Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0064

Experiment: m.b. Paraquat dichloride 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0063 and Echvi_0064 are separated by 609 nucleotidesEchvi_0064 and Echvi_0065 are separated by 95 nucleotides Echvi_0063: Echvi_0063 - UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase, at 62,049 to 63,203 _0063 Echvi_0064: Echvi_0064 - 5S, at 63,813 to 63,924 _0064 Echvi_0065: Echvi_0065 - 23S, at 64,020 to 66,913 _0065 Position (kb) 63 64Strain fitness (log2 ratio) -1 0 1at 62.818 kb on + strand, within Echvi_0063at 62.830 kb on - strand, within Echvi_0063at 62.886 kb on + strand, within Echvi_0063at 62.887 kb on - strand, within Echvi_0063at 62.887 kb on - strand, within Echvi_0063at 62.951 kb on + strand, within Echvi_0063at 62.960 kb on + strand, within Echvi_0063at 62.960 kb on + strand, within Echvi_0063at 62.961 kb on - strand, within Echvi_0063at 62.961 kb on - strand, within Echvi_0063at 63.004 kb on + strand, within Echvi_0063at 63.005 kb on - strand, within Echvi_0063at 63.030 kb on + strand, within Echvi_0063at 63.062 kb on + strand, within Echvi_0063at 63.076 kb on + strand, within Echvi_0063at 63.111 kb on + strandat 63.150 kb on + strandat 63.153 kb on + strandat 63.154 kb on - strandat 63.154 kb on - strandat 63.155 kb on + strandat 63.155 kb on + strandat 63.156 kb on - strandat 63.156 kb on - strandat 63.156 kb on - strandat 63.156 kb on - strandat 63.189 kb on + strandat 63.189 kb on + strandat 63.195 kb on + strandat 63.198 kb on + strandat 63.198 kb on + strandat 63.198 kb on + strandat 63.198 kb on + strandat 63.198 kb on + strandat 63.198 kb on + strandat 63.199 kb on - strandat 63.220 kb on + strandat 63.227 kb on + strandat 63.466 kb on - strandat 63.517 kb on - strandat 63.517 kb on - strandat 63.579 kb on + strandat 63.580 kb on - strandat 63.737 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.05 mg/ml
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62,818 + Echvi_0063 0.67 -0.1
62,830 - Echvi_0063 0.68 +0.6
62,886 + Echvi_0063 0.72 -1.2
62,887 - Echvi_0063 0.73 -0.5
62,887 - Echvi_0063 0.73 +0.0
62,951 + Echvi_0063 0.78 +1.4
62,960 + Echvi_0063 0.79 -0.3
62,960 + Echvi_0063 0.79 +0.1
62,961 - Echvi_0063 0.79 +0.6
62,961 - Echvi_0063 0.79 -0.7
63,004 + Echvi_0063 0.83 +0.7
63,005 - Echvi_0063 0.83 -0.1
63,030 + Echvi_0063 0.85 +0.8
63,062 + Echvi_0063 0.88 -0.1
63,076 + Echvi_0063 0.89 -0.3
63,111 + +0.2
63,150 + +0.1
63,153 + -0.2
63,154 - +1.1
63,154 - -0.4
63,155 + -0.0
63,155 + -0.9
63,156 - +0.4
63,156 - +0.4
63,156 - +0.1
63,156 - +1.1
63,189 + +0.7
63,189 + +0.5
63,195 + +1.1
63,198 + -0.5
63,198 + +0.2
63,198 + -0.1
63,198 + -1.1
63,198 + -0.0
63,198 + -0.4
63,199 - -0.8
63,220 + -0.2
63,227 + +1.1
63,466 - +0.7
63,517 - -0.3
63,517 - -0.3
63,579 + -0.7
63,580 - +0.4
63,737 - -0.1

Or see this region's nucleotide sequence