Experiment: D-Glucose-6-Phosphate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS00125 and ABIE40_RS00130 overlap by 4 nucleotides ABIE40_RS00130 and ABIE40_RS00135 are separated by 159 nucleotides ABIE40_RS00135 and ABIE40_RS00140 are separated by 40 nucleotides
ABIE40_RS00125: ABIE40_RS00125 - mannitol dehydrogenase family protein, at 28,626 to 30,080
_RS00125
ABIE40_RS00130: ABIE40_RS00130 - glucuronate isomerase, at 30,077 to 31,492
_RS00130
ABIE40_RS00135: ABIE40_RS00135 - SlyX family protein, at 31,652 to 31,861
_RS00135
ABIE40_RS00140: ABIE40_RS00140 - NAD-dependent succinate-semialdehyde dehydrogenase, at 31,902 to 33,383
_RS00140
Position (kb) 30
31
32 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 29.144 kb on - strand, within ABIE40_RS00125 at 29.144 kb on - strand, within ABIE40_RS00125 at 29.157 kb on + strand, within ABIE40_RS00125 at 29.309 kb on + strand, within ABIE40_RS00125 at 29.310 kb on - strand, within ABIE40_RS00125 at 29.371 kb on + strand, within ABIE40_RS00125 at 29.372 kb on - strand, within ABIE40_RS00125 at 29.372 kb on - strand, within ABIE40_RS00125 at 29.465 kb on + strand, within ABIE40_RS00125 at 29.651 kb on + strand, within ABIE40_RS00125 at 29.651 kb on + strand, within ABIE40_RS00125 at 29.651 kb on + strand, within ABIE40_RS00125 at 29.651 kb on + strand, within ABIE40_RS00125 at 29.652 kb on - strand, within ABIE40_RS00125 at 29.652 kb on - strand, within ABIE40_RS00125 at 29.652 kb on - strand, within ABIE40_RS00125 at 29.652 kb on - strand, within ABIE40_RS00125 at 29.686 kb on + strand, within ABIE40_RS00125 at 29.686 kb on + strand, within ABIE40_RS00125 at 29.686 kb on + strand, within ABIE40_RS00125 at 29.686 kb on + strand, within ABIE40_RS00125 at 29.687 kb on - strand, within ABIE40_RS00125 at 29.842 kb on + strand, within ABIE40_RS00125 at 29.842 kb on + strand, within ABIE40_RS00125 at 29.842 kb on + strand, within ABIE40_RS00125 at 29.842 kb on + strand, within ABIE40_RS00125 at 29.842 kb on + strand, within ABIE40_RS00125 at 29.842 kb on + strand, within ABIE40_RS00125 at 29.843 kb on - strand, within ABIE40_RS00125 at 29.843 kb on - strand, within ABIE40_RS00125 at 29.907 kb on - strand, within ABIE40_RS00125 at 30.022 kb on + strand at 30.023 kb on - strand at 30.023 kb on - strand at 30.087 kb on + strand at 30.088 kb on - strand at 30.088 kb on - strand at 30.108 kb on + strand at 30.108 kb on + strand at 30.108 kb on + strand at 30.108 kb on + strand at 30.109 kb on - strand at 30.109 kb on - strand at 30.241 kb on + strand, within ABIE40_RS00130 at 30.241 kb on + strand, within ABIE40_RS00130 at 30.241 kb on + strand, within ABIE40_RS00130 at 30.242 kb on - strand, within ABIE40_RS00130 at 30.242 kb on - strand, within ABIE40_RS00130 at 30.242 kb on - strand, within ABIE40_RS00130 at 30.300 kb on + strand, within ABIE40_RS00130 at 30.396 kb on + strand, within ABIE40_RS00130 at 30.396 kb on + strand, within ABIE40_RS00130 at 30.396 kb on + strand, within ABIE40_RS00130 at 30.396 kb on + strand, within ABIE40_RS00130 at 30.396 kb on + strand, within ABIE40_RS00130 at 30.397 kb on - strand, within ABIE40_RS00130 at 30.397 kb on - strand, within ABIE40_RS00130 at 30.397 kb on - strand, within ABIE40_RS00130 at 30.450 kb on + strand, within ABIE40_RS00130 at 30.450 kb on + strand, within ABIE40_RS00130 at 30.451 kb on - strand, within ABIE40_RS00130 at 30.503 kb on - strand, within ABIE40_RS00130 at 30.573 kb on - strand, within ABIE40_RS00130 at 30.734 kb on + strand, within ABIE40_RS00130 at 30.735 kb on - strand, within ABIE40_RS00130 at 30.775 kb on - strand, within ABIE40_RS00130 at 30.906 kb on + strand, within ABIE40_RS00130 at 30.906 kb on + strand, within ABIE40_RS00130 at 30.906 kb on + strand, within ABIE40_RS00130 at 30.906 kb on + strand, within ABIE40_RS00130 at 30.906 kb on + strand, within ABIE40_RS00130 at 30.906 kb on + strand, within ABIE40_RS00130 at 30.906 kb on + strand, within ABIE40_RS00130 at 30.907 kb on - strand, within ABIE40_RS00130 at 30.907 kb on - strand, within ABIE40_RS00130 at 30.907 kb on - strand, within ABIE40_RS00130 at 30.907 kb on - strand, within ABIE40_RS00130 at 31.061 kb on - strand, within ABIE40_RS00130 at 31.063 kb on + strand, within ABIE40_RS00130 at 31.063 kb on + strand, within ABIE40_RS00130 at 31.063 kb on + strand, within ABIE40_RS00130 at 31.063 kb on + strand, within ABIE40_RS00130 at 31.064 kb on - strand, within ABIE40_RS00130 at 31.071 kb on + strand, within ABIE40_RS00130 at 31.071 kb on + strand, within ABIE40_RS00130 at 31.071 kb on + strand, within ABIE40_RS00130 at 31.071 kb on + strand, within ABIE40_RS00130 at 31.072 kb on - strand, within ABIE40_RS00130 at 31.072 kb on - strand, within ABIE40_RS00130 at 31.072 kb on - strand, within ABIE40_RS00130 at 31.072 kb on - strand, within ABIE40_RS00130 at 31.072 kb on - strand, within ABIE40_RS00130 at 31.073 kb on + strand, within ABIE40_RS00130 at 31.073 kb on + strand, within ABIE40_RS00130 at 31.073 kb on + strand, within ABIE40_RS00130 at 31.074 kb on - strand, within ABIE40_RS00130 at 31.074 kb on - strand, within ABIE40_RS00130 at 31.176 kb on + strand, within ABIE40_RS00130 at 31.177 kb on - strand, within ABIE40_RS00130 at 31.177 kb on - strand, within ABIE40_RS00130 at 31.177 kb on - strand, within ABIE40_RS00130 at 31.177 kb on - strand, within ABIE40_RS00130 at 31.177 kb on - strand, within ABIE40_RS00130 at 31.282 kb on + strand, within ABIE40_RS00130 at 31.283 kb on - strand, within ABIE40_RS00130 at 31.283 kb on - strand, within ABIE40_RS00130 at 31.283 kb on - strand, within ABIE40_RS00130 at 31.293 kb on + strand, within ABIE40_RS00130 at 31.293 kb on + strand, within ABIE40_RS00130 at 31.293 kb on + strand, within ABIE40_RS00130 at 31.293 kb on + strand, within ABIE40_RS00130 at 31.293 kb on + strand, within ABIE40_RS00130 at 31.293 kb on + strand, within ABIE40_RS00130 at 31.294 kb on - strand, within ABIE40_RS00130 at 31.294 kb on - strand, within ABIE40_RS00130 at 31.294 kb on - strand, within ABIE40_RS00130 at 31.366 kb on + strand at 31.410 kb on + strand at 31.410 kb on + strand at 31.411 kb on - strand at 31.484 kb on + strand at 31.484 kb on + strand at 31.484 kb on + strand at 31.485 kb on - strand at 31.485 kb on - strand at 31.485 kb on - strand at 31.514 kb on + strand at 31.521 kb on + strand at 31.521 kb on + strand at 31.522 kb on - strand at 31.522 kb on - strand at 31.579 kb on + strand at 31.580 kb on - strand at 31.584 kb on + strand at 31.584 kb on + strand at 31.585 kb on - strand at 31.586 kb on + strand at 31.651 kb on + strand at 31.651 kb on + strand at 31.652 kb on - strand at 31.652 kb on - strand at 31.652 kb on - strand at 31.652 kb on - strand at 31.857 kb on - strand at 31.857 kb on - strand at 31.924 kb on + strand at 31.924 kb on + strand at 31.924 kb on + strand at 31.924 kb on + strand at 31.925 kb on - strand at 31.925 kb on - strand at 31.939 kb on + strand at 31.940 kb on - strand at 32.030 kb on + strand at 32.051 kb on - strand, within ABIE40_RS00140 at 32.051 kb on - strand, within ABIE40_RS00140 at 32.104 kb on + strand, within