Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS25295

Experiment: D-Glucose-6-Phosphate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS25285 and ABIE40_RS25290 are separated by 7 nucleotidesABIE40_RS25290 and ABIE40_RS25295 overlap by 4 nucleotidesABIE40_RS25295 and ABIE40_RS25300 are separated by 29 nucleotidesABIE40_RS25300 and ABIE40_RS25305 overlap by 1 nucleotides ABIE40_RS25285: ABIE40_RS25285 - cupin domain-containing protein, at 1,232,949 to 1,233,278 _RS25285 ABIE40_RS25290: ABIE40_RS25290 - 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD, at 1,233,286 to 1,234,041 _RS25290 ABIE40_RS25295: ABIE40_RS25295 - 5-dehydro-4-deoxy-D-glucuronate isomerase, at 1,234,038 to 1,234,880 _RS25295 ABIE40_RS25300: ABIE40_RS25300 - ATP-binding cassette domain-containing protein, at 1,234,910 to 1,235,647 _RS25300 ABIE40_RS25305: ABIE40_RS25305 - ABC transporter permease, at 1,235,647 to 1,236,666 _RS25305 Position (kb) 1234 1235Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1233.112 kb on + strand, within ABIE40_RS25285at 1233.112 kb on + strand, within ABIE40_RS25285at 1233.113 kb on - strand, within ABIE40_RS25285at 1233.113 kb on - strand, within ABIE40_RS25285at 1233.113 kb on - strand, within ABIE40_RS25285at 1233.113 kb on - strand, within ABIE40_RS25285at 1233.113 kb on - strand, within ABIE40_RS25285at 1233.113 kb on - strand, within ABIE40_RS25285at 1233.125 kb on + strand, within ABIE40_RS25285at 1233.126 kb on - strand, within ABIE40_RS25285at 1233.335 kb on + strandat 1233.335 kb on + strandat 1233.336 kb on - strandat 1233.336 kb on - strandat 1233.336 kb on - strandat 1233.336 kb on - strandat 1233.378 kb on + strand, within ABIE40_RS25290at 1233.378 kb on + strand, within ABIE40_RS25290at 1233.378 kb on + strand, within ABIE40_RS25290at 1233.378 kb on + strand, within ABIE40_RS25290at 1233.378 kb on + strand, within ABIE40_RS25290at 1233.379 kb on - strand, within ABIE40_RS25290at 1233.379 kb on - strand, within ABIE40_RS25290at 1233.379 kb on - strand, within ABIE40_RS25290at 1233.379 kb on - strand, within ABIE40_RS25290at 1233.379 kb on - strand, within ABIE40_RS25290at 1233.379 kb on - strand, within ABIE40_RS25290at 1233.379 kb on - strand, within ABIE40_RS25290at 1233.463 kb on - strand, within ABIE40_RS25290at 1233.480 kb on - strand, within ABIE40_RS25290at 1233.576 kb on - strand, within ABIE40_RS25290at 1233.842 kb on - strand, within ABIE40_RS25290at 1234.256 kb on - strand, within ABIE40_RS25295at 1234.256 kb on - strand, within ABIE40_RS25295at 1234.261 kb on + strand, within ABIE40_RS25295at 1234.261 kb on + strand, within ABIE40_RS25295at 1234.261 kb on + strand, within ABIE40_RS25295at 1234.261 kb on + strand, within ABIE40_RS25295at 1234.261 kb on + strand, within ABIE40_RS25295at 1234.261 kb on + strand, within ABIE40_RS25295at 1234.261 kb on + strand, within ABIE40_RS25295at 1234.261 kb on + strand, within ABIE40_RS25295at 1234.261 kb on + strand, within ABIE40_RS25295at 1234.261 kb on + strand, within ABIE40_RS25295at 1234.261 kb on + strand, within ABIE40_RS25295at 1234.262 kb on - strand, within ABIE40_RS25295at 1234.262 kb on - strand, within ABIE40_RS25295at 1234.378 kb on + strand, within ABIE40_RS25295at 1234.378 kb on + strand, within ABIE40_RS25295at 1234.378 kb on + strand, within ABIE40_RS25295at 1234.379 kb on - strand, within ABIE40_RS25295at 1234.495 kb on + strand, within