Strain Fitness in Pseudomonas sp. S08-1 around OH686_08350

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_08345 and OH686_08350 overlap by 8 nucleotidesOH686_08350 and OH686_08355 overlap by 51 nucleotidesOH686_08355 and OH686_08360 are separated by 127 nucleotidesOH686_08360 and OH686_08365 overlap by 4 nucleotides OH686_08345: OH686_08345 - Penicillin-binding protein activator LpoA, at 1,702,080 to 1,703,891 _08345 OH686_08350: OH686_08350 - hypothetical protein' product='hypothetical protein, at 1,703,884 to 1,704,060 _08350 OH686_08355: OH686_08355 - UPF0102 protein YraN, at 1,704,010 to 1,704,243 _08355 OH686_08360: OH686_08360 - phosphoheptose isomerase, at 1,704,371 to 1,704,964 _08360 OH686_08365: OH686_08365 - Uncharacterized protein YraP, at 1,704,961 to 1,705,494 _08365 Position (kb) 1703 1704 1705Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1702.953 kb on + strand, within OH686_08345at 1702.953 kb on + strand, within OH686_08345at 1702.953 kb on + strand, within OH686_08345at 1702.953 kb on + strand, within OH686_08345at 1702.953 kb on + strand, within OH686_08345at 1702.953 kb on + strand, within OH686_08345at 1702.953 kb on + strand, within OH686_08345at 1702.953 kb on + strand, within OH686_08345at 1702.954 kb on - strand, within OH686_08345at 1702.954 kb on - strand, within OH686_08345at 1702.954 kb on - strand, within OH686_08345at 1702.954 kb on - strand, within OH686_08345at 1702.954 kb on - strand, within OH686_08345at 1702.954 kb on - strand, within OH686_08345at 1702.954 kb on - strand, within OH686_08345at 1702.954 kb on - strand, within OH686_08345at 1702.954 kb on - strand, within OH686_08345at 1702.954 kb on - strand, within OH686_08345at 1702.954 kb on - strand, within OH686_08345at 1702.954 kb on - strand, within OH686_08345at 1702.954 kb on - strand, within OH686_08345at 1702.954 kb on - strand, within OH686_08345at 1702.989 kb on + strand, within OH686_08345at 1702.989 kb on + strand, within OH686_08345at 1702.990 kb on - strand, within OH686_08345at 1703.077 kb on + strand, within OH686_08345at 1703.078 kb on - strand, within OH686_08345at 1703.103 kb on + strand, within OH686_08345at 1703.103 kb on + strand, within OH686_08345at 1703.103 kb on + strand, within OH686_08345at 1703.103 kb on + strand, within OH686_08345at 1703.103 kb on + strand, within OH686_08345at 1703.103 kb on + strand, within OH686_08345at 1703.104 kb on - strand, within OH686_08345at 1703.104 kb on - strand, within OH686_08345at 1703.104 kb on - strand, within OH686_08345at 1703.247 kb on - strand, within OH686_08345at 1703.254 kb on + strand, within OH686_08345at 1703.356 kb on + strand, within OH686_08345at 1703.356 kb on + strand, within OH686_08345at 1703.356 kb on + strand, within OH686_08345at 1703.356 kb on + strand, within OH686_08345at 1703.357 kb on - strand, within OH686_08345at 1703.357 kb on - strand, within OH686_08345at 1703.357 kb on - strand, within OH686_08345at 1703.357 kb on - strand, within OH686_08345at 1703.357 kb on - strand, within OH686_08345at 1703.357 kb on - strand, within OH686_08345at 1703.517 kb on + strand, within OH686_08345at 1703.517 kb on + strand, within OH686_08345at 1703.538 kb on + strand, within OH686_08345at 1703.538 kb on + strand, within OH686_08345at 1703.538 kb on + strand, within OH686_08345at 1703.538 kb on + strand, within OH686_08345at 1703.538 kb on + strand, within OH686_08345at 1703.538 kb on + strand, within OH686_08345at 1703.538 kb on + strand, within OH686_08345at 1703.538 kb on + strand, within OH686_08345at 1703.538 kb on + strand, within OH686_08345at 1703.538 kb on + strand, within OH686_08345at 1703.539 kb on - strand, within OH686_08345at 1703.539 kb on - strand, within OH686_08345at 1703.539 kb on - strand, within OH686_08345at 1703.539 kb on - strand, within OH686_08345at 1703.539 kb on - strand, within OH686_08345at 1703.539 kb on - strand, within OH686_08345at 1703.539 kb on - strand, within OH686_08345at 1703.539 kb on - strand, within OH686_08345at 1703.556 kb on + strand, within OH686_08345at 1703.556 kb on + strand, within OH686_08345at 1703.556 kb on + strand, within OH686_08345at 1703.556 kb on + strand, within OH686_08345at 1703.556 kb on + strand, within OH686_08345at 1703.556 kb on + strand, within OH686_08345at 1703.557 kb on - strand, within OH686_08345at 1703.557 kb on - strand, within OH686_08345at 1703.557 kb on - strand, within OH686_08345at 1703.557 kb on - strand, within OH686_08345at 1703.557 kb on - strand, within OH686_08345at 1703.557 kb on - strand, within OH686_08345at 1703.557 kb on - strand, within OH686_08345at 1703.583 kb on + strand, within OH686_08345at 1703.584 kb on - strand, within OH686_08345at 1703.703 kb on + strand, within OH686_08345at 1703.704 kb on - strand, within OH686_08345at 1703.889 kb on + strandat 1703.889 kb on + strandat 1703.890 kb on - strandat 1703.890 kb on - strandat 1704.024 kb on + strandat 1704.024 kb on + strandat 1704.024 kb on + strandat 1704.025 kb on - strandat 1704.029 kb on + strandat 1704.029 kb on + strandat 1704.029 kb on + strandat 1704.030 kb on - strandat 1704.030 kb on - strandat 1704.030 kb on - strandat 1704.030 kb on - strandat 1704.030 kb on - strandat 1704.030 kb on - strandat 1704.030 kb on - strandat 1704.030 kb on - strandat 1704.030 kb on - strandat 1704.030 kb on - strandat 1704.032 kb on + strandat 1704.033 kb on - strandat 1704.033 kb on - strandat 1704.033 kb on - strandat 1704.191 kb on + strand, within OH686_08355at 1704.221 kb on + strandat 1704.245 kb on + strandat 1704.245 kb on + strandat 1704.245 kb on + strandat 1704.245 kb on + strandat 1704.246 kb on - strandat 1704.246 kb on - strandat 1704.246 kb on - strandat 1704.246 kb on - strandat 1704.246 kb on - strandat 1704.292 kb on + strandat 1704.292 kb on + strandat 1704.357 kb on + strandat 1704.357 kb on + strandat 1704.357 kb on + strandat 1704.357 kb on + strandat 1704.357 kb on + strandat 1704.357 kb on + strandat 1704.357 kb on + strandat 1704.357 kb on + strandat 1704.357 kb on + strandat 1704.357 kb on + strandat 1704.357 kb on + strandat 1704.357 kb on + strandat 1704.357 kb on + strandat 1704.357 kb on + strandat 1704.357 kb on + strandat 1704.357 kb on + strandat 1704.357 kb on + strandat 1704.973 kb on - strandat 1705.005 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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1,702,953 + OH686_08345 0.48 +2.9
1,702,953 + OH686_08345 0.48 -3.0
1,702,953 + OH686_08345 0.48 +0.9
1,702,953 + OH686_08345 0.48 +1.4
1,702,953 + OH686_08345 0.48 +1.3
1,702,953 + OH686_08345 0.48 +0.1
1,702,953 + OH686_08345 0.48 +1.1
1,702,953 + OH686_08345 0.48 -1.1
1,702,954 - OH686_08345 0.48 +0.2
1,702,954 - OH686_08345 0.48 +1.1
1,702,954 - OH686_08345 0.48 +0.4
1,702,954 - OH686_08345 0.48 -0.5
1,702,954 - OH686_08345 0.48 +0.3
1,702,954 - OH686_08345 0.48 +1.6
