Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS28625

Experiment: D-Glucose-6-Phosphate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS28610 and ABIE40_RS28615 are separated by 10 nucleotidesABIE40_RS28615 and ABIE40_RS28620 are separated by 6 nucleotidesABIE40_RS28620 and ABIE40_RS28625 are separated by 222 nucleotidesABIE40_RS28625 and ABIE40_RS28630 are separated by 237 nucleotidesABIE40_RS28630 and ABIE40_RS28635 are separated by 139 nucleotides ABIE40_RS28610: ABIE40_RS28610 - IS66 family insertion sequence element accessory protein TnpB, at 423,292 to 423,648 _RS28610 ABIE40_RS28615: ABIE40_RS28615 - transposase, at 423,659 to 424,120 _RS28615 ABIE40_RS28620: ABIE40_RS28620 - FAD-dependent oxidoreductase, at 424,127 to 424,381 _RS28620 ABIE40_RS28625: ABIE40_RS28625 - divalent metal cation transporter, at 424,604 to 425,812 _RS28625 ABIE40_RS28630: ABIE40_RS28630 - hypothetical protein, at 426,050 to 426,244 _RS28630 ABIE40_RS28635: ABIE40_RS28635 - UdgX family uracil-DNA binding protein, at 426,384 to 427,031 _RS28635 Position (kb) 424 425 426Strain fitness (log2 ratio) -2 -1 0 1 2 3at 424.072 kb on + strand, within ABIE40_RS28615at 424.073 kb on - strand, within ABIE40_RS28615at 424.073 kb on - strand, within ABIE40_RS28615at 424.073 kb on - strand, within ABIE40_RS28615at 424.090 kb on + strandat 424.090 kb on + strandat 424.090 kb on + strandat 424.090 kb on + strandat 424.090 kb on + strandat 424.090 kb on + strandat 424.091 kb on - strandat 424.091 kb on - strandat 424.091 kb on - strandat 424.301 kb on + strand, within ABIE40_RS28620at 424.301 kb on + strand, within ABIE40_RS28620at 424.301 kb on + strand, within ABIE40_RS28620at 424.302 kb on - strand, within ABIE40_RS28620at 424.302 kb on - strand, within ABIE40_RS28620at 424.302 kb on - strand, within ABIE40_RS28620at 424.303 kb on + strand, within ABIE40_RS28620at 424.303 kb on + strand, within ABIE40_RS28620at 424.303 kb on + strand, within ABIE40_RS28620at 424.304 kb on - strand, within ABIE40_RS28620at 424.305 kb on + strand, within ABIE40_RS28620at 424.305 kb on + strand, within ABIE40_RS28620at 424.305 kb on + strand, within ABIE40_RS28620at 424.306 kb on - strand, within ABIE40_RS28620at 424.306 kb on - strand, within ABIE40_RS28620at 424.306 kb on - strand, within ABIE40_RS28620at 424.306 kb on - strand, within ABIE40_RS28620at 424.306 kb on - strand, within ABIE40_RS28620at 424.306 kb on - strand, within ABIE40_RS28620at 424.434 kb on + strandat 424.435 kb on - strandat 424.435 kb on - strandat 424.435 kb on - strandat 424.473 kb on + strandat 424.709 kb on - strandat 424.830 kb on - strand, within ABIE40_RS28625at 424.830 kb on - strand, within ABIE40_RS28625at 424.854 kb on + strand, within ABIE40_RS28625at 424.854 kb on + strand, within ABIE40_RS28625at 424.855 kb on - strand, within ABIE40_RS28625at 425.033 kb on + strand, within ABIE40_RS28625at 425.034 kb on - strand, within ABIE40_RS28625at 425.394 kb on + strand, within ABIE40_RS28625at 425.395 kb on - strand, within ABIE40_RS28625at 425.569 kb on + strand, within ABIE40_RS28625at 425.569 kb on + strand, within ABIE40_RS28625at 425.570 kb on - strand, within ABIE40_RS28625at 425.570 kb on - strand, within ABIE40_RS28625at 425.570 kb on - strand, within ABIE40_RS28625at 425.766 kb on + strandat 425.766 kb on + strandat 425.922 kb on + strandat 425.923 kb on - strandat 425.923 kb on - strandat 426.272 kb on - strandat 426.272 kb on - strandat 426.291 kb on + strandat 426.326 kb on - strandat 426.326 kb on - strandat 426.394 kb on + strandat 426.395 kb on - strandat 426.402 kb on + strandat 426.402 kb on + strandat 426.542 kb on + strand, within ABIE40_RS28635at 426.542 kb on + strand, within ABIE40_RS28635at 426.618 kb on + strand, within ABIE40_RS28635at 426.618 kb on + strand, within ABIE40_RS28635at 426.619 kb on - strand, within ABIE40_RS28635at 426.619 kb on - strand, within ABIE40_RS28635at 426.619 kb on - strand, within ABIE40_RS28635at 426.739 kb on + strand, within ABIE40_RS28635at 426.739 kb on + strand, within ABIE40_RS28635at 426.739 kb on + strand, within ABIE40_RS28635at 426.740 kb on - strand, within ABIE40_RS28635

