Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OH686_04585 and OH686_04590 are separated by 67 nucleotides OH686_04590 and OH686_04595 are separated by 377 nucleotides OH686_04595 and OH686_04600 are separated by 68 nucleotides OH686_04600 and OH686_04605 are separated by 322 nucleotides
OH686_04585: OH686_04585 - Biosynthetic Aromatic amino acid aminotransferase alpha or Aromatic-amino-acid aminotransferase , at 953,199 to 954,395
_04585
OH686_04590: OH686_04590 - tRNA-Asn, at 954,463 to 954,538
_04590
OH686_04595: OH686_04595 - hypothetical protein, at 954,916 to 955,275
_04595
OH686_04600: OH686_04600 - hypothetical protein, at 955,344 to 955,661
_04600
OH686_04605: OH686_04605 - Branched-chain amino acid ABC transporter, substrate-binding protein LivJ, at 955,984 to 957,105
_04605
Position (kb) 954
955
956 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 953.955 kb on + strand, within OH686_04585 at 954.051 kb on + strand, within OH686_04585 at 954.051 kb on + strand, within OH686_04585 at 954.052 kb on - strand, within OH686_04585 at 954.052 kb on - strand, within OH686_04585 at 954.052 kb on - strand, within OH686_04585 at 954.052 kb on - strand, within OH686_04585 at 954.052 kb on - strand, within OH686_04585 at 954.252 kb on + strand, within OH686_04585 at 954.253 kb on - strand, within OH686_04585 at 954.306 kb on + strand at 954.306 kb on + strand at 954.306 kb on + strand at 954.306 kb on + strand at 954.306 kb on + strand at 954.306 kb on + strand at 954.306 kb on + strand at 954.306 kb on + strand at 954.306 kb on + strand at 954.306 kb on + strand at 954.307 kb on - strand at 954.307 kb on - strand at 954.307 kb on - strand at 954.307 kb on - strand at 954.307 kb on - strand at 954.307 kb on - strand at 954.388 kb on + strand at 954.389 kb on - strand at 954.471 kb on - strand, within OH686_04590 at 954.552 kb on + strand at 954.552 kb on + strand at 954.552 kb on + strand at 954.553 kb on - strand at 954.553 kb on - strand at 954.553 kb on - strand at 954.576 kb on + strand at 954.576 kb on + strand at 954.576 kb on + strand at 954.617 kb on - strand at 954.733 kb on - strand at 954.739 kb on + strand at 954.739 kb on + strand at 954.739 kb on + strand at 954.857 kb on + strand at 954.858 kb on - strand at 954.859 kb on + strand at 954.859 kb on + strand at 954.859 kb on + strand at 954.859 kb on + strand at 954.860 kb on - strand at 954.860 kb on - strand at 954.860 kb on - strand at 954.860 kb on - strand at 955.205 kb on + strand, within OH686_04595 at 955.205 kb on + strand, within OH686_04595 at 955.206 kb on - strand, within OH686_04595 at 955.206 kb on - strand, within OH686_04595 at 955.208 kb on + strand, within OH686_04595 at 955.208 kb on + strand, within OH686_04595 at 955.208 kb on + strand, within OH686_04595 at 955.209 kb on - strand, within OH686_04595 at 955.251 kb on + strand at 955.251 kb on + strand at 955.251 kb on + strand at 955.251 kb on + strand at 955.252 kb on - strand at 955.252 kb on - strand at 955.252 kb on - strand at 955.252 kb on - strand at 955.252 kb on - strand at 955.252 kb on - strand at 955.252 kb on - strand at 955.252 kb on - strand at 955.255 kb on + strand at 955.255 kb on + strand at 955.255 kb on + strand at 955.255 kb on + strand at 955.255 kb on + strand at 955.255 kb on + strand at 955.255 kb on + strand at 955.255 kb on + strand at 955.255 kb on + strand at 955.255 kb on + strand at 955.255 kb on + strand at 955.255 kb on + strand at 955.255 kb on + strand at 955.255 kb on + strand at 955.255 kb on + strand at 955.255 kb on + strand at 955.255 kb on + strand at 955.255 kb on + strand at 955.255 kb on + strand at 955.255 kb on + strand at 955.255 kb on + strand at 955.256 kb on - strand