1,702,954 - OH686_08345 0.48 +1.6
1,702,954 - OH686_08345 0.48 +1.0
1,702,954 - OH686_08345 0.48 +0.7
1,702,954 - OH686_08345 0.48 +0.9
1,702,954 - OH686_08345 0.48 -0.2
1,702,954 - OH686_08345 0.48 +1.1
1,702,954 - OH686_08345 0.48 +1.1
1,702,954 - OH686_08345 0.48 +2.6
1,702,989 + OH686_08345 0.50 +0.4
1,702,989 + OH686_08345 0.50 +1.8
1,702,990 - OH686_08345 0.50 +2.2
1,703,077 + OH686_08345 0.55 +1.0
1,703,078 - OH686_08345 0.55 +0.7
1,703,103 + OH686_08345 0.56 -2.3
1,703,103 + OH686_08345 0.56 +0.3
1,703,103 + OH686_08345 0.56 +1.3
1,703,103 + OH686_08345 0.56 +2.0
1,703,103 + OH686_08345 0.56 +0.3
1,703,103 + OH686_08345 0.56 -0.2
1,703,104 - OH686_08345 0.57 +1.4
1,703,104 - OH686_08345 0.57 +0.2
1,703,104 - OH686_08345 0.57 +1.7
1,703,247 - OH686_08345 0.64 +1.1
1,703,254 + OH686_08345 0.65 -0.6
1,703,356 + OH686_08345 0.70 -0.5
1,703,356 + OH686_08345 0.70 +0.8
1,703,356 + OH686_08345 0.70 +1.0
1,703,356 + OH686_08345 0.70 +0.2
1,703,357 - OH686_08345 0.70 +1.5
1,703,357 - OH686_08345 0.70 +0.9
1,703,357 - OH686_08345 0.70 +2.3
1,703,357 - OH686_08345 0.70 +1.5
1,703,357 - OH686_08345 0.70 +0.3
1,703,357 - OH686_08345 0.70 +1.6
1,703,517 + OH686_08345 0.79 +0.4
1,703,517 + OH686_08345 0.79 -2.0
1,703,538 + OH686_08345 0.80 +1.3
1,703,538 + OH686_08345 0.80 -1.6
1,703,538 + OH686_08345 0.80 +0.8
1,703,538 + OH686_08345 0.80 -0.6
1,703,538 + OH686_08345 0.80 +0.3
1,703,538 + OH686_08345 0.80 -0.2
1,703,538 + OH686_08345 0.80 -1.4
1,703,538 + OH686_08345 0.80 +1.3
1,703,538 + OH686_08345 0.80 +0.7
1,703,538 + OH686_08345 0.80 +1.5
1,703,539 - OH686_08345 0.81 +0.9
1,703,539 - OH686_08345 0.81 +3.3
1,703,539 - OH686_08345 0.81 +0.8
1,703,539 - OH686_08345 0.81 +2.7
1,703,539 - OH686_08345 0.81 -0.3
1,703,539 - OH686_08345 0.81 +1.3
1,703,539 - OH686_08345 0.81 +2.4
1,703,539 - OH686_08345 0.81 +0.2
1,703,556 + OH686_08345 0.81 +2.3
1,703,556 + OH686_08345 0.81 +1.0
1,703,556 + OH686_08345 0.81 +0.8
1,703,556 + OH686_08345 0.81 +1.8
1,703,556 + OH686_08345 0.81 -0.0
1,703,556 + OH686_08345 0.81 +3.6
1,703,557 - OH686_08345 0.82 +1.8
1,703,557 - OH686_08345 0.82 +0.9
1,703,557 - OH686_08345 0.82 +0.4
1,703,557 - OH686_08345 0.82 +1.8
1,703,557 - OH686_08345 0.82 +1.3
1,703,557 - OH686_08345 0.82 -1.8
1,703,557 - OH686_08345 0.82 +1.7
1,703,583 + OH686_08345 0.83 +1.0
1,703,584 - OH686_08345 0.83 +1.5
1,703,703 + OH686_08345 0.90 +2.0
1,703,704 - OH686_08345 0.90 +1.6
1,703,889 + -0.6
1,703,889 + -0.2
1,703,890 - -1.0
1,703,890 - +0.3
1,704,024 + +0.9
1,704,024 + +0.0
1,704,024 + +0.1
1,704,025 - +1.1
1,704,029 + +1.7
1,704,029 + +0.9
1,704,029 + -1.1
1,704,030 - +0.4
1,704,030 - +3.7
1,704,030 - +1.3
1,704,030 - -1.1
1,704,030 - -0.2
1,704,030 - +0.8
1,704,030 - +0.1
1,704,030 - -0.1
1,704,030 - +0.1
1,704,030 - -0.3
1,704,032 + +1.6
1,704,033 - -1.2
1,704,033 - -1.1
1,704,033 - +1.5
1,704,191 + OH686_08355 0.77 +0.5
1,704,221 + -1.4
1,704,245 + -0.2
1,704,245 + -0.3
1,704,245 + +2.5
1,704,245 + -1.7
1,704,246 - -1.2
1,704,246 - -1.4
1,704,246 - -1.7
1,704,246 - -0.2
1,704,246 - -0.0
1,704,292 + -0.5
1,704,292 + -2.0
1,704,357 + +0.5
1,704,357 + -0.9
1,704,357 + -0.2
1,704,357 + -2.2
1,704,357 + +2.8
1,704,357 + +0.8
1,704,357 + +1.9
1,704,357 + +1.2
1,704,357 + +0.8
1,704,357 + -0.1
1,704,357 + +0.4
1,704,357 + +0.1
1,704,357 + +0.4
1,704,357 + -0.7
1,704,357 + +0.7
1,704,357 + -0.3
1,704,357 + +0.4
1,704,973 - -1.4
1,705,005 - -0.9

Or see this region's nucleotide sequence