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C)
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424,072 + ABIE40_RS28615 0.89 +0.5
424,073 - ABIE40_RS28615 0.90 +2.2
424,073 - ABIE40_RS28615 0.90 -1.1
424,073 - ABIE40_RS28615 0.90 -0.6
424,090 + +1.3
424,090 + +0.4
424,090 + -0.4
424,090 + -1.9
424,090 + -0.3
424,090 + -1.8
424,091 - +0.2
424,091 - -1.9
424,091 - -0.8
424,301 + ABIE40_RS28620 0.68 -0.1
424,301 + ABIE40_RS28620 0.68 -0.3
424,301 + ABIE40_RS28620 0.68 -0.9
424,302 - ABIE40_RS28620 0.69 +0.4
424,302 - ABIE40_RS28620 0.69 +0.6
424,302 - ABIE40_RS28620 0.69 -0.8
424,303 + ABIE40_RS28620 0.69 +1.9
424,303 + ABIE40_RS28620 0.69 +0.6
424,303 + ABIE40_RS28620 0.69 +0.5
424,304 - ABIE40_RS28620 0.69 +2.8
424,305 + ABIE40_RS28620 0.70 +0.0
424,305 + ABIE40_RS28620 0.70 +0.4
424,305 + ABIE40_RS28620 0.70 +0.4
424,306 - ABIE40_RS28620 0.70 +0.1
424,306 - ABIE40_RS28620 0.70 -0.7
424,306 - ABIE40_RS28620 0.70 -1.4
424,306 - ABIE40_RS28620 0.70 +0.1
424,306 - ABIE40_RS28620 0.70 -0.8
424,306 - ABIE40_RS28620 0.70 +0.5
424,434 + +0.4
424,435 - -0.2
424,435 - +1.2
424,435 - -0.5
424,473 + +0.2
424,709 - +0.0
424,830 - ABIE40_RS28625 0.19 +0.2
424,830 - ABIE40_RS28625 0.19 -0.1
424,854 + ABIE40_RS28625 0.21 +0.6
424,854 + ABIE40_RS28625 0.21 -1.0
424,855 - ABIE40_RS28625 0.21 +2.4
425,033 + ABIE40_RS28625 0.35 +0.3
425,034 - ABIE40_RS28625 0.36 -0.0
425,394 + ABIE40_RS28625 0.65 -0.8
425,395 - ABIE40_RS28625 0.65 -0.3
425,569 + ABIE40_RS28625 0.80 -1.3
425,569 + ABIE40_RS28625 0.80 +2.0
425,570 - ABIE40_RS28625 0.80 +0.5
425,570 - ABIE40_RS28625 0.80 +1.3
425,570 - ABIE40_RS28625 0.80 +0.2
425,766 + -1.6
425,766 + -0.6
425,922 + +0.5
425,923 - -0.1
425,923 - +1.5
426,272 - -0.5
426,272 - -0.0
426,291 + +0.7
426,326 - -0.7
426,326 - +0.1
426,394 + +0.1
426,395 - -0.0
426,402 + +1.6
426,402 + -1.2
426,542 + ABIE40_RS28635 0.24 +0.8
426,542 + ABIE40_RS28635 0.24 -0.1
426,618 + ABIE40_RS28635 0.36 -1.8
426,618 + ABIE40_RS28635 0.36 -1.1
426,619 - ABIE40_RS28635 0.36 -0.5
426,619 - ABIE40_RS28635 0.36 -0.2
426,619 - ABIE40_RS28635 0.36 +0.7
426,739 + ABIE40_RS28635 0.55 -0.5
426,739 + ABIE40_RS28635 0.55 -1.4
426,739 + ABIE40_RS28635 0.55 +0.7
426,740 - ABIE40_RS28635 0.55 +0.5

Or see this region's nucleotide sequence