Strain Fitness in Pseudomonas sp. S08-1 around OH686_13325

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_13320 and OH686_13325 are separated by 120 nucleotidesOH686_13325 and OH686_13330 overlap by 8 nucleotides OH686_13320: OH686_13320 - LysR-family transcriptional regulator, at 2,800,845 to 2,801,756 _13320 OH686_13325: OH686_13325 - Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake, at 2,801,877 to 2,803,199 _13325 OH686_13330: OH686_13330 - Signal transduction histidine kinase regulating C4-dicarboxylate transport system , at 2,803,192 to 2,805,060 _13330 Position (kb) 2801 2802 2803 2804Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2801.007 kb on - strand, within OH686_13320at 2801.289 kb on + strand, within OH686_13320at 2801.290 kb on - strand, within OH686_13320at 2801.290 kb on - strand, within OH686_13320at 2801.290 kb on - strand, within OH686_13320at 2801.290 kb on - strand, within OH686_13320at 2801.292 kb on + strand, within OH686_13320at 2801.292 kb on + strand, within OH686_13320at 2801.292 kb on + strand, within OH686_13320at 2801.292 kb on + strand, within OH686_13320at 2801.293 kb on - strand, within OH686_13320at 2801.293 kb on - strand, within OH686_13320at 2801.293 kb on - strand, within OH686_13320at 2801.293 kb on - strand, within OH686_13320at 2801.293 kb on - strand, within OH686_13320at 2801.293 kb on - strand, within OH686_13320at 2801.442 kb on + strand, within OH686_13320at 2801.443 kb on - strand, within OH686_13320at 2801.443 kb on - strand, within OH686_13320at 2801.517 kb on + strand, within OH686_13320at 2801.518 kb on - strand, within OH686_13320at 2801.518 kb on - strand, within OH686_13320at 2801.673 kb on + strandat 2801.673 kb on + strandat 2801.755 kb on - strandat 2801.755 kb on - strandat 2801.755 kb on - strandat 2801.795 kb on + strandat 2801.796 kb on - strandat 2801.796 kb on - strandat 2801.796 kb on - strandat 2801.797 kb on + strandat 2801.797 kb on + strandat 2801.798 kb on - strandat 2801.846 kb on - strandat 2801.846 kb on - strandat 2801.878 kb on + strandat 2801.878 kb on + strandat 2801.879 kb on - strandat 2801.879 kb on - strandat 2801.879 kb on - strandat 2801.887 kb on + strandat 2801.887 kb on + strandat 2801.887 kb on + strandat 2801.888 kb on - strandat 2801.888 kb on - strandat 2801.888 kb on - strandat 2801.888 kb on - strandat 2801.888 kb on - strandat 2801.888 kb on - strandat 2801.888 kb on - strandat 2802.286 kb on + strand, within OH686_13325at 2802.287 kb on - strand, within OH686_13325at 2802.289 kb on + strand, within OH686_13325at 2802.289 kb on + strand, within OH686_13325at 2802.289 kb on + strand, within OH686_13325at 2802.289 kb on + strand, within OH686_13325at 2802.289 kb on + strand, within OH686_13325at 2802.289 kb on + strand, within OH686_13325at 2802.289 kb on + strand, within OH686_13325at 2802.290 kb on - strand, within OH686_13325at 2802.290 kb on - strand, within OH686_13325at 2802.290 kb on - strand, within OH686_13325at 2802.290 kb on - strand, within OH686_13325at 2802.290 kb on - strand, within OH686_13325at 2802.290 kb on - strand, within OH686_13325at 2802.417 kb on + strand, within OH686_13325at 2802.417 kb on + strand, within OH686_13325at 2802.901 kb on + strand, within OH686_13325at 2802.901 kb on + strand, within OH686_13325at 2803.047 kb on + strand, within OH686_13325at 2803.047 kb on + strand, within OH686_13325at 2803.047 kb on + strand, within OH686_13325at 2803.047 kb on + strand, within OH686_13325at 2803.048 kb on - strand, within OH686_13325at 2803.048 kb on - strand, within OH686_13325at 2803.048 kb on - strand, within OH686_13325at 2803.048 kb on - strand, within OH686_13325at 2803.048 kb on - strand, within OH686_13325at 2803.048 kb on - strand, within OH686_13325at 2803.179 kb on + strandat 2803.179 kb on + strandat 2803.179 kb on + strandat 2803.180 kb on - strandat 2803.180 kb on - strandat 2803.180 kb on - strandat 2804.163 kb on + strand, within OH686_13330at 2804.163 kb on + strand, within OH686_13330at 2804.163 kb on + strand, within OH686_13330at 2804.164 kb on - strand, within OH686_13330at 2804.164 kb on - strand, within OH686_13330at 2804.164 kb on - strand, within OH686_13330

