Strain Fitness in Pseudomonas sp. S08-1 around OH686_23275

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_23270 and OH686_23275 are separated by 152 nucleotidesOH686_23275 and OH686_23280 are separated by 94 nucleotides OH686_23270: OH686_23270 - Fumarylacetoacetate hydrolase family protein, at 4,715,404 to 4,716,360 _23270 OH686_23275: OH686_23275 - NADH dehydrogenase , at 4,716,513 to 4,717,589 _23275 OH686_23280: OH686_23280 - hypothetical protein, at 4,717,684 to 4,718,298 _23280 Position (kb) 4716 4717 4718Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4715.698 kb on + strand, within OH686_23270at 4715.698 kb on + strand, within OH686_23270at 4715.698 kb on + strand, within OH686_23270at 4715.699 kb on - strand, within OH686_23270at 4715.699 kb on - strand, within OH686_23270at 4715.699 kb on - strand, within OH686_23270at 4715.699 kb on - strand, within OH686_23270at 4715.699 kb on - strand, within OH686_23270at 4715.699 kb on - strand, within OH686_23270at 4715.699 kb on - strand, within OH686_23270at 4715.715 kb on + strand, within OH686_23270at 4715.715 kb on + strand, within OH686_23270at 4715.716 kb on - strand, within OH686_23270at 4715.772 kb on - strand, within OH686_23270at 4715.772 kb on - strand, within OH686_23270at 4715.800 kb on + strand, within OH686_23270at 4715.800 kb on + strand, within OH686_23270at 4715.800 kb on + strand, within OH686_23270at 4715.800 kb on + strand, within OH686_23270at 4715.800 kb on + strand, within OH686_23270at 4715.800 kb on + strand, within OH686_23270at 4715.801 kb on - strand, within OH686_23270at 4715.801 kb on - strand, within OH686_23270at 4715.801 kb on - strand, within OH686_23270at 4715.801 kb on - strand, within OH686_23270at 4715.801 kb on - strand, within OH686_23270at 4715.801 kb on - strand, within OH686_23270at 4715.801 kb on - strand, within OH686_23270at 4715.801 kb on - strand, within OH686_23270at 4715.801 kb on - strand, within OH686_23270at 4715.801 kb on - strand, within OH686_23270at 4715.805 kb on - strand, within OH686_23270at 4715.846 kb on + strand, within OH686_23270at 4715.846 kb on + strand, within OH686_23270at 4715.846 kb on + strand, within OH686_23270at 4715.846 kb on + strand, within OH686_23270at 4715.847 kb on - strand, within OH686_23270at 4715.847 kb on - strand, within OH686_23270at 4715.847 kb on - strand, within OH686_23270at 4716.024 kb on + strand, within OH686_23270at 4716.025 kb on - strand, within OH686_23270at 4716.129 kb on - strand, within OH686_23270at 4716.290 kb on - strandat 4716.346 kb on + strandat 4716.346 kb on + strandat 4716.346 kb on + strandat 4716.346 kb on + strandat 4716.347 kb on - strandat 4716.347 kb on - strandat 4716.347 kb on - strandat 4716.347 kb on - strandat 4716.347 kb on - strandat 4716.638 kb on + strand, within OH686_23275at 4716.638 kb on + strand, within OH686_23275at 4716.638 kb on + strand, within OH686_23275at 4716.638 kb on + strand, within OH686_23275at 4716.638 kb on + strand, within OH686_23275at 4716.638 kb on + strand, within OH686_23275at 4716.638 kb on + strand, within OH686_23275at 4716.639 kb on - strand, within OH686_23275at 4716.639 kb on - strand, within OH686_23275at 4716.639 kb on - strand, within OH686_23275at 4716.677 kb on + strand, within OH686_23275at 4716.677 kb on + strand, within OH686_23275at 4716.678 kb on - strand, within OH686_23275at 4716.724 kb on + strand, within OH686_23275at 4716.724 kb on + strand, within OH686_23275at 4716.760 kb on + strand, within OH686_23275at 4716.874 kb on + strand, within OH686_23275at 4716.890 kb on - strand, within OH686_23275at 4716.890 kb on - strand, within OH686_23275at 4717.033 kb on + strand, within OH686_23275at 4717.033 kb on + strand, within OH686_23275at 4717.033 