Strain Fitness in Bosea sp. OAE506 around ABIE41_RS08785

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS08780 and ABIE41_RS08785 are separated by 125 nucleotidesABIE41_RS08785 and ABIE41_RS08790 are separated by 345 nucleotidesABIE41_RS08790 and ABIE41_RS08795 overlap by 47 nucleotides ABIE41_RS08780: ABIE41_RS08780 - phosphoserine transaminase, at 1,820,051 to 1,821,229 _RS08780 ABIE41_RS08785: ABIE41_RS08785 - Swt1 family HEPN domain-containing protein, at 1,821,355 to 1,821,909 _RS08785 ABIE41_RS08790: ABIE41_RS08790 - hypothetical protein, at 1,822,255 to 1,822,425 _RS08790 ABIE41_RS08795: ABIE41_RS08795 - DUF5343 domain-containing protein, at 1,822,379 to 1,822,576 _RS08795 Position (kb) 1821 1822Strain fitness (log2 ratio) -2 -1 0 1at 1820.859 kb on + strand, within ABIE41_RS08780at 1821.293 kb on - strandat 1821.638 kb on - strand, within ABIE41_RS08785at 1821.838 kb on + strand, within ABIE41_RS08785at 1821.839 kb on - strand, within ABIE41_RS08785at 1821.956 kb on - strandat 1821.983 kb on - strandat 1822.027 kb on + strandat 1822.040 kb on - strandat 1822.561 kb on - strandat 1822.561 kb on - strandat 1822.590 kb on + strandat 1822.648 kb on + strandat 1822.695 kb on + strandat 1822.695 kb on + strandat 1822.696 kb on - strandat 1822.704 kb on + strandat 1822.704 kb on + strandat 1822.705 kb on - strandat 1822.705 kb on - strandat 1822.769 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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1,820,859 + ABIE41_RS08780 0.69 +1.0
1,821,293 - +0.7
1,821,638 - ABIE41_RS08785 0.51 -0.6
1,821,838 + ABIE41_RS08785 0.87 +0.1
1,821,839 - ABIE41_RS08785 0.87 +0.6
1,821,956 - -0.2
1,821,983 - +0.3
1,822,027 + +0.3
1,822,040 - +0.0
1,822,561 - +0.0
1,822,561 - +0.4
1,822,590 + -1.1
1,822,648 + +0.1
1,822,695 + +0.7
1,822,695 + -2.2
1,822,696 - -1.2
1,822,704 + +0.0
1,822,704 + -1.1
1,822,705 - -2.2
1,822,705 - +1.1
1,822,769 - -1.9

Or see this region's nucleotide sequence