Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS23250

Experiment: D-Glucose-6-Phosphate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS23240 and ABIE40_RS23245 are separated by 150 nucleotidesABIE40_RS23245 and ABIE40_RS23250 are separated by 93 nucleotidesABIE40_RS23250 and ABIE40_RS23255 are separated by 67 nucleotides ABIE40_RS23240: ABIE40_RS23240 - FCD domain-containing protein, at 796,951 to 797,622 _RS23240 ABIE40_RS23245: ABIE40_RS23245 - YigZ family protein, at 797,773 to 798,411 _RS23245 ABIE40_RS23250: ABIE40_RS23250 - hypothetical protein, at 798,505 to 799,401 _RS23250 ABIE40_RS23255: ABIE40_RS23255 - quinolinate synthase NadA, at 799,469 to 800,440 _RS23255 Position (kb) 798 799 800Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 797.745 kb on + strandat 797.746 kb on - strandat 797.746 kb on - strandat 797.746 kb on - strandat 797.746 kb on - strandat 797.746 kb on - strandat 797.746 kb on - strandat 797.746 kb on - strandat 797.746 kb on - strandat 797.746 kb on - strandat 797.938 kb on + strand, within ABIE40_RS23245at 797.938 kb on + strand, within ABIE40_RS23245at 797.938 kb on + strand, within ABIE40_RS23245at 797.939 kb on - strand, within ABIE40_RS23245at 797.939 kb on - strand, within ABIE40_RS23245at 797.939 kb on - strand, within ABIE40_RS23245at 797.939 kb on - strand, within ABIE40_RS23245at 798.142 kb on + strand, within ABIE40_RS23245at 798.142 kb on + strand, within ABIE40_RS23245at 798.142 kb on + strand, within ABIE40_RS23245at 798.142 kb on + strand, within ABIE40_RS23245at 798.142 kb on + strand, within ABIE40_RS23245at 798.142 kb on + strand, within ABIE40_RS23245at 798.142 kb on + strand, within ABIE40_RS23245at 798.143 kb on - strand, within ABIE40_RS23245at 798.143 kb on - strand, within ABIE40_RS23245at 798.143 kb on - strand, within ABIE40_RS23245at 798.143 kb on - strand, within ABIE40_RS23245at 798.143 kb on - strand, within ABIE40_RS23245at 798.143 kb on - strand, within ABIE40_RS23245at 798.203 kb on + strand, within ABIE40_RS23245at 798.203 kb on + strand, within ABIE40_RS23245at 798.204 kb on - strand, within ABIE40_RS23245at 798.204 kb on - strand, within ABIE40_RS23245at 798.204 kb on - strand, within ABIE40_RS23245at 798.204 kb on - strand, within ABIE40_RS23245at 798.227 kb on + strand, within ABIE40_RS23245at 798.227 kb on + strand, within ABIE40_RS23245at 798.228 kb on - strand, within ABIE40_RS23245at 798.228 kb on - strand, within ABIE40_RS23245at 798.228 kb on - strand, within ABIE40_RS23245at 798.228 kb on - strand, within ABIE40_RS23245at 798.277 kb on + strand, within ABIE40_RS23245at 798.411 kb on + strandat 798.487 kb on + strandat 798.488 kb on - strandat 798.576 kb on + strandat 798.577 kb on - strandat 798.706 kb on + strand, within ABIE40_RS23250at 798.706 kb on + strand, within ABIE40_RS23250at 798.706 kb on + strand, within