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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2,801,007 - OH686_13320 0.18 -1.5
2,801,289 + OH686_13320 0.49 -0.7
2,801,290 - OH686_13320 0.49 -0.5
2,801,290 - OH686_13320 0.49 -0.0
2,801,290 - OH686_13320 0.49 -0.9
2,801,290 - OH686_13320 0.49 +1.6
2,801,292 + OH686_13320 0.49 -1.5
2,801,292 + OH686_13320 0.49 +1.5
2,801,292 + OH686_13320 0.49 -0.2
2,801,292 + OH686_13320 0.49 +0.2
2,801,293 - OH686_13320 0.49 -0.1
2,801,293 - OH686_13320 0.49 -0.8
2,801,293 - OH686_13320 0.49 +1.0
2,801,293 - OH686_13320 0.49 -1.8
2,801,293 - OH686_13320 0.49 -0.7
2,801,293 - OH686_13320 0.49 -1.7
2,801,442 + OH686_13320 0.65 -1.9
2,801,443 - OH686_13320 0.66 -2.3
2,801,443 - OH686_13320 0.66 +1.1
2,801,517 + OH686_13320 0.74 -1.0
2,801,518 - OH686_13320 0.74 -1.6
2,801,518 - OH686_13320 0.74 -0.4
2,801,673 + +1.7
2,801,673 + -0.5
2,801,755 - +0.5
2,801,755 - -1.5
2,801,755 - +0.4
2,801,795 + -0.4
2,801,796 - +0.6
2,801,796 - +1.4
2,801,796 - -1.8
2,801,797 + +0.4
2,801,797 + +0.1
2,801,798 - +1.1
2,801,846 - +0.2
2,801,846 - -0.7
2,801,878 + +0.7
2,801,878 + +1.1
2,801,879 - -0.4
2,801,879 - +1.5
2,801,879 - +0.6
2,801,887 + -0.2
2,801,887 + -0.2
2,801,887 + +2.6
2,801,888 - -2.5
2,801,888 - -1.8
2,801,888 - -0.0
2,801,888 - -1.7
2,801,888 - -0.7
2,801,888 - -1.5
2,801,888 - +0.6
2,802,286 + OH686_13325 0.31 +0.0
2,802,287 - OH686_13325 0.31 -1.8
2,802,289 + OH686_13325 0.31 +0.3
2,802,289 + OH686_13325 0.31 -0.8
2,802,289 + OH686_13325 0.31 +1.1
2,802,289 + OH686_13325 0.31 -1.1
2,802,289 + OH686_13325 0.31 -0.4
2,802,289 + OH686_13325 0.31 -0.9
2,802,289 + OH686_13325 0.31 -2.7
2,802,290 - OH686_13325 0.31 +0.8
2,802,290 - OH686_13325 0.31 +0.5
2,802,290 - OH686_13325 0.31 -1.7
2,802,290 - OH686_13325 0.31 -0.8
2,802,290 - OH686_13325 0.31 +3.1
2,802,290 - OH686_13325 0.31 -2.6
2,802,417 + OH686_13325 0.41 -1.2
2,802,417 + OH686_13325 0.41 -0.5
2,802,901 + OH686_13325 0.77 -0.5
2,802,901 + OH686_13325 0.77 -0.6
2,803,047 + OH686_13325 0.88 -0.0
2,803,047 + OH686_13325 0.88 -1.0
2,803,047 + OH686_13325 0.88 -1.5
2,803,047 + OH686_13325 0.88 -0.7
2,803,048 - OH686_13325 0.89 -0.1
2,803,048 - OH686_13325 0.89 -2.1
2,803,048 - OH686_13325 0.89 +0.9
2,803,048 - OH686_13325 0.89 +0.4
2,803,048 - OH686_13325 0.89 +0.2
2,803,048 - OH686_13325 0.89 -0.4
2,803,179 + -1.2
2,803,179 + -1.9
2,803,179 + -0.2
2,803,180 - -1.3
2,803,180 - -1.6
2,803,180 - -1.6
2,804,163 + OH686_13330 0.52 -0.6
2,804,163 + OH686_13330 0.52 -2.2
2,804,163 + OH686_13330 0.52 -0.2
2,804,164 - OH686_13330 0.52 -1.1
2,804,164 - OH686_13330 0.52 +1.0
2,804,164 - OH686_13330 0.52 +0.9

Or see this region's nucleotide sequence