Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS16915 and ABIE41_RS16920 are separated by 114 nucleotides ABIE41_RS16920 and ABIE41_RS16925 are separated by 3 nucleotides ABIE41_RS16925 and ABIE41_RS16930 are separated by 161 nucleotides
ABIE41_RS16915: ABIE41_RS16915 - LysR family transcriptional regulator, at 3,486,080 to 3,487,000
_RS16915
ABIE41_RS16920: ABIE41_RS16920 - hypothetical protein, at 3,487,115 to 3,487,372
_RS16920
ABIE41_RS16925: ABIE41_RS16925 - alpha/beta hydrolase, at 3,487,376 to 3,488,071
_RS16925
ABIE41_RS16930: ABIE41_RS16930 - DEAD/DEAH box helicase, at 3,488,233 to 3,489,819
_RS16930
Position (kb)
3487
3488 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3486.147 kb on - strand at 3486.588 kb on - strand, within ABIE41_RS16915 at 3486.623 kb on + strand, within ABIE41_RS16915 at 3486.623 kb on + strand, within ABIE41_RS16915 at 3486.623 kb on + strand, within ABIE41_RS16915 at 3486.624 kb on - strand, within ABIE41_RS16915 at 3486.624 kb on - strand, within ABIE41_RS16915 at 3486.624 kb on - strand, within ABIE41_RS16915 at 3486.624 kb on - strand, within ABIE41_RS16915 at 3486.928 kb on - strand at 3487.872 kb on + strand, within ABIE41_RS16925 at 3488.020 kb on - strand at 3488.074 kb on + strand at 3488.075 kb on - strand at 3488.095 kb on + strand at 3488.096 kb on - strand at 3488.293 kb on + strand at 3488.293 kb on + strand at 3488.293 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 3,486,147 - -0.3 3,486,588 - ABIE41_RS16915 0.55 +1.8 3,486,623 + ABIE41_RS16915 0.59 -0.1 3,486,623 + ABIE41_RS16915 0.59 -0.3 3,486,623 + ABIE41_RS16915 0.59 +0.1 3,486,624 - ABIE41_RS16915 0.59 -0.3 3,486,624 - ABIE41_RS16915 0.59 -0.4 3,486,624 - ABIE41_RS16915 0.59 -0.1 3,486,624 - ABIE41_RS16915 0.59 +0.3 3,486,928 - +0.1 3,487,872 + ABIE41_RS16925 0.71 +0.8 3,488,020 - -0.0 3,488,074 + +0.1 3,488,075 - -0.0 3,488,095 + +1.2 3,488,096 - -2.1 3,488,293 + +0.1 3,488,293 + +2.1 3,488,293 + -1.7
Or see this region's nucleotide sequence