Strain Fitness in Bosea sp. OAE506 around ABIE41_RS08510

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS08505 and ABIE41_RS08510 are separated by 6 nucleotidesABIE41_RS08510 and ABIE41_RS08515 are separated by 43 nucleotides ABIE41_RS08505: ABIE41_RS08505 - phospholipase D-like domain-containing protein, at 1,755,036 to 1,756,316 _RS08505 ABIE41_RS08510: ABIE41_RS08510 - DUF3606 domain-containing protein, at 1,756,323 to 1,756,520 _RS08510 ABIE41_RS08515: ABIE41_RS08515 - MATE family efflux transporter, at 1,756,564 to 1,757,949 _RS08515 Position (kb) 1756 1757Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1755.324 kb on + strand, within ABIE41_RS08505at 1755.324 kb on + strand, within ABIE41_RS08505at 1755.324 kb on + strand, within ABIE41_RS08505at 1755.324 kb on + strand, within ABIE41_RS08505at 1755.324 kb on + strand, within ABIE41_RS08505at 1755.324 kb on + strand, within ABIE41_RS08505at 1755.325 kb on - strand, within ABIE41_RS08505at 1755.325 kb on - strand, within ABIE41_RS08505at 1755.325 kb on - strand, within ABIE41_RS08505at 1755.325 kb on - strand, within ABIE41_RS08505at 1755.330 kb on + strand, within ABIE41_RS08505at 1755.330 kb on + strand, within ABIE41_RS08505at 1755.330 kb on + strand, within ABIE41_RS08505at 1755.330 kb on + strand, within ABIE41_RS08505at 1755.330 kb on + strand, within ABIE41_RS08505at 1755.330 kb on + strand, within ABIE41_RS08505at 1755.330 kb on + strand, within ABIE41_RS08505at 1755.330 kb on + strand, within ABIE41_RS08505at 1755.330 kb on + strand, within ABIE41_RS08505at 1755.331 kb on - strand, within ABIE41_RS08505at 1755.331 kb on - strand, within ABIE41_RS08505at 1755.331 kb on - strand, within ABIE41_RS08505at 1755.880 kb on - strand, within ABIE41_RS08505at 1755.880 kb on - strand, within ABIE41_RS08505at 1756.062 kb on + strand, within ABIE41_RS08505at 1756.062 kb on + strand, within ABIE41_RS08505at 1756.062 kb on + strand, within ABIE41_RS08505at 1756.062 kb on + strand, within ABIE41_RS08505at 1756.062 kb on + strand, within ABIE41_RS08505at 1756.062 kb on + strand, within ABIE41_RS08505at 1756.062 kb on + strand, within ABIE41_RS08505at 1756.062 kb on + strand, within ABIE41_RS08505at 1756.062 kb on + strand, within ABIE41_RS08505at 1756.062 kb on + strand, within ABIE41_RS08505at 1756.062 kb on + strand, within ABIE41_RS08505at 1756.062 kb on + strand, within ABIE41_RS08505at 1756.062 kb on + strand, within ABIE41_RS08505at 1756.063 kb on - strand, within ABIE41_RS08505at 1756.063 kb on - strand, within ABIE41_RS08505at 1756.063 kb on - strand, within ABIE41_RS08505at 1756.063 kb on - strand, within ABIE41_RS08505at 1756.063 kb on - strand, within ABIE41_RS08505at 1756.063 kb on - strand, within ABIE41_RS08505at 1756.063 kb on - strand, within ABIE41_RS08505at 1756.063 kb on - strand, within ABIE41_RS08505at 1756.063 kb on - strand, within ABIE41_RS08505at 1756.119 kb on - strand, within ABIE41_RS08505at 1756.119 kb on - strand, within ABIE41_RS08505at 1756.314 kb on + strandat 1756.314 kb on + strandat 1756.314 kb on + strandat 1756.314 kb on + strandat 1756.315 kb on - strandat 1756.324 kb on + strandat 1756.757 kb on + strand, within ABIE41_RS08515at 1756.758 kb on - strand, within ABIE41_RS08515at 1756.765 kb on - strand, within ABIE41_RS08515at 1756.765 kb on - strand, within ABIE41_RS08515at 1756.944 kb on + strand, within ABIE41_RS08515at 1756.944 kb on + strand, within ABIE41_RS08515at 1756.945 kb on - strand, within ABIE41_RS08515at 1757.510 kb on + strand, within ABIE41_RS08515at 1757.510 kb on + strand, within ABIE41_RS08515

