Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS00560

Experiment: D-Glucose-6-Phosphate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS00550 and ABIE40_RS00555 overlap by 4 nucleotidesABIE40_RS00555 and ABIE40_RS00560 overlap by 4 nucleotidesABIE40_RS00560 and ABIE40_RS00565 are separated by 3 nucleotidesABIE40_RS00565 and ABIE40_RS00570 overlap by 1 nucleotides ABIE40_RS00550: ABIE40_RS00550 - phosphonate C-P lyase system protein PhnK, at 114,349 to 115,125 _RS00550 ABIE40_RS00555: ABIE40_RS00555 - alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase PhnJ, at 115,122 to 116,000 _RS00555 ABIE40_RS00560: ABIE40_RS00560 - carbon-phosphorus lyase complex subunit PhnI, at 115,997 to 117,103 _RS00560 ABIE40_RS00565: ABIE40_RS00565 - phosphonate C-P lyase system protein PhnH, at 117,107 to 117,715 _RS00565 ABIE40_RS00570: ABIE40_RS00570 - phosphonate C-P lyase system protein PhnG, at 117,715 to 118,179 _RS00570 Position (kb) 115 116 117 118Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 115.051 kb on + strandat 115.051 kb on + strandat 115.051 kb on + strandat 115.052 kb on - strandat 115.052 kb on - strandat 115.079 kb on + strandat 115.080 kb on - strandat 115.196 kb on + strandat 115.252 kb on + strand, within ABIE40_RS00555at 115.252 kb on + strand, within ABIE40_RS00555at 115.252 kb on + strand, within ABIE40_RS00555at 115.253 kb on - strand, within ABIE40_RS00555at 115.253 kb on - strand, within ABIE40_RS00555at 115.253 kb on - strand, within ABIE40_RS00555at 115.327 kb on - strand, within ABIE40_RS00555at 115.344 kb on - strand, within ABIE40_RS00555at 115.346 kb on - strand, within ABIE40_RS00555at 115.360 kb on + strand, within ABIE40_RS00555at 115.360 kb on + strand, within ABIE40_RS00555at 115.360 kb on + strand, within ABIE40_RS00555at 115.361 kb on - strand, within ABIE40_RS00555at 115.361 kb on - strand, within ABIE40_RS00555at 115.459 kb on + strand, within ABIE40_RS00555at 115.459 kb on + strand, within ABIE40_RS00555at 115.460 kb on - strand, within ABIE40_RS00555at 115.483 kb on + strand, within ABIE40_RS00555at 115.489 kb on + strand, within ABIE40_RS00555at 115.489 kb on + strand, within ABIE40_RS00555at 115.489 kb on + strand, within ABIE40_RS00555at 115.489 kb on + strand, within ABIE40_RS00555at 115.489 kb on + strand, within ABIE40_RS00555at 115.489 kb on + strand, within ABIE40_RS00555at 115.489 kb on + strand, within ABIE40_RS00555at 115.489 kb on + strand, within ABIE40_RS00555at 115.489 kb on + strand, within ABIE40_RS00555at 115.489 kb on + strand, within ABIE40_RS00555at 115.489 kb on + strand, within ABIE40_RS00555at 115.489 kb on + strand, within ABIE40_RS00555at 115.489 kb on + strand, within ABIE40_RS00555at 115.489 kb on + strand, within ABIE40_RS00555at 115.489 kb on + strand, within ABIE40_RS00555at 115.490 kb on - strand, within ABIE40_RS00555at 115.490 kb on - strand, within ABIE40_RS00555at 115.490 kb on - strand, within ABIE40_RS00555at 115.490 kb on - strand, within ABIE40_RS00555at 115.490 kb on - strand, within ABIE40_RS00555at 115.490 kb on - strand, within ABIE40_RS00555at 115.490 kb on - strand, within ABIE40_RS00555at 115.490 kb on - strand, within ABIE40_RS00555at 115.490 kb on - strand, within ABIE40_RS00555at 115.490 kb on - strand, within ABIE40_RS00555at 115.490 kb on - strand, within ABIE40_RS00555at 115.490 kb on - strand, within ABIE40_RS00555at 115.490 kb on - strand, within ABIE40_RS00555at 115.490 kb on - strand, within ABIE40_RS00555at 115.490 kb on - strand, within ABIE40_RS00555at 115.490 kb on - strand, within ABIE40_RS00555at 115.528 kb on + strand, within ABIE40_RS00555at 115.529 kb on - strand, within ABIE40_RS00555at 115.552 kb on + strand, within ABIE40_RS00555at 115.553 kb on - strand, within ABIE40_RS00555at 115.553 kb on - strand, within ABIE40_RS00555at 115.709 kb on + strand, within ABIE40_RS00555at 115.709 kb on + strand, within ABIE40_RS00555at 115.710 kb on - strand, within ABIE40_RS00555at 115.710 kb on - strand, within ABIE40_RS00555at 115.710 kb on - strand, within ABIE40_RS00555at 115.710 kb on - strand, within ABIE40_RS00555at 115.969 kb on + strandat 115.970 kb on - strandat 115.981 kb on + strandat 115.981 kb on + strandat 115.981 kb on + strandat 115.982 kb on - strandat 116.097 kb on + strandat 116.097 kb on + strandat 116.097 kb on + strandat 116.097 kb on + strandat 116.098 kb on - strandat 116.098 kb on - strandat 116.281 kb on - strand, within ABIE40_RS00560at 116.290 kb on + strand, within ABIE40_RS00560at 116.731 kb on + strand, within ABIE40_RS00560at 116.731 kb on + strand, within ABIE40_RS00560at 116.731 kb on + strand, within ABIE40_RS00560at 116.731 kb on + strand, within ABIE40_RS00560at 116.731 kb on + strand, within ABIE40_RS00560at 116.731 kb on + strand, within ABIE40_RS00560at 116.731 kb on + strand, within ABIE40_RS00560at 116.731 kb on + strand, within ABIE40_RS00560at 116.731 kb on + strand, within ABIE40_RS00560at 116.732 kb on - strand, within ABIE40_RS00560at 116.732 kb on - strand, within ABIE40_RS00560at 116.732 kb on - strand, within ABIE40_RS00560at 116.732 kb on - strand, within ABIE40_RS00560at 116.732 kb on - strand, within ABIE40_RS00560at 116.732 kb on - strand, within ABIE40_RS00560at 116.732 kb on - strand, within ABIE40_RS00560at 116.732 kb on - strand, within ABIE40_RS00560at 116.732 kb on - strand, within ABIE40_RS00560at 116.733 kb on + strand, within ABIE40_RS00560at 116.733 kb on + strand, within ABIE40_RS00560at 116.733 kb on + strand, within ABIE40_RS00560at 116.734 kb on - strand, within ABIE40_RS00560at 116.778 kb on + strand, within ABIE40_RS00560at 116.778 kb on + strand, within ABIE40_RS00560at 116.778 kb on + strand, within ABIE40_RS00560at 116.778 kb on + strand, within ABIE40_RS00560at 116.778 kb on + strand, within ABIE40_RS00560at 116.778 kb on + strand, within ABIE40_RS00560at 116.778 kb on + strand, within ABIE40_RS00560at 116.778 kb on + strand, within ABIE40_RS00560at 