ABIE40_RS25295at 1234.495 kb on + strand, within ABIE40_RS25295at 1234.495 kb on + strand, within ABIE40_RS25295at 1234.495 kb on + strand, within ABIE40_RS25295at 1234.495 kb on + strand, within ABIE40_RS25295at 1234.495 kb on + strand, within ABIE40_RS25295at 1234.495 kb on + strand, within ABIE40_RS25295at 1234.495 kb on + strand, within ABIE40_RS25295at 1234.496 kb on - strand, within ABIE40_RS25295at 1234.496 kb on - strand, within ABIE40_RS25295at 1234.559 kb on + strand, within ABIE40_RS25295at 1234.560 kb on - strand, within ABIE40_RS25295at 1234.561 kb on + strand, within ABIE40_RS25295at 1234.561 kb on + strand, within ABIE40_RS25295at 1234.561 kb on + strand, within ABIE40_RS25295at 1234.561 kb on + strand, within ABIE40_RS25295at 1234.561 kb on + strand, within ABIE40_RS25295at 1234.562 kb on - strand, within ABIE40_RS25295at 1234.562 kb on - strand, within ABIE40_RS25295at 1234.562 kb on - strand, within ABIE40_RS25295at 1234.589 kb on - strand, within ABIE40_RS25295at 1234.753 kb on + strand, within ABIE40_RS25295at 1234.753 kb on + strand, within ABIE40_RS25295at 1234.754 kb on - strand, within ABIE40_RS25295at 1234.754 kb on - strand, within ABIE40_RS25295at 1234.754 kb on - strand, within ABIE40_RS25295at 1234.754 kb on - strand, within ABIE40_RS25295at 1234.820 kb on + strandat 1234.872 kb on + strandat 1234.872 kb on + strandat 1234.873 kb on - strandat 1234.873 kb on - strandat 1234.873 kb on - strandat 1234.873 kb on - strandat 1234.873 kb on - strandat 1234.873 kb on - strandat 1234.873 kb on - strandat 1234.873 kb on - strandat 1234.873 kb on - strandat 1234.873 kb on - strandat 1234.873 kb on - strandat 1234.926 kb on + strandat 1234.926 kb on + strandat 1234.927 kb on - strandat 1234.927 kb on - strandat 1234.927 kb on - strandat 1234.930 kb on - strandat 1234.973 kb on + strandat 1234.973 kb on + strandat 1234.974 kb on - strandat 1235.020 kb on - strand, within ABIE40_RS25300at 1235.028 kb on + strand, within ABIE40_RS25300at 1235.028 kb on + strand, within ABIE40_RS25300at 1235.164 kb on - strand, within ABIE40_RS25300at 1235.164 kb on - strand, within ABIE40_RS25300at 1235.249 kb on - strand, within ABIE40_RS25300at 1235.381 kb on - strand, within ABIE40_RS25300at 1235.381 kb on - strand, within ABIE40_RS25300at 1235.388 kb on + strand, within ABIE40_RS25300at 1235.388 kb on + strand, within ABIE40_RS25300at 1235.388 kb on + strand, within ABIE40_RS25300at 1235.388 kb on + strand, within ABIE40_RS25300at 1235.388 kb on + strand, within ABIE40_RS25300at 1235.463 kb on + strand, within ABIE40_RS25300at 1235.463 kb on + strand, within ABIE40_RS25300at 1235.463 kb on + strand, within ABIE40_RS25300at 1235.614 kb on + strandat 1235.615 kb on - strandat 1235.615 kb on - strandat 1235.684 kb on - strandat 1235.726 kb on + strandat 1235.727 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C)
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1,233,112 + ABIE40_RS25285 0.49 -0.0
1,233,112 + ABIE40_RS25285 0.49 +0.3
1,233,113 - ABIE40_RS25285 0.50 +0.9
1,233,113 - ABIE40_RS25285 0.50 +2.3
1,233,113 - ABIE40_RS25285 0.50 +1.9
1,233,113 - ABIE40_RS25285 0.50 -0.5
1,233,113 - ABIE40_RS25285 0.50 -1.0
1,233,113 - ABIE40_RS25285 0.50 -1.0
1,233,125 + ABIE40_RS25285 0.53 +0.7
1,233,126 - ABIE40_RS25285 0.54 -0.6
1,233,335 + +1.6
1,233,335 + -0.5
1,233,336 - +0.3
1,233,336 - +0.6
1,233,336 - -0.9
1,233,336 - +1.0