at 955.256 kb on - strand at 955.256 kb on - strand at 955.256 kb on - strand at 955.256 kb on - strand at 955.256 kb on - strand at 955.256 kb on - strand at 955.256 kb on - strand at 955.256 kb on - strand at 955.256 kb on - strand at 955.256 kb on - strand at 955.256 kb on - strand at 955.256 kb on - strand at 955.256 kb on - strand at 955.256 kb on - strand at 955.256 kb on - strand at 955.256 kb on - strand at 955.256 kb on - strand at 955.256 kb on - strand at 955.311 kb on + strand at 955.384 kb on - strand, within OH686_04600 at 955.398 kb on + strand, within OH686_04600 at 955.398 kb on + strand, within OH686_04600 at 955.398 kb on + strand, within OH686_04600 at 955.399 kb on - strand, within OH686_04600 at 955.399 kb on - strand, within OH686_04600 at 955.399 kb on - strand, within OH686_04600 at 955.399 kb on - strand, within OH686_04600 at 955.399 kb on - strand, within OH686_04600 at 955.399 kb on - strand, within OH686_04600 at 955.432 kb on + strand, within OH686_04600 at 955.432 kb on + strand, within OH686_04600 at 955.432 kb on + strand, within OH686_04600 at 955.432 kb on + strand, within OH686_04600 at 955.432 kb on + strand, within OH686_04600 at 955.433 kb on - strand, within OH686_04600 at 955.433 kb on - strand, within OH686_04600 at 955.433 kb on - strand, within OH686_04600 at 955.550 kb on + strand, within OH686_04600 at 955.637 kb on - strand at 955.637 kb on - strand at 955.646 kb on + strand at 955.646 kb on + strand at 955.647 kb on - strand at 955.647 kb on - strand at 955.647 kb on - strand at 955.676 kb on - strand at 955.676 kb on - strand at 955.709 kb on + strand at 955.804 kb on + strand at 955.805 kb on - strand at 955.874 kb on - strand at 955.914 kb on - strand at 955.951 kb on - strand at 955.961 kb on + strand at 955.969 kb on + strand at 955.969 kb on + strand at 955.969 kb on + strand at 955.969 kb on + strand at 955.969 kb on + strand at 955.969 kb on + strand at 955.969 kb on + strand at 955.969 kb on + strand at 955.969 kb on + strand at 955.969 kb on + strand at 955.969 kb on + strand at 955.969 kb on + strand at 955.969 kb on + strand at 955.970 kb on - strand at 955.970 kb on - strand at 955.970 kb on - strand at 955.970 kb on - strand at 955.970 kb on - strand at 955.970 kb on - strand at 955.970 kb on - strand at 955.970 kb on - strand at 955.970 kb on - strand at 955.970 kb on - strand at 955.970 kb on - strand at 955.970 kb on - strand at 955.970 kb on - strand at 955.970 kb on - strand at 955.970 kb on - strand at 955.970 kb on - strand at 955.970 kb on - strand at 955.983 kb on + strand at 955.984 kb on - strand at 956.007 kb on + strand at 956.007 kb on + strand at 956.007 kb on + strand at 956.007 kb on + strand at 956.008 kb on - strand at 956.050 kb on + strand at 956.050 kb on + strand at 956.116 kb on + strand, within OH686_04605 at 956.209 kb on + strand, within OH686_04605 at 956.210 kb on - strand, within OH686_04605 at 956.273 kb on + strand, within OH686_04605 at 956.273 kb on + strand, within OH686_04605 at 956.273 kb on + strand, within OH686_04605 at 956.273 kb on + strand, within OH686_04605 at 956.273 kb on + strand, within OH686_04605 at 956.273 kb on + strand, within OH686_04605 at 956.273 kb on + strand, within OH686_04605 at 956.274 kb on - strand, within OH686_04605 at 956.274 kb on - strand, within OH686_04605 at 956.274 kb on - strand, within OH686_04605 at 956.274 kb on - strand, within OH686_04605
