Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00165 and PS417_00170 are separated by 183 nucleotides PS417_00170 and PS417_00175 are separated by 65 nucleotides PS417_00175 and PS417_00180 are separated by 136 nucleotides
PS417_00165: PS417_00165 - galactonate dehydratase, at 34,607 to 35,755
_00165
PS417_00170: PS417_00170 - glucarate transporter, at 35,939 to 37,246
_00170
PS417_00175: PS417_00175 - CigR, at 37,312 to 37,752
_00175
PS417_00180: PS417_00180 - tryptophan synthase subunit alpha, at 37,889 to 38,698
_00180
Position (kb) 35
36
37
38 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 34.955 kb on + strand, within PS417_00165 at 35.213 kb on + strand, within PS417_00165 at 35.213 kb on + strand, within PS417_00165 at 35.213 kb on + strand, within PS417_00165 at 35.214 kb on - strand, within PS417_00165 at 35.214 kb on - strand, within PS417_00165 at 35.357 kb on + strand, within PS417_00165 at 35.438 kb on + strand, within PS417_00165 at 35.516 kb on + strand, within PS417_00165 at 35.517 kb on - strand, within PS417_00165 at 35.517 kb on - strand, within PS417_00165 at 35.517 kb on - strand, within PS417_00165 at 35.582 kb on + strand, within PS417_00165 at 35.582 kb on + strand, within PS417_00165 at 35.609 kb on + strand, within PS417_00165 at 35.609 kb on + strand, within PS417_00165 at 35.672 kb on + strand at 35.673 kb on - strand at 35.673 kb on - strand at 35.673 kb on - strand at 35.916 kb on + strand at 35.922 kb on + strand at 35.973 kb on + strand at 35.983 kb on + strand at 36.144 kb on - strand, within PS417_00170 at 36.201 kb on + strand, within PS417_00170 at 36.201 kb on + strand, within PS417_00170 at 36.202 kb on - strand, within PS417_00170 at 36.202 kb on - strand, within PS417_00170 at 36.202 kb on - strand, within PS417_00170 at 36.202 kb on - strand, within PS417_00170 at 36.203 kb on + strand, within PS417_00170 at 36.204 kb on - strand, within PS417_00170 at 36.204 kb on - strand, within PS417_00170 at 36.204 kb on - strand, within PS417_00170 at 36.386 kb on + strand, within PS417_00170 at 36.386 kb on + strand, within PS417_00170 at 36.387 kb on - strand, within PS417_00170 at 36.683 kb on + strand, within PS417_00170 at 36.683 kb on + strand, within PS417_00170 at 36.684 kb on - strand, within PS417_00170 at 36.684 kb on - strand, within PS417_00170 at 36.756 kb on - strand, within PS417_00170 at 36.944 kb on + strand, within PS417_00170 at 36.944 kb on + strand, within PS417_00170 at 36.944 kb on + strand, within PS417_00170 at 36.944 kb on + strand, within PS417_00170 at 36.944 kb on + strand, within PS417_00170 at 36.944 kb on + strand, within PS417_00170 at 36.944 kb on + strand, within PS417_00170 at 36.944 kb on + strand, within PS417_00170 at 36.945 kb on - strand, within PS417_00170 at 36.945 kb on - strand, within PS417_00170 at 36.966 kb on + strand, within PS417_00170 at 36.966 kb on + strand, within PS417_00170 at 37.163 kb on - strand at 37.163 kb on - strand