Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS08780 and ABIE41_RS08785 are separated by 125 nucleotides ABIE41_RS08785 and ABIE41_RS08790 are separated by 345 nucleotides ABIE41_RS08790 and ABIE41_RS08795 overlap by 47 nucleotides
ABIE41_RS08780: ABIE41_RS08780 - phosphoserine transaminase, at 1,820,051 to 1,821,229
_RS08780
ABIE41_RS08785: ABIE41_RS08785 - Swt1 family HEPN domain-containing protein, at 1,821,355 to 1,821,909
_RS08785
ABIE41_RS08790: ABIE41_RS08790 - hypothetical protein, at 1,822,255 to 1,822,425
_RS08790
ABIE41_RS08795: ABIE41_RS08795 - DUF5343 domain-containing protein, at 1,822,379 to 1,822,576
_RS08795
Position (kb)
1821
1822 Strain fitness (log2 ratio)
-2
-1
0
1 at 1820.859 kb on + strand, within ABIE41_RS08780 at 1821.293 kb on - strand at 1821.638 kb on - strand, within ABIE41_RS08785 at 1821.838 kb on + strand, within ABIE41_RS08785 at 1821.839 kb on - strand, within ABIE41_RS08785 at 1821.956 kb on - strand at 1821.983 kb on - strand at 1822.027 kb on + strand at 1822.040 kb on - strand at 1822.561 kb on - strand at 1822.561 kb on - strand at 1822.590 kb on + strand at 1822.648 kb on + strand at 1822.695 kb on + strand at 1822.695 kb on + strand at 1822.696 kb on - strand at 1822.704 kb on + strand at 1822.704 kb on + strand at 1822.705 kb on - strand at 1822.705 kb on - strand at 1822.769 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 1,820,859 + ABIE41_RS08780 0.69 +1.0 1,821,293 - +0.7 1,821,638 - ABIE41_RS08785 0.51 -0.6 1,821,838 + ABIE41_RS08785 0.87 +0.1 1,821,839 - ABIE41_RS08785 0.87 +0.6 1,821,956 - -0.2 1,821,983 - +0.3 1,822,027 + +0.3 1,822,040 - +0.0 1,822,561 - +0.0 1,822,561 - +0.4 1,822,590 + -1.1 1,822,648 + +0.1 1,822,695 + +0.7 1,822,695 + -2.2 1,822,696 - -1.2 1,822,704 + +0.0 1,822,704 + -1.1 1,822,705 - -2.2 1,822,705 - +1.1 1,822,769 - -1.9
Or see this region's nucleotide sequence