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 953,955 + OH686_04585 0.63 -4.0 954,051 + OH686_04585 0.71 -2.0 954,051 + OH686_04585 0.71 -3.6 954,052 - OH686_04585 0.71 -1.8 954,052 - OH686_04585 0.71 -3.3 954,052 - OH686_04585 0.71 -2.8 954,052 - OH686_04585 0.71 -2.8 954,052 - OH686_04585 0.71 -2.7 954,252 + OH686_04585 0.88 -0.5 954,253 - OH686_04585 0.88 -0.1 954,306 + -2.3 954,306 + -3.8 954,306 + -3.1 954,306 + -2.7 954,306 + -1.2 954,306 + -2.0 954,306 + -1.7 954,306 + -0.3 954,306 + -0.2 954,306 + -3.8 954,307 - +0.1 954,307 - -3.9 954,307 - -3.7 954,307 - -0.9 954,307 - -2.9 954,307 - -3.6 954,388 + -0.3 954,389 - -0.2 954,471 - OH686_04590 0.11 -0.2 954,552 + -0.0 954,552 + +0.3 954,552 + +0.3 954,553 - +0.0 954,553 - -0.8 954,553 - +0.1 954,576 + +1.5 954,576 + -0.2 954,576 + +2.3 954,617 - +0.4 954,733 - -0.5 954,739 + +1.0 954,739 + -0.0 954,739 + -1.2 954,857 + +0.5 954,858 - -2.4 954,859 + -0.8 954,859 + -2.5 954,859 + -0.8 954,859 + -0.1 954,860 - +1.1 954,860 - -0.7 954,860 - -0.2 954,860 - -0.5 955,205 + OH686_04595 0.80 +1.0 955,205 + OH686_04595 0.80 +1.3 955,206 - OH686_04595 0.81 +0.5 955,206 - OH686_04595 0.81 +1.2 955,208 + OH686_04595 0.81 +1.2 955,208 + OH686_04595 0.81 +1.1 955,208 + OH686_04595 0.81 +0.7 955,209 - OH686_04595 0.81 -1.2 955,251 + -1.4 955,251 + -0.7 955,251 + +1.2 955,251 + +0.5 955,252 - +2.1 955,252 - +1.6 955,252 - +1.1 955,252 - -0.1 955,252 - +1.6 955,252 - -1.1 955,252 - -0.3 955,252 - +2.1 955,255 + +0.9 955,255 + -1.9 955,255 + -1.4 955,255 + +0.1 955,255 + +1.8 955,255 + +0.5 955,255 + +0.4 955,255 + +0.9 955,255 + +0.5 955,255 + +0.8 955,255 + -3.1 955,255 + +0.1 955,255 + +1.4 955,255 + -1.4 955,255 + +1.0 955,255 + -1.1 955,255 + +0.6 955,255 + +1.4 955,255 + +0.6 955,255 + +1.3 955,255 + +0.8 955,256 - +0.9 955,256 - +1.2 955,256 - +2.0 955,256 - +0.5 955,256 - +2.4 955,256 - -0.6 955,256 - +1.3 955,256 - -2.2 955,256 - -0.2 955,256 - +1.2 955,256 - +1.2 955,256 - +1.1 955,256 - +1.7 955,256 - -2.3 955,256 - +1.8 955,256 - +0.1 955,256 - +1.4 955,256 - +1.5 955,256 - +1.3 955,311 + -0.4 955,384 - OH686_04600 0.13 +0.7 955,398 + OH686_04600 0.17 +0.7 955,398 + OH686_04600 0.17 +0.5 955,398 + OH686_04600 0.17 -2.1 955,399 - OH686_04600 0.17 -0.9 955,399 - OH686_04600 0.17 +0.6 955,399 - OH686_04600 0.17 -0.3 955,399 - OH686_04600 0.17 -1.5 955,399 - OH686_04600 0.17 +2.0 955,399 - OH686_04600 0.17 -1.3 955,432 + OH686_04600 0.28 -1.5 955,432 + OH686_04600 0.28 -0.5 955,432 + OH686_04600 0.28 -0.6 955,432 + OH686_04600 0.28 -0.0 955,432 + OH686_04600 0.28 -1.0 955,433 - OH686_04600 0.28 +0.5 955,433 - OH686_04600 0.28 +0.4 955,433 - OH686_04600 0.28 -0.8 955,550 + OH686_04600 0.65 -1.5 955,637 - +0.8 955,637 - -1.4 955,646 + -1.0 955,646 + +0.6 955,647 - +1.2 955,647 - -0.2 955,647 - -2.3 955,676 - -1.3 955,676 - -0.4 955,709 + -3.0 955,804 + -0.2 955,805 - -0.1 955,874 - +1.0 955,914 - -0.4 955,951 - -2.9 955,961 + -1.4 955,969 + -0.9 955,969 + -0.5 955,969 + -1.5 955,969 + -3.0 955,969 + -0.6 955,969 + -0.1 955,969 + -0.1 955,969 + +0.9 955,969 + -0.7 955,969 + -0.7 955,969 + +1.0 955,969 + -0.6 955,969 + +0.0 955,970 - +0.1 955,970 - -1.5 955,970 - -2.3 955,970 - -1.3 955,970 - -2.0 955,970 - -0.4 955,970 - -0.0 955,970 - -1.1 955,970 - -0.5 955,970 - -2.0 955,970 - -1.5 955,970 - -0.3 955,970 - -0.5 955,970 - +0.5 955,970 - -0.4 955,970 - -3.5 955,970 - -0.7 955,983 + +1.0 955,984 - -0.8 956,007 + -1.3 956,007 + +0.1 956,007 + -0.4 956,007 + -2.3 956,008 - -0.6 956,050 + -1.0 956,050 + +0.9 956,116 + OH686_04605 0.12 -0.5 956,209 + OH686_04605 0.20 -1.4 956,210 - OH686_04605 0.20 -1.7 956,273 + OH686_04605 0.26 -0.8 956,273 + OH686_04605 0.26 -1.1 956,273 + OH686_04605 0.26 +0.4 956,273 + OH686_04605 0.26 -0.2 956,273 + OH686_04605 0.26 -2.0 956,273 + OH686_04605 0.26 -2.3 956,273 + OH686_04605 0.26 -2.0 956,274 - OH686_04605 0.26 -0.5 956,274 - OH686_04605 0.26 -1.0 956,274 - OH686_04605 0.26 +1.0 956,274 - OH686_04605 0.26 -3.2
Or see this region's nucleotide sequence