kb on + strand, within OH686_23275at 4717.134 kb on - strand, within OH686_23275at 4717.397 kb on - strand, within OH686_23275at 4717.397 kb on - strand, within OH686_23275at 4717.397 kb on - strand, within OH686_23275at 4717.421 kb on + strand, within OH686_23275at 4717.422 kb on - strand, within OH686_23275at 4717.422 kb on - strand, within OH686_23275at 4717.422 kb on - strand, within OH686_23275at 4717.423 kb on + strand, within OH686_23275at 4717.423 kb on + strand, within OH686_23275at 4717.423 kb on + strand, within OH686_23275at 4717.423 kb on + strand, within OH686_23275at 4717.423 kb on + strand, within OH686_23275at 4717.423 kb on + strand, within OH686_23275at 4717.423 kb on + strand, within OH686_23275at 4717.423 kb on + strand, within OH686_23275at 4717.423 kb on + strand, within OH686_23275at 4717.423 kb on + strand, within OH686_23275at 4717.424 kb on - strand, within OH686_23275at 4717.424 kb on - strand, within OH686_23275at 4717.424 kb on - strand, within OH686_23275at 4717.424 kb on - strand, within OH686_23275at 4717.424 kb on - strand, within OH686_23275at 4717.424 kb on - strand, within OH686_23275at 4717.424 kb on - strand, within OH686_23275at 4717.424 kb on - strand, within OH686_23275at 4717.424 kb on - strand, within OH686_23275at 4717.424 kb on - strand, within OH686_23275at 4717.666 kb on + strandat 4717.666 kb on + strandat 4717.666 kb on + strandat 4717.667 kb on - strandat 4717.677 kb on + strandat 4717.677 kb on + strandat 4717.677 kb on + strandat 4717.708 kb on + strandat 4717.708 kb on + strandat 4717.709 kb on - strandat 4717.896 kb on - strand, within OH686_23280at 4717.909 kb on + strand, within OH686_23280at 4717.910 kb on - strand, within OH686_23280at 4717.944 kb on - strand, within OH686_23280at 4717.969 kb on - strand, within OH686_23280at 4718.168 kb on + strand, within OH686_23280at 4718.168 kb on + strand, within OH686_23280at 4718.168 kb on + strand, within OH686_23280at 4718.168 kb on + strand, within OH686_23280at 4718.168 kb on + strand, within OH686_23280at 4718.168 kb on + strand, within OH686_23280at 4718.168 kb on + strand, within OH686_23280at 4718.168 kb on + strand, within OH686_23280at 4718.168 kb on + strand, within OH686_23280at 4718.169 kb on - strand, within OH686_23280at 4718.169 kb on - strand, within OH686_23280at 4718.169 kb on - strand, within OH686_23280at 4718.169 kb on - strand, within OH686_23280at 4718.169 kb on - strand, within OH686_23280at 4718.169 kb on - strand, within OH686_23280at 4718.169 kb on - strand, within OH686_23280at 4718.169 kb on - strand, within OH686_23280at 4718.169 kb on - strand, within OH686_23280at 4718.169 kb on - strand, within OH686_23280at 4718.169 kb on - strand, within OH686_23280at 4718.169 kb on - strand, within OH686_23280at 4718.268 kb on + strandat 4718.268 kb on + strandat 4718.269 kb on - strandat 4718.390 kb on + strandat 4718.481 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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4,715,698 + OH686_23270 0.31 +0.8
4,715,698 + OH686_23270 0.31 -0.3
4,715,698 + OH686_23270 0.31 +1.6
4,715,699 - OH686_23270 0.31 -1.8
4,715,699 - OH686_23270 0.31 +0.2
4,715,699 - OH686_23270 0.31 -2.0
4,715,699 - OH686_23270 0.31 -3.6
4,715,699 - OH686_23270 0.31 +0.0
4,715,699 - OH686_23270 0.31 -0.2
4,715,699 - OH686_23270 0.31 -0.9
4,715,715 + OH686_23270 0.32 -1.2
4,715,715 + OH686_23270 0.32 +0.1
4,715,716 - OH686_23270 0.33 -1.5
4,715,772 - OH686_23270 0.38 +0.5
4,715,772 - OH686_23270 0.38 +0.1
4,715,800 + OH686_23270 0.41 -1.6
4,715,800 + OH686_23270 0.41 -0.1
4,715,800 + OH686_23270 0.41 +1.0
4,715,800 + OH686_23270 0.41 -0.6
4,715,800 + OH686_23270 0.41 +0.6
4,715,800 + OH686_23270 0.41 +0.2
4,715,801 - OH686_23270 0.41 +0.0