116.778 kb on + strand, within ABIE40_RS00560at 116.779 kb on - strand, within ABIE40_RS00560at 116.779 kb on - strand, within ABIE40_RS00560at 116.779 kb on - strand, within ABIE40_RS00560at 116.791 kb on + strand, within ABIE40_RS00560at 117.099 kb on + strandat 117.099 kb on + strandat 117.099 kb on + strandat 117.099 kb on + strandat 117.099 kb on + strandat 117.099 kb on + strandat 117.099 kb on + strandat 117.099 kb on + strandat 117.099 kb on + strandat 117.099 kb on + strandat 117.099 kb on + strandat 117.099 kb on + strandat 117.099 kb on + strandat 117.099 kb on + strandat 117.099 kb on + strandat 117.099 kb on + strandat 117.099 kb on + strandat 117.099 kb on + strandat 117.100 kb on - strandat 117.100 kb on - strandat 117.100 kb on - strandat 117.100 kb on - strandat 117.100 kb on - strandat 117.100 kb on - strandat 117.100 kb on - strandat 117.100 kb on - strandat 117.100 kb on - strandat 117.100 kb on - strandat 117.100 kb on - strandat 117.100 kb on - strandat 117.100 kb on - strandat 117.100 kb on - strandat 117.275 kb on - strand, within ABIE40_RS00565at 117.354 kb on + strand, within ABIE40_RS00565at 117.460 kb on + strand, within ABIE40_RS00565at 117.516 kb on - strand, within ABIE40_RS00565at 117.516 kb on - strand, within ABIE40_RS00565at 117.697 kb on + strandat 117.697 kb on + strandat 117.698 kb on - strandat 117.698 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C)
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115,051 + +0.1
115,051 + -1.3
115,051 + -0.1
115,052 - -0.3
115,052 - +1.7
115,079 + +0.3
115,080 - -0.3
115,196 + +1.0
115,252 + ABIE40_RS00555 0.15 -0.4
115,252 + ABIE40_RS00555 0.15 +0.2
115,252 + ABIE40_RS00555 0.15 -1.1
115,253 - ABIE40_RS00555 0.15 -0.5
115,253 - ABIE40_RS00555 0.15 -0.1
115,253 - ABIE40_RS00555 0.15 -0.0
115,327 - ABIE40_RS00555 0.23 +0.5
115,344 - ABIE40_RS00555 0.25 +0.6
115,346 - ABIE40_RS00555 0.25 -0.4
115,360 + ABIE40_RS00555 0.27 -0.1
115,360 + ABIE40_RS00555 0.27 +0.6
115,360 + ABIE40_RS00555 0.27 -0.3
115,361 - ABIE40_RS00555 0.27 +0.1
115,361 - ABIE40_RS00555 0.27 +0.8
115,459 + ABIE40_RS00555 0.38 -1.1
115,459 + ABIE40_RS00555 0.38 +3.3
115,460 - ABIE40_RS00555 0.38 +2.7
115,483 + ABIE40_RS00555 0.41 +0.5
115,489 + ABIE40_RS00555 0.42 +0.7
115,489 + ABIE40_RS00555 0.42 -0.1
115,489 + ABIE40_RS00555 0.42 +0.4
115,489 + ABIE40_RS00555 0.42 +0.4
115,489 + ABIE40_RS00555 0.42 +0.1
115,489 + ABIE40_RS00555 0.42 +0.1
115,489 + ABIE40_RS00555 0.42 +0.3
115,489 + ABIE40_RS00555 0.42 -0.8
115,489 + ABIE40_RS00555 0.42 -0.8
115,489 + ABIE40_RS00555 0.42 -0.2
115,489 + ABIE40_RS00555 0.42 +0.2
115,489 + ABIE40_RS00555 0.42 -0.3
115,489 + ABIE40_RS00555 0.42 +1.0
115,489 + ABIE40_RS00555 0.42 +1.2
115,489 + ABIE40_RS00555 0.42 -0.8
115,490 - ABIE40_RS00555 0.42 +0.2
115,490 - ABIE40_RS00555 0.42 +0.3
115,490 - ABIE40_RS00555 0.42 -0.4
115,490 - ABIE40_RS00555 0.42 +0.9
115,490 - ABIE40_RS00555 0.42 -1.1
115,490 - ABIE40_RS00555 0.42 +0.2