at 37.166 kb on + strand at 37.166 kb on + strand at 37.166 kb on + strand at 37.167 kb on - strand at 37.167 kb on - strand at 37.203 kb on - strand at 37.203 kb on - strand at 37.203 kb on - strand at 37.203 kb on - strand at 37.203 kb on - strand at 37.206 kb on + strand at 37.206 kb on + strand at 37.206 kb on + strand at 37.206 kb on + strand at 37.207 kb on - strand at 37.207 kb on - strand at 37.207 kb on - strand at 37.244 kb on + strand at 37.298 kb on - strand at 37.298 kb on - strand at 37.340 kb on + strand at 37.340 kb on + strand at 37.341 kb on - strand at 37.454 kb on + strand, within PS417_00175 at 37.826 kb on - strand at 37.826 kb on - strand at 37.894 kb on + strand at 37.894 kb on + strand at 37.894 kb on + strand at 37.895 kb on - strand at 38.175 kb on + strand, within PS417_00180
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 34,955 + PS417_00165 0.30 -3.7 35,213 + PS417_00165 0.53 -2.1 35,213 + PS417_00165 0.53 -1.8 35,213 + PS417_00165 0.53 -0.3 35,214 - PS417_00165 0.53 -3.2 35,214 - PS417_00165 0.53 -0.4 35,357 + PS417_00165 0.65 -3.2 35,438 + PS417_00165 0.72 -3.5 35,516 + PS417_00165 0.79 -1.7 35,517 - PS417_00165 0.79 -1.1 35,517 - PS417_00165 0.79 -3.0 35,517 - PS417_00165 0.79 -2.9 35,582 + PS417_00165 0.85 -4.3 35,582 + PS417_00165 0.85 -3.0 35,609 + PS417_00165 0.87 -4.3 35,609 + PS417_00165 0.87 -3.7 35,672 + -3.8 35,673 - +0.2 35,673 - -3.6 35,673 - -4.2 35,916 + +0.1 35,922 + +0.2 35,973 + -0.5 35,983 + -1.1 36,144 - PS417_00170 0.16 -0.7 36,201 + PS417_00170 0.20 -0.5 36,201 + PS417_00170 0.20 -0.9 36,202 - PS417_00170 0.20 -0.4 36,202 - PS417_00170 0.20 -0.7 36,202 - PS417_00170 0.20 -0.8 36,202 - PS417_00170 0.20 -1.3 36,203 + PS417_00170 0.20 -0.4 36,204 - PS417_00170 0.20 -1.1 36,204 - PS417_00170 0.20 -0.3 36,204 - PS417_00170 0.20 -1.0 36,386 + PS417_00170 0.34 -2.1 36,386 + PS417_00170 0.34 -0.9 36,387 - PS417_00170 0.34 +0.2 36,683 + PS417_00170 0.57 +0.3 36,683 + PS417_00170 0.57 -1.3 36,684 - PS417_00170 0.57 -1.6 36,684 - PS417_00170 0.57 -0.8 36,756 - PS417_00170 0.62 -0.8 36,944 + PS417_00170 0.77 -0.9 36,944 + PS417_00170 0.77 -0.2 36,944 + PS417_00170 0.77 -0.6 36,944 + PS417_00170 0.77 -0.5 36,944 + PS417_00170 0.77 -1.4 36,944 + PS417_00170 0.77 -0.4 36,944 + PS417_00170 0.77 +1.2 36,944 + PS417_00170 0.77 -1.1 36,945 - PS417_00170 0.77 -1.0 36,945 - PS417_00170 0.77 -1.0 36,966 + PS417_00170 0.79 -0.7 36,966 + PS417_00170 0.79 -1.1 37,163 - +0.5 37,163 - -1.1 37,166 + -1.2 37,166 + -0.7 37,166 + -2.6 37,167 - -0.5 37,167 - -0.1 37,203 - -1.5 37,203 - -1.4 37,203 - -0.9 37,203 - -0.6 37,203 - -0.9 37,206 + -0.3 37,206 + -0.3 37,206 + -0.7 37,206 + -1.2 37,207 - -1.0 37,207 - -1.6 37,207 - -0.6 37,244 + -0.2 37,298 - +1.2 37,298 - -0.3 37,340 + +0.9 37,340 + -1.1 37,341 - +0.1 37,454 + PS417_00175 0.32 +0.2 37,826 - -0.2 37,826 - -0.0 37,894 + -0.0 37,894 + -0.3 37,894 + +1.2 37,895 - -0.4 38,175 + PS417_00180 0.35 -2.8
Or see this region's nucleotide sequence