4,715,801 - OH686_23270 0.41 +0.8
4,715,801 - OH686_23270 0.41 -1.2
4,715,801 - OH686_23270 0.41 +1.0
4,715,801 - OH686_23270 0.41 -0.4
4,715,801 - OH686_23270 0.41 -0.3
4,715,801 - OH686_23270 0.41 +0.8
4,715,801 - OH686_23270 0.41 -1.9
4,715,801 - OH686_23270 0.41 +0.7
4,715,801 - OH686_23270 0.41 +0.4
4,715,805 - OH686_23270 0.42 +0.7
4,715,846 + OH686_23270 0.46 -0.2
4,715,846 + OH686_23270 0.46 -1.9
4,715,846 + OH686_23270 0.46 +1.4
4,715,846 + OH686_23270 0.46 -1.3
4,715,847 - OH686_23270 0.46 -0.5
4,715,847 - OH686_23270 0.46 +0.1
4,715,847 - OH686_23270 0.46 +0.1
4,716,024 + OH686_23270 0.65 -0.8
4,716,025 - OH686_23270 0.65 -0.7
4,716,129 - OH686_23270 0.76 +0.2
4,716,290 - +0.6
4,716,346 + +0.1
4,716,346 + +0.2
4,716,346 + +0.1
4,716,346 + +1.0
4,716,347 - +0.1
4,716,347 - +1.4
4,716,347 - -0.6
4,716,347 - -0.2
4,716,347 - -0.7
4,716,638 + OH686_23275 0.12 -0.5
4,716,638 + OH686_23275 0.12 +0.1
4,716,638 + OH686_23275 0.12 +0.6
4,716,638 + OH686_23275 0.12 -0.3
4,716,638 + OH686_23275 0.12 -1.0
4,716,638 + OH686_23275 0.12 +0.7
4,716,638 + OH686_23275 0.12 +0.7
4,716,639 - OH686_23275 0.12 +1.3
4,716,639 - OH686_23275 0.12 -1.0
4,716,639 - OH686_23275 0.12 -1.3
4,716,677 + OH686_23275 0.15 -1.9
4,716,677 + OH686_23275 0.15 +0.1
4,716,678 - OH686_23275 0.15 +1.8
4,716,724 + OH686_23275 0.20 -0.0
4,716,724 + OH686_23275 0.20 -0.6
4,716,760 + OH686_23275 0.23 -0.6
4,716,874 + OH686_23275 0.34 -1.3
4,716,890 - OH686_23275 0.35 +0.5
4,716,890 - OH686_23275 0.35 +0.7
4,717,033 + OH686_23275 0.48 -0.7
4,717,033 + OH686_23275 0.48 -0.3
4,717,033 + OH686_23275 0.48 -0.0
4,717,134 - OH686_23275 0.58 -0.1
4,717,397 - OH686_23275 0.82 +0.4
4,717,397 - OH686_23275 0.82 -1.0
4,717,397 - OH686_23275 0.82 -0.2
4,717,421 + OH686_23275 0.84 -0.1
4,717,422 - OH686_23275 0.84 +0.3
4,717,422 - OH686_23275 0.84 -0.9
4,717,422 - OH686_23275 0.84 -0.5
4,717,423 + OH686_23275 0.84 -0.4
4,717,423 + OH686_23275 0.84 +0.8
4,717,423 + OH686_23275 0.84 -0.9
4,717,423 + OH686_23275 0.84 -1.8
4,717,423 + OH686_23275 0.84 -0.2
4,717,423 + OH686_23275 0.84 +1.0
4,717,423 + OH686_23275 0.84 -0.3
4,717,423 + OH686_23275 0.84 -0.2
4,717,423 + OH686_23275 0.84 +0.1
4,717,423 + OH686_23275 0.84 -0.1
4,717,424 - OH686_23275 0.85 +0.4
4,717,424 - OH686_23275 0.85 -1.3
4,717,424 - OH686_23275 0.85 +0.4
4,717,424 - OH686_23275 0.85 -1.0
4,717,424 - OH686_23275 0.85 +0.7
4,717,424 - OH686_23275 0.85 +0.1
4,717,424 - OH686_23275 0.85 +0.2
4,717,424 - OH686_23275 0.85 -0.4
4,717,424 - OH686_23275 0.85 -0.4
4,717,424 - OH686_23275 0.85 +0.7
4,717,666 + +0.3
4,717,666 + +1.5
4,717,666 + +0.4
4,717,667 - -1.2
4,717,677 + +0.3
4,717,677 + +0.2
4,717,677 + +0.4
4,717,708 + +0.6
4,717,708 + -2.3
4,717,709 - -0.9
4,717,896 - OH686_23280 0.34 -0.5
4,717,909 + OH686_23280 0.37 +0.5
4,717,910 - OH686_23280 0.37 -0.2
4,717,944 - OH686_23280 0.42 -1.0
4,717,969 - OH686_23280 0.46 +1.5
4,718,168 + OH686_23280 0.79 -0.3
4,718,168 + OH686_23280 0.79 -0.4
4,718,168 + OH686_23280 0.79 -0.8
4,718,168 + OH686_23280 0.79 +1.3
4,718,168 + OH686_23280 0.79 +0.2
4,718,168 + OH686_23280 0.79 -1.5
4,718,168 + OH686_23280 0.79 +1.6
4,718,168 + OH686_23280 0.79 +0.4
4,718,168 + OH686_23280 0.79 +0.7
4,718,169 - OH686_23280 0.79 -0.6
4,718,169 - OH686_23280 0.79 -1.5
4,718,169 - OH686_23280 0.79 -0.6
4,718,169 - OH686_23280 0.79 -0.1
4,718,169 - OH686_23280 0.79 +0.8
4,718,169 - OH686_23280 0.79 +0.3
4,718,169 - OH686_23280 0.79 -0.5
4,718,169 - OH686_23280 0.79 -2.0
4,718,169 - OH686_23280 0.79 +0.0
4,718,169 - OH686_23280 0.79 -1.3
4,718,169 - OH686_23280 0.79 +0.8
4,718,169 - OH686_23280 0.79 -2.1
4,718,268 + -0.5
4,718,268 + -0.0
4,718,269 - -0.3
4,718,390 + +0.4
4,718,481 + -0.0

Or see this region's nucleotide sequence