1,233,378 + ABIE40_RS25290 0.12 -2.0
1,233,378 + ABIE40_RS25290 0.12 -0.1
1,233,378 + ABIE40_RS25290 0.12 -0.3
1,233,378 + ABIE40_RS25290 0.12 -0.0
1,233,378 + ABIE40_RS25290 0.12 -0.7
1,233,379 - ABIE40_RS25290 0.12 -0.2
1,233,379 - ABIE40_RS25290 0.12 -0.1
1,233,379 - ABIE40_RS25290 0.12 -0.9
1,233,379 - ABIE40_RS25290 0.12 +0.4
1,233,379 - ABIE40_RS25290 0.12 -0.3
1,233,379 - ABIE40_RS25290 0.12 -1.5
1,233,379 - ABIE40_RS25290 0.12 +0.4
1,233,463 - ABIE40_RS25290 0.23 +0.7
1,233,480 - ABIE40_RS25290 0.26 -0.5
1,233,576 - ABIE40_RS25290 0.38 +0.2
1,233,842 - ABIE40_RS25290 0.74 +0.4
1,234,256 - ABIE40_RS25295 0.26 -0.6
1,234,256 - ABIE40_RS25295 0.26 -0.9
1,234,261 + ABIE40_RS25295 0.26 -0.8
1,234,261 + ABIE40_RS25295 0.26 -0.5
1,234,261 + ABIE40_RS25295 0.26 +1.3
1,234,261 + ABIE40_RS25295 0.26 -0.2
1,234,261 + ABIE40_RS25295 0.26 -0.4
1,234,261 + ABIE40_RS25295 0.26 +0.4
1,234,261 + ABIE40_RS25295 0.26 +0.0
1,234,261 + ABIE40_RS25295 0.26 -0.6
1,234,261 + ABIE40_RS25295 0.26 +2.0
1,234,261 + ABIE40_RS25295 0.26 -0.1
1,234,261 + ABIE40_RS25295 0.26 -1.9
1,234,262 - ABIE40_RS25295 0.27 +0.4
1,234,262 - ABIE40_RS25295 0.27 -1.9
1,234,378 + ABIE40_RS25295 0.40 -0.2
1,234,378 + ABIE40_RS25295 0.40 -1.2
1,234,378 + ABIE40_RS25295 0.40 +0.1
1,234,379 - ABIE40_RS25295 0.40 +0.1
1,234,495 + ABIE40_RS25295 0.54 +1.1
1,234,495 + ABIE40_RS25295 0.54 +0.1
1,234,495 + ABIE40_RS25295 0.54 +0.8
1,234,495 + ABIE40_RS25295 0.54 +0.3
1,234,495 + ABIE40_RS25295 0.54 -3.1
1,234,495 + ABIE40_RS25295 0.54 +0.5
1,234,495 + ABIE40_RS25295 0.54 -0.0
1,234,495 + ABIE40_RS25295 0.54 -0.0
1,234,496 - ABIE40_RS25295 0.54 -0.9
1,234,496 - ABIE40_RS25295 0.54 -0.6
1,234,559 + ABIE40_RS25295 0.62 +0.8
1,234,560 - ABIE40_RS25295 0.62 +1.1
1,234,561 + ABIE40_RS25295 0.62 -0.0
1,234,561 + ABIE40_RS25295 0.62 -0.1
1,234,561 + ABIE40_RS25295 0.62 -0.3
1,234,561 + ABIE40_RS25295 0.62 -0.3
1,234,561 + ABIE40_RS25295 0.62 +0.9
1,234,562 - ABIE40_RS25295 0.62 -1.1
1,234,562 - ABIE40_RS25295 0.62 -0.6
1,234,562 - ABIE40_RS25295 0.62 +0.1
1,234,589 - ABIE40_RS25295 0.65 -0.5
1,234,753 + ABIE40_RS25295 0.85 -0.9
1,234,753 + ABIE40_RS25295 0.85 +0.9
1,234,754 - ABIE40_RS25295 0.85 +0.0
1,234,754 - ABIE40_RS25295 0.85 -0.3
1,234,754 - ABIE40_RS25295 0.85 +0.7
1,234,754 - ABIE40_RS25295 0.85 +0.2
1,234,820 + +0.5
1,234,872 + +0.5
1,234,872 + -0.5
1,234,873 - -0.9
1,234,873 - +0.1
1,234,873 - +0.4
1,234,873 - -1.9
1,234,873 - +0.2
1,234,873 - -0.7
1,234,873 - +0.4
1,234,873 - -0.2
1,234,873 - +0.3
1,234,873 - -0.2
1,234,873 - -1.5
1,234,926 + +0.2
1,234,926 + +0.3
1,234,927 - +1.6
1,234,927 - +0.3
1,234,927 - -0.1
1,234,930 - -0.1
1,234,973 + +0.7
1,234,973 + -0.4
1,234,974 - +0.2
1,235,020 - ABIE40_RS25300 0.15 +0.6
1,235,028 + ABIE40_RS25300 0.16 +0.5
1,235,028 + ABIE40_RS25300 0.16 +0.2
1,235,164 - ABIE40_RS25300 0.34 +1.0
1,235,164 - ABIE40_RS25300 0.34 +0.2
1,235,249 - ABIE40_RS25300 0.46 -0.6
1,235,381 - ABIE40_RS25300 0.64 +0.3
1,235,381 - ABIE40_RS25300 0.64 +1.3
1,235,388 + ABIE40_RS25300 0.65 +1.9
1,235,388 + ABIE40_RS25300 0.65 +0.6
1,235,388 + ABIE40_RS25300 0.65 +1.2
1,235,388 + ABIE40_RS25300 0.65 -0.6
1,235,388 + ABIE40_RS25300 0.65 -1.9
1,235,463 + ABIE40_RS25300 0.75 +0.5
1,235,463 + ABIE40_RS25300 0.75 +0.2
1,235,463 + ABIE40_RS25300 0.75 -0.4
1,235,614 + -1.2
1,235,615 - +0.1
1,235,615 - -0.5
1,235,684 - -1.2
1,235,726 + +0.7
1,235,727 - -0.1

Or see this region's nucleotide sequence