Strain Fitness in Bosea sp. OAE506 around ABIE41_RS00290

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS00280 and ABIE41_RS00285 are separated by 21 nucleotidesABIE41_RS00285 and ABIE41_RS00290 overlap by 1 nucleotidesABIE41_RS00290 and ABIE41_RS00295 are separated by 145 nucleotidesABIE41_RS00295 and ABIE41_RS00300 are separated by 28 nucleotides ABIE41_RS00280: ABIE41_RS00280 - DUF3309 family protein, at 48,375 to 48,548 _RS00280 ABIE41_RS00285: ABIE41_RS00285 - ornithine cyclodeaminase family protein, at 48,570 to 49,520 _RS00285 ABIE41_RS00290: ABIE41_RS00290 - LapA family protein, at 49,520 to 49,858 _RS00290 ABIE41_RS00295: ABIE41_RS00295 - integration host factor subunit beta, at 50,004 to 50,288 _RS00295 ABIE41_RS00300: ABIE41_RS00300 - signal peptide peptidase SppA, at 50,317 to 51,285 _RS00300 Position (kb) 49 50Strain fitness (log2 ratio) -1 0 1at 48.730 kb on + strand, within ABIE41_RS00285at 48.730 kb on + strand, within ABIE41_RS00285at 48.730 kb on + strand, within ABIE41_RS00285at 48.730 kb on + strand, within ABIE41_RS00285at 48.731 kb on - strand, within ABIE41_RS00285at 48.848 kb on + strand, within ABIE41_RS00285at 49.093 kb on - strand, within ABIE41_RS00285at 49.093 kb on - strand, within ABIE41_RS00285at 49.258 kb on + strand, within ABIE41_RS00285at 49.259 kb on - strand, within ABIE41_RS00285at 49.259 kb on - strand, within ABIE41_RS00285at 49.328 kb on + strand, within ABIE41_RS00285at 49.330 kb on + strand, within ABIE41_RS00285at 49.729 kb on - strand, within ABIE41_RS00290at 49.729 kb on - strand, within ABIE41_RS00290at 50.300 kb on - strandat 50.310 kb on - strandat 50.310 kb on - strandat 50.687 kb on + strand, within ABIE41_RS00300at 50.687 kb on + strand, within ABIE41_RS00300at 50.687 kb on + strand, within ABIE41_RS00300at 50.687 kb on + strand, within ABIE41_RS00300at 50.688 kb on - strand, within ABIE41_RS00300at 50.688 kb on - strand, within ABIE41_RS00300at 50.688 kb on - strand, within ABIE41_RS00300

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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48,730 + ABIE41_RS00285 0.17 -0.4
48,730 + ABIE41_RS00285 0.17 -0.3
48,730 + ABIE41_RS00285 0.17 -0.1
48,730 + ABIE41_RS00285 0.17 -1.4
48,731 - ABIE41_RS00285 0.17 -0.7
48,848 + ABIE41_RS00285 0.29 +1.0
49,093 - ABIE41_RS00285 0.55 -0.0
49,093 - ABIE41_RS00285 0.55 +1.6
49,258 + ABIE41_RS00285 0.72 +0.7
49,259 - ABIE41_RS00285 0.72 +0.1
49,259 - ABIE41_RS00285 0.72 +1.2
49,328 + ABIE41_RS00285 0.80 +0.5
49,330 + ABIE41_RS00285 0.80 +0.6
49,729 - ABIE41_RS00290 0.62 -0.5
49,729 - ABIE41_RS00290 0.62 +1.5
50,300 - -1.0
50,310 - +0.5
50,310 - -0.2
50,687 + ABIE41_RS00300 0.38 -0.3
50,687 + ABIE41_RS00300 0.38 -0.2
50,687 + ABIE41_RS00300 0.38 +0.2
50,687 + ABIE41_RS00300 0.38 -0.8
50,688 - ABIE41_RS00300 0.38 -0.9
50,688 - ABIE41_RS00300 0.38 -0.2
50,688 - ABIE41_RS00300 0.38 +1.6

Or see this region's nucleotide sequence