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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1,755,324 + ABIE41_RS08505 0.22 +1.2
1,755,324 + ABIE41_RS08505 0.22 +1.0
1,755,324 + ABIE41_RS08505 0.22 +2.0
1,755,324 + ABIE41_RS08505 0.22 +0.9
1,755,324 + ABIE41_RS08505 0.22 -0.3
1,755,324 + ABIE41_RS08505 0.22 -0.1
1,755,325 - ABIE41_RS08505 0.23 +0.4
1,755,325 - ABIE41_RS08505 0.23 +0.5
1,755,325 - ABIE41_RS08505 0.23 +0.9
1,755,325 - ABIE41_RS08505 0.23 +0.9
1,755,330 + ABIE41_RS08505 0.23 +0.1
1,755,330 + ABIE41_RS08505 0.23 +0.3
1,755,330 + ABIE41_RS08505 0.23 -2.9
1,755,330 + ABIE41_RS08505 0.23 -0.8
1,755,330 + ABIE41_RS08505 0.23 +0.6
1,755,330 + ABIE41_RS08505 0.23 +0.5
1,755,330 + ABIE41_RS08505 0.23 +0.6
1,755,330 + ABIE41_RS08505 0.23 +1.7
1,755,330 + ABIE41_RS08505 0.23 +0.0
1,755,331 - ABIE41_RS08505 0.23 +1.0
1,755,331 - ABIE41_RS08505 0.23 +0.1
1,755,331 - ABIE41_RS08505 0.23 -0.4
1,755,880 - ABIE41_RS08505 0.66 +1.6
1,755,880 - ABIE41_RS08505 0.66 +0.4
1,756,062 + ABIE41_RS08505 0.80 +0.2
1,756,062 + ABIE41_RS08505 0.80 +0.6
1,756,062 + ABIE41_RS08505 0.80 +1.3
1,756,062 + ABIE41_RS08505 0.80 +0.6
1,756,062 + ABIE41_RS08505 0.80 -1.0
1,756,062 + ABIE41_RS08505 0.80 +1.3
1,756,062 + ABIE41_RS08505 0.80 +0.7
1,756,062 + ABIE41_RS08505 0.80 -0.1
1,756,062 + ABIE41_RS08505 0.80 -0.3
1,756,062 + ABIE41_RS08505 0.80 +0.8
1,756,062 + ABIE41_RS08505 0.80 +1.0
1,756,062 + ABIE41_RS08505 0.80 +0.7
1,756,062 + ABIE41_RS08505 0.80 +1.8
1,756,063 - ABIE41_RS08505 0.80 -1.7
1,756,063 - ABIE41_RS08505 0.80 -0.2
1,756,063 - ABIE41_RS08505 0.80 +0.7
1,756,063 - ABIE41_RS08505 0.80 +1.5
1,756,063 - ABIE41_RS08505 0.80 +0.6
1,756,063 - ABIE41_RS08505 0.80 +0.6
1,756,063 - ABIE41_RS08505 0.80 +0.1
1,756,063 - ABIE41_RS08505 0.80 +0.2
1,756,063 - ABIE41_RS08505 0.80 -1.7
1,756,119 - ABIE41_RS08505 0.85 +1.3
1,756,119 - ABIE41_RS08505 0.85 +0.3
1,756,314 + -1.9
1,756,314 + -0.7
1,756,314 + -0.7
1,756,314 + +0.6
1,756,315 - +0.4
1,756,324 + +0.6
1,756,757 + ABIE41_RS08515 0.14 -0.1
1,756,758 - ABIE41_RS08515 0.14 +0.9
1,756,765 - ABIE41_RS08515 0.15 +3.2
1,756,765 - ABIE41_RS08515 0.15 +0.3
1,756,944 + ABIE41_RS08515 0.27 +0.1
1,756,944 + ABIE41_RS08515 0.27 -0.3
1,756,945 - ABIE41_RS08515 0.27 +0.1
1,757,510 + ABIE41_RS08515 0.68 -1.2
1,757,510 + ABIE41_RS08515 0.68 +2.3

Or see this region's nucleotide sequence