ABIE40_RS23250at 798.706 kb on + strand, within ABIE40_RS23250at 798.706 kb on + strand, within ABIE40_RS23250at 798.706 kb on + strand, within ABIE40_RS23250at 798.707 kb on - strand, within ABIE40_RS23250at 798.707 kb on - strand, within ABIE40_RS23250at 798.707 kb on - strand, within ABIE40_RS23250at 798.708 kb on + strand, within ABIE40_RS23250at 798.708 kb on + strand, within ABIE40_RS23250at 798.708 kb on + strand, within ABIE40_RS23250at 798.708 kb on + strand, within ABIE40_RS23250at 798.708 kb on + strand, within ABIE40_RS23250at 798.708 kb on + strand, within ABIE40_RS23250at 798.708 kb on + strand, within ABIE40_RS23250at 798.708 kb on + strand, within ABIE40_RS23250at 798.708 kb on + strand, within ABIE40_RS23250at 798.708 kb on + strand, within ABIE40_RS23250at 798.709 kb on - strand, within ABIE40_RS23250at 798.709 kb on - strand, within ABIE40_RS23250at 798.709 kb on - strand, within ABIE40_RS23250at 798.709 kb on - strand, within ABIE40_RS23250at 798.709 kb on - strand, within ABIE40_RS23250at 798.709 kb on - strand, within ABIE40_RS23250at 798.709 kb on - strand, within ABIE40_RS23250at 798.709 kb on - strand, within ABIE40_RS23250at 798.769 kb on + strand, within ABIE40_RS23250at 798.769 kb on + strand, within ABIE40_RS23250at 798.769 kb on + strand, within ABIE40_RS23250at 798.832 kb on + strand, within ABIE40_RS23250at 798.832 kb on + strand, within ABIE40_RS23250at 798.832 kb on + strand, within ABIE40_RS23250at 798.833 kb on - strand, within ABIE40_RS23250at 798.833 kb on - strand, within ABIE40_RS23250at 798.833 kb on - strand, within ABIE40_RS23250at 798.838 kb on + strand, within ABIE40_RS23250at 798.838 kb on + strand, within ABIE40_RS23250at 798.838 kb on + strand, within ABIE40_RS23250at 798.838 kb on + strand, within ABIE40_RS23250at 798.838 kb on + strand, within ABIE40_RS23250at 798.839 kb on - strand, within ABIE40_RS23250at 798.839 kb on - strand, within ABIE40_RS23250at 798.898 kb on - strand, within ABIE40_RS23250at 798.898 kb on - strand, within ABIE40_RS23250at 799.015 kb on + strand, within ABIE40_RS23250at 799.016 kb on - strand, within ABIE40_RS23250at 799.027 kb on + strand, within ABIE40_RS23250at 799.027 kb on + strand, within ABIE40_RS23250at 799.028 kb on - strand, within ABIE40_RS23250at 799.144 kb on + strand, within ABIE40_RS23250at 799.404 kb on + strandat 799.425 kb on + strandat 799.426 kb on - strandat 799.456 kb on - strandat 799.499 kb on + strandat 799.499 kb on + strandat 799.499 kb on + strandat 799.499 kb on + strandat 799.499 kb on + strandat 799.500 kb on - strandat 799.500 kb on - strandat 799.609 kb on + strand, within ABIE40_RS23255at 799.609 kb on + strand, within ABIE40_RS23255at 799.609 kb on + strand, within ABIE40_RS23255at 799.610 kb on - strand, within ABIE40_RS23255at 799.610 kb on - strand, within ABIE40_RS23255at 799.610 kb on - strand, within ABIE40_RS23255at 799.610 kb on - strand, within ABIE40_RS23255at 799.613 kb on + strand, within ABIE40_RS23255at 799.614 kb on - strand, within ABIE40_RS23255at 799.614 kb on - strand, within ABIE40_RS23255at 799.614 kb on - strand, within ABIE40_RS23255at 799.614 kb on - strand, within ABIE40_RS23255at 799.874 kb on + strand, within ABIE40_RS23255at 799.874 kb on + strand, within ABIE40_RS23255at 799.991 kb on + strand, within ABIE40_RS23255at 799.991 kb on + strand, within ABIE40_RS23255at 799.992 kb on - strand, within ABIE40_RS23255at 799.992 kb on - strand, within ABIE40_RS23255at 799.992 kb on - strand, within ABIE40_RS23255at 799.992 kb on - strand, within ABIE40_RS23255at 800.317 kb on + strand, within ABIE40_RS23255at 800.317 kb on + strand, within ABIE40_RS23255at 800.317 kb on + strand, within ABIE40_RS23255at 800.318 kb on - strand, within ABIE40_RS23255at 800.318 kb on - strand, within ABIE40_RS23255at 800.318 kb on - strand, within ABIE40_RS23255at 800.318 kb on - strand, within ABIE40_RS23255at 800.318 kb on - strand, within ABIE40_RS23255at 800.318 kb on - strand, within ABIE40_RS23255at 800.341 kb on + strand, within ABIE40_RS23255

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C)
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797,745 + -0.4
797,746 - +2.6
797,746 - -2.1
797,746 - -1.9
797,746 - -0.6
797,746 - -1.9
797,746 - -1.7
797,746 - +0.7
797,746 - +1.4
797,746 - -1.9
797,938 + ABIE40_RS23245 0.26 +1.4
797,938 + ABIE40_RS23245 0.26 -0.2
797,938 + ABIE40_RS23245 0.26 +0.1
797,939 - ABIE40_RS23245 0.26 -0.8
797,939 - ABIE40_RS23245 0.26 +0.7
797,939 - ABIE40_RS23245 0.26 -0.6
797,939 - ABIE40_RS23245 0.26 +0.5
798,142 + ABIE40_RS23245 0.58 -0.1
798,142 + ABIE40_RS23245 0.58 -0.6
798,142 + ABIE40_RS23245 0.58 -0.0
798,142 + ABIE40_RS23245 0.58 +0.4
798,142 + ABIE40_RS23245 0.58 -0.8
798,142 + ABIE40_RS23245 0.58 +1.1
798,142 + ABIE40_RS23245 0.58 +0.8
798,143 - ABIE40_RS23245 0.58 -2.1
798,143 - ABIE40_RS23245 0.58 +0.3
798,143 - ABIE40_RS23245 0.58 -0.9
798,143 - ABIE40_RS23245 0.58 +0.7
798,143 - ABIE40_RS23245 0.58 -0.3
798,143 - ABIE40_RS23245 0.58 +1.4
798,203 + ABIE40_RS23245 0.67 -1.1
798,203 + ABIE40_RS23245 0.67 +0.6
798,204 - ABIE40_RS23245 0.67 -0.3
798,204 - ABIE40_RS23245 0.67 +0.2
798,204 - ABIE40_RS23245 0.67 -0.2
798,204 - ABIE40_RS23245 0.67 -0.8
798,227 + ABIE40_RS23245 0.71 +0.2
798,227 + ABIE40_RS23245 0.71 -0.4
798,228 - ABIE40_RS23245 0.71 +1.4
798,228 - ABIE40_RS23245 0.71 +1.1
798,228 - ABIE40_RS23245 0.71 +0.3
798,228 - ABIE40_RS23245 0.71 -0.6
798,277 + ABIE40_RS23245 0.79 +0.4
798,411 + -0.4
798,487 + -1.0
798,488 - +0.2
798,576 + -1.0
798,577 - -0.4
798,706 + ABIE40_RS23250 0.22 -2.3
798,706 + ABIE40_RS23250 0.22 -1.3
798,706 + ABIE40_RS23250 0.22 -1.5
798,706 + ABIE40_RS23250 0.22 -1.4
798,706 + ABIE40_RS23250 0.22 +0.4
