Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS30705

Experiment: D-Glucose-6-Phosphate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS30705 and ABIE40_RS30710 are separated by 12 nucleotidesABIE40_RS30710 and ABIE40_RS30715 are separated by 8 nucleotidesABIE40_RS30715 and ABIE40_RS30720 overlap by 47 nucleotidesABIE40_RS30720 and ABIE40_RS30725 are separated by 107 nucleotides ABIE40_RS30705: ABIE40_RS30705 - hypothetical protein, at 832,370 to 832,585 _RS30705 ABIE40_RS30710: ABIE40_RS30710 - hypothetical protein, at 832,598 to 832,774 _RS30710 ABIE40_RS30715: ABIE40_RS30715 - hypothetical protein, at 832,783 to 832,971 _RS30715 ABIE40_RS30720: ABIE40_RS30720 - hypothetical protein, at 832,925 to 833,455 _RS30720 ABIE40_RS30725: ABIE40_RS30725 - NADH-quinone oxidoreductase subunit C, at 833,563 to 834,186 _RS30725 Position (kb) 832 833Strain fitness (log2 ratio) -2 -1 0 1 2at 831.436 kb on + strandat 831.437 kb on - strandat 831.587 kb on + strandat 831.587 kb on + strandat 831.587 kb on + strandat 831.588 kb on - strandat 831.588 kb on - strandat 831.597 kb on + strandat 831.597 kb on + strandat 831.617 kb on - strandat 831.627 kb on + strandat 831.628 kb on - strandat 831.669 kb on + strandat 831.669 kb on + strandat 831.670 kb on - strandat 831.814 kb on + strandat 831.856 kb on + strandat 831.856 kb on + strandat 831.857 kb on - strandat 831.857 kb on - strandat 831.879 kb on - strandat 831.982 kb on + strandat 831.983 kb on - strandat 831.983 kb on - strandat 831.989 kb on - strandat 831.989 kb on - strandat 832.167 kb on + strandat 832.177 kb on - strandat 832.177 kb on - strandat 832.201 kb on + strandat 832.202 kb on - strandat 832.457 kb on - strand, within ABIE40_RS30705at 832.492 kb on + strand, within ABIE40_RS30705at 832.493 kb on - strand, within ABIE40_RS30705at 832.551 kb on - strand, within ABIE40_RS30705at 832.741 kb on + strand, within ABIE40_RS30710at 832.758 kb on - strandat 832.782 kb on + strandat 832.783 kb on - strandat 832.783 kb on - strandat 832.797 kb on + strandat 832.798 kb on - strandat 832.969 kb on + strandat 832.970 kb on - strandat 833.141 kb on - strand, within ABIE40_RS30720at 833.252 kb on - strand, within ABIE40_RS30720at 833.414 kb on - strandat 833.465 kb on - strandat 833.538 kb on + strandat 833.574 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C)
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831,436 + -0.6
831,437 - -0.6
831,587 + -0.5
831,587 + +0.5
831,587 + +0.7
831,588 - -1.0
831,588 - -0.5
831,597 + +0.7
831,597 + +0.3
831,617 - -0.6
831,627 + -0.6
831,628 - +0.5
831,669 + -0.5
831,669 + -1.7
831,670 - -1.1
831,814 + -0.4
831,856 + -0.3
831,856 + +1.5
831,857 - -0.9
831,857 - -1.0
831,879 - +1.6
831,982 + -1.8
831,983 - +0.1
831,983 - +0.7
831,989 - +1.7
831,989 - +0.7
832,167 + -1.2
832,177 - -0.1
832,177 - +0.0
832,201 + -1.3
832,202 - -0.5
832,457 - ABIE40_RS30705 0.40 +0.3
832,492 + ABIE40_RS30705 0.56 -1.6
832,493 - ABIE40_RS30705 0.57 -0.9
832,551 - ABIE40_RS30705 0.84 -1.3
832,741 + ABIE40_RS30710 0.81 +2.3
832,758 - -1.1
832,782 + +0.5
832,783 - -0.4
832,783 - -0.8
832,797 + -0.3
832,798 - +0.1
832,969 + +0.2
832,970 - -1.0
833,141 - ABIE40_RS30720 0.41 -0.2
833,252 - ABIE40_RS30720 0.62 -0.2
833,414 - +0.5
833,465 - +0.9
833,538 + +0.1
833,574 + -2.3

Or see this region's nucleotide sequence