115,490 - ABIE40_RS00555 0.42 +0.1
115,490 - ABIE40_RS00555 0.42 -0.7
115,490 - ABIE40_RS00555 0.42 -0.4
115,490 - ABIE40_RS00555 0.42 +0.3
115,490 - ABIE40_RS00555 0.42 -0.6
115,490 - ABIE40_RS00555 0.42 +0.1
115,490 - ABIE40_RS00555 0.42 +0.9
115,490 - ABIE40_RS00555 0.42 +0.1
115,490 - ABIE40_RS00555 0.42 -0.7
115,490 - ABIE40_RS00555 0.42 -0.5
115,528 + ABIE40_RS00555 0.46 -2.1
115,529 - ABIE40_RS00555 0.46 +0.3
115,552 + ABIE40_RS00555 0.49 -0.1
115,553 - ABIE40_RS00555 0.49 -0.6
115,553 - ABIE40_RS00555 0.49 -0.1
115,709 + ABIE40_RS00555 0.67 +0.0
115,709 + ABIE40_RS00555 0.67 -0.5
115,710 - ABIE40_RS00555 0.67 -0.6
115,710 - ABIE40_RS00555 0.67 +0.2
115,710 - ABIE40_RS00555 0.67 +0.7
115,710 - ABIE40_RS00555 0.67 -1.6
115,969 + -0.6
115,970 - +2.7
115,981 + -0.0
115,981 + +0.2
115,981 + +2.7
115,982 - -0.1
116,097 + +0.2
116,097 + +0.3
116,097 + -2.3
116,097 + +0.1
116,098 - -0.7
116,098 - -1.8
116,281 - ABIE40_RS00560 0.26 +0.3
116,290 + ABIE40_RS00560 0.26 -0.1
116,731 + ABIE40_RS00560 0.66 +0.7
116,731 + ABIE40_RS00560 0.66 -1.0
116,731 + ABIE40_RS00560 0.66 +0.2
116,731 + ABIE40_RS00560 0.66 +0.7
116,731 + ABIE40_RS00560 0.66 +0.6
116,731 + ABIE40_RS00560 0.66 +0.1
116,731 + ABIE40_RS00560 0.66 -0.6
116,731 + ABIE40_RS00560 0.66 -0.5
116,731 + ABIE40_RS00560 0.66 +0.7
116,732 - ABIE40_RS00560 0.66 -0.5
116,732 - ABIE40_RS00560 0.66 -0.4
116,732 - ABIE40_RS00560 0.66 +0.1
116,732 - ABIE40_RS00560 0.66 +0.1
116,732 - ABIE40_RS00560 0.66 -0.9
116,732 - ABIE40_RS00560 0.66 +0.5
116,732 - ABIE40_RS00560 0.66 -0.4
116,732 - ABIE40_RS00560 0.66 -0.8
116,732 - ABIE40_RS00560 0.66 +1.7
116,733 + ABIE40_RS00560 0.66 -0.9
116,733 + ABIE40_RS00560 0.66 +0.4
116,733 + ABIE40_RS00560 0.66 +0.7
116,734 - ABIE40_RS00560 0.67 -0.1
116,778 + ABIE40_RS00560 0.71 +0.2
116,778 + ABIE40_RS00560 0.71 -0.7
116,778 + ABIE40_RS00560 0.71 -1.6
116,778 + ABIE40_RS00560 0.71 +0.2
116,778 + ABIE40_RS00560 0.71 +0.7
116,778 + ABIE40_RS00560 0.71 -2.6
116,778 + ABIE40_RS00560 0.71 -1.1
116,778 + ABIE40_RS00560 0.71 +0.2
116,778 + ABIE40_RS00560 0.71 -1.8
116,779 - ABIE40_RS00560 0.71 -0.5
116,779 - ABIE40_RS00560 0.71 +0.1
116,779 - ABIE40_RS00560 0.71 -0.4
116,791 + ABIE40_RS00560 0.72 -0.6
117,099 + +0.2
117,099 + +0.0
117,099 + -0.7
117,099 + -0.6
117,099 + -0.1
117,099 + -0.5
117,099 + +0.0
117,099 + -3.4
117,099 + -0.5
117,099 + -0.6
117,099 + +1.4
117,099 + +0.2
117,099 + -0.2
117,099 + -0.5
117,099 + +0.6
117,099 + -0.7
117,099 + -0.7
117,099 + +0.2
117,100 - +0.2
117,100 - -0.4
117,100 - -0.1
117,100 - -0.3
117,100 - -0.5
117,100 - +0.2
117,100 - +0.3
117,100 - -0.1
117,100 - +0.2
117,100 - +0.4
117,100 - +0.0
117,100 - +0.3
117,100 - -0.7
117,100 - +0.9
117,275 - ABIE40_RS00565 0.28 -0.4
117,354 + ABIE40_RS00565 0.41 +0.7
117,460 + ABIE40_RS00565 0.58 +0.2
117,516 - ABIE40_RS00565 0.67 +0.5
117,516 - ABIE40_RS00565 0.67 +0.3
117,697 + +0.9
117,697 + +0.0
117,698 - -0.5
117,698 - +0.2

Or see this region's nucleotide sequence