798,706 + ABIE40_RS23250 0.22 -2.2
798,707 - ABIE40_RS23250 0.23 -2.4
798,707 - ABIE40_RS23250 0.23 -0.1
798,707 - ABIE40_RS23250 0.23 -1.4
798,708 + ABIE40_RS23250 0.23 -1.3
798,708 + ABIE40_RS23250 0.23 -1.1
798,708 + ABIE40_RS23250 0.23 -2.2
798,708 + ABIE40_RS23250 0.23 -2.3
798,708 + ABIE40_RS23250 0.23 -2.3
798,708 + ABIE40_RS23250 0.23 -1.1
798,708 + ABIE40_RS23250 0.23 -3.0
798,708 + ABIE40_RS23250 0.23 -1.6
798,708 + ABIE40_RS23250 0.23 -3.5
798,708 + ABIE40_RS23250 0.23 -2.8
798,709 - ABIE40_RS23250 0.23 -0.9
798,709 - ABIE40_RS23250 0.23 -0.4
798,709 - ABIE40_RS23250 0.23 -2.0
798,709 - ABIE40_RS23250 0.23 -1.1
798,709 - ABIE40_RS23250 0.23 -1.4
798,709 - ABIE40_RS23250 0.23 -1.1
798,709 - ABIE40_RS23250 0.23 -0.1
798,709 - ABIE40_RS23250 0.23 -0.8
798,769 + ABIE40_RS23250 0.29 +0.6
798,769 + ABIE40_RS23250 0.29 -2.4
798,769 + ABIE40_RS23250 0.29 -1.8
798,832 + ABIE40_RS23250 0.36 -2.0
798,832 + ABIE40_RS23250 0.36 -1.5
798,832 + ABIE40_RS23250 0.36 +1.0
798,833 - ABIE40_RS23250 0.37 +0.2
798,833 - ABIE40_RS23250 0.37 -1.1
798,833 - ABIE40_RS23250 0.37 -3.8
798,838 + ABIE40_RS23250 0.37 -0.4
798,838 + ABIE40_RS23250 0.37 -1.4
798,838 + ABIE40_RS23250 0.37 -2.4
798,838 + ABIE40_RS23250 0.37 +0.6
798,838 + ABIE40_RS23250 0.37 -3.0
798,839 - ABIE40_RS23250 0.37 -2.1
798,839 - ABIE40_RS23250 0.37 -1.7
798,898 - ABIE40_RS23250 0.44 -0.4
798,898 - ABIE40_RS23250 0.44 -3.0
799,015 + ABIE40_RS23250 0.57 -0.7
799,016 - ABIE40_RS23250 0.57 -2.7
799,027 + ABIE40_RS23250 0.58 -0.8
799,027 + ABIE40_RS23250 0.58 +0.6
799,028 - ABIE40_RS23250 0.58 -1.5
799,144 + ABIE40_RS23250 0.71 -2.5
799,404 + +2.2
799,425 + +0.6
799,426 - -0.0
799,456 - +0.1
799,499 + +1.1
799,499 + -1.3
799,499 + -0.1
799,499 + +1.1
799,499 + +0.3
799,500 - +0.3
799,500 - +0.2
799,609 + ABIE40_RS23255 0.14 -1.0
799,609 + ABIE40_RS23255 0.14 -0.5
799,609 + ABIE40_RS23255 0.14 +0.9
799,610 - ABIE40_RS23255 0.15 +0.7
799,610 - ABIE40_RS23255 0.15 -0.8
799,610 - ABIE40_RS23255 0.15 -0.5
799,610 - ABIE40_RS23255 0.15 +0.1
799,613 + ABIE40_RS23255 0.15 +0.4
799,614 - ABIE40_RS23255 0.15 +1.2
799,614 - ABIE40_RS23255 0.15 -0.3
799,614 - ABIE40_RS23255 0.15 +0.1
799,614 - ABIE40_RS23255 0.15 +0.4
799,874 + ABIE40_RS23255 0.42 +1.3
799,874 + ABIE40_RS23255 0.42 +0.1
799,991 + ABIE40_RS23255 0.54 +0.4
799,991 + ABIE40_RS23255 0.54 -0.8
799,992 - ABIE40_RS23255 0.54 -0.7
799,992 - ABIE40_RS23255 0.54 -0.7
799,992 - ABIE40_RS23255 0.54 +0.3
799,992 - ABIE40_RS23255 0.54 +0.2
800,317 + ABIE40_RS23255 0.87 +0.4
800,317 + ABIE40_RS23255 0.87 +0.2
800,317 + ABIE40_RS23255 0.87 +0.1
800,318 - ABIE40_RS23255 0.87 -1.0
800,318 - ABIE40_RS23255 0.87 +1.4
800,318 - ABIE40_RS23255 0.87 -0.9
800,318 - ABIE40_RS23255 0.87 +0.3
800,318 - ABIE40_RS23255 0.87 -0.1
800,318 - ABIE40_RS23255 0.87 -0.1
800,341 + ABIE40_RS23255 0.90 +0.2

Or see this region's nucleotide sequence