 99,289 - -0.8 99,289 - +1.1 99,289 - +1.3 99,303 + +0.1 99,303 + +0.5 99,304 - +1.3 99,304 - +0.3 99,386 + +0.2 99,386 + +1.3 99,387 - +0.0 99,387 - +0.8 99,519 + PFLU_RS00490 0.21 +0.1 99,520 - PFLU_RS00490 0.21 +1.1 99,561 + PFLU_RS00490 0.25 -1.7 99,561 + PFLU_RS00490 0.25 -1.5 99,561 + PFLU_RS00490 0.25 +0.0 99,561 + PFLU_RS00490 0.25 -1.0 99,737 + PFLU_RS00490 0.42 -0.4 99,737 + PFLU_RS00490 0.42 -0.6 99,738 - PFLU_RS00490 0.42 -0.3 99,738 - PFLU_RS00490 0.42 +0.7 99,828 + PFLU_RS00490 0.51 +1.4 99,828 + PFLU_RS00490 0.51 -2.1 99,829 - PFLU_RS00490 0.51 +1.5 99,829 - PFLU_RS00490 0.51 +0.3 99,829 - PFLU_RS00490 0.51 -1.5 99,829 - PFLU_RS00490 0.51 +0.1 99,829 - PFLU_RS00490 0.51 +1.9 99,829 - PFLU_RS00490 0.51 +1.5 99,829 - PFLU_RS00490 0.51 -0.5 99,829 - PFLU_RS00490 0.51 +0.1 99,942 + PFLU_RS00490 0.62 -2.7 99,942 + PFLU_RS00490 0.62 -3.1 99,943 - PFLU_RS00490 0.62 -0.4 99,945 + PFLU_RS00490 0.62 -1.6 99,945 + PFLU_RS00490 0.62 +0.1 99,945 + PFLU_RS00490 0.62 +0.1 99,945 + PFLU_RS00490 0.62 -1.4 99,945 + PFLU_RS00490 0.62 -1.6 99,945 + PFLU_RS00490 0.62 -1.5 99,945 + PFLU_RS00490 0.62 -2.8 99,946 - PFLU_RS00490 0.62 -0.1 100,086 + PFLU_RS00490 0.76 +2.4 100,141 + PFLU_RS00490 0.81 +0.4
Or see this region's nucleotide sequence