ABIE40_RS00140 at 32.105 kb on - strand, within ABIE40_RS00140 at 32.105 kb on - strand, within ABIE40_RS00140 at 32.105 kb on - strand, within ABIE40_RS00140 at 32.105 kb on - strand, within ABIE40_RS00140 at 32.450 kb on - strand, within ABIE40_RS00140 at 32.467 kb on + strand, within ABIE40_RS00140 at 32.467 kb on + strand, within ABIE40_RS00140 at 32.467 kb on + strand, within ABIE40_RS00140 at 32.468 kb on - strand, within ABIE40_RS00140 at 32.468 kb on - strand, within ABIE40_RS00140 at 32.468 kb on - strand, within ABIE40_RS00140 at 32.468 kb on - strand, within ABIE40_RS00140
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C) remove 29,144 - ABIE40_RS00125 0.36 +0.1 29,144 - ABIE40_RS00125 0.36 +0.2 29,157 + ABIE40_RS00125 0.36 +0.7 29,309 + ABIE40_RS00125 0.47 +0.5 29,310 - ABIE40_RS00125 0.47 +0.9 29,371 + ABIE40_RS00125 0.51 +0.7 29,372 - ABIE40_RS00125 0.51 +0.6 29,372 - ABIE40_RS00125 0.51 -0.3 29,465 + ABIE40_RS00125 0.58 +0.3 29,651 + ABIE40_RS00125 0.70 +0.4 29,651 + ABIE40_RS00125 0.70 +1.0 29,651 + ABIE40_RS00125 0.70 -0.3 29,651 + ABIE40_RS00125 0.70 +0.6 29,652 - ABIE40_RS00125 0.71 -0.6 29,652 - ABIE40_RS00125 0.71 +1.1 29,652 - ABIE40_RS00125 0.71 +0.2 29,652 - ABIE40_RS00125 0.71 +0.1 29,686 + ABIE40_RS00125 0.73 +1.0 29,686 + ABIE40_RS00125 0.73 +1.1 29,686 + ABIE40_RS00125 0.73 -0.1 29,686 + ABIE40_RS00125 0.73 +2.7 29,687 - ABIE40_RS00125 0.73 +0.2 29,842 + ABIE40_RS00125 0.84 -1.1 29,842 + ABIE40_RS00125 0.84 +0.4 29,842 + ABIE40_RS00125 0.84 -0.1 29,842 + ABIE40_RS00125 0.84 +0.4 29,842 + ABIE40_RS00125 0.84 -0.6 29,842 + ABIE40_RS00125 0.84 -0.3 29,843 - ABIE40_RS00125 0.84 -0.0 29,843 - ABIE40_RS00125 0.84 +0.7 29,907 - ABIE40_RS00125 0.88 -1.1 30,022 + +1.3 30,023 - +0.1 30,023 - -2.7 30,087 + -3.2 30,088 - -4.1 30,088 - +0.2 30,108 + -1.6 30,108 + -4.3 30,108 + -5.7 30,108 + -4.1 30,109 - -2.4 30,109 - -2.2 30,241 + ABIE40_RS00130 0.12 -1.4 30,241 + ABIE40_RS00130 0.12 -5.3 30,241 + ABIE40_RS00130 0.12 -2.1 30,242 - ABIE40_RS00130 0.12 -1.3 30,242 - ABIE40_RS00130 0.12 -3.6 30,242 - ABIE40_RS00130 0.12 -2.4 30,300 + ABIE40_RS00130 0.16 -1.4 30,396 + ABIE40_RS00130 0.23 -2.6 30,396 + ABIE40_RS00130 0.23 -3.4 30,396 + ABIE40_RS00130 0.23 -3.1 30,396 + ABIE40_RS00130 0.23 -3.6 30,396 + ABIE40_RS00130 0.23 -1.3 30,397 - ABIE40_RS00130 0.23 -2.5 30,397 - ABIE40_RS00130 0.23 -1.4 30,397 - ABIE40_RS00130 0.23 -1.2 30,450 + ABIE40_RS00130 0.26 -3.5 30,450 + ABIE40_RS00130 0.26 -2.1 30,451 - ABIE40_RS00130 0.26 -3.2 30,503 - ABIE40_RS00130 0.30 -3.6 30,573 - ABIE40_RS00130 0.35 -3.7 30,734 + ABIE40_RS00130 0.46 -1.3 30,735 - ABIE40_RS00130 0.46 -2.2 30,775 - ABIE40_RS00130 0.49 -3.0 30,906 + ABIE40_RS00130 0.59 -2.6 30,906 + ABIE40_RS00130 0.59 -3.4 30,906 + ABIE40_RS00130 0.59 -4.2 30,906 + ABIE40_RS00130 0.59 -1.7 30,906 + ABIE40_RS00130 0.59 -2.0 30,906 + ABIE40_RS00130 0.59 -4.9 30,906 + ABIE40_RS00130 0.59 -4.3 30,907 - ABIE40_RS00130 0.59 -3.0 30,907 - ABIE40_RS00130 0.59 +0.2 30,907 - ABIE40_RS00130 0.59 -1.9 30,907 - ABIE40_RS00130 0.59 -1.7 31,061 - ABIE40_RS00130 0.69 -3.1 31,063 + ABIE40_RS00130 0.70 -1.5 31,063 + ABIE40_RS00130 0.70 -2.7 31,063 + ABIE40_RS00130 0.70 -1.3 31,063 + ABIE40_RS00130 0.70 -0.8 31,064 - ABIE40_RS00130 0.70 -3.4 31,071 + ABIE40_RS00130 0.70 -1.1 31,071 + ABIE40_RS00130 0.70 -2.7 31,071 + ABIE40_RS00130 0.70 -3.7 31,071 + ABIE40_RS00130 0.70 -3.3 31,072 - ABIE40_RS00130 0.70 -3.2 31,072 - ABIE40_RS00130 0.70 -1.8 31,072 - ABIE40_RS00130 0.70 -3.8 31,072 - ABIE40_RS00130 0.70 -4.4 31,072 - ABIE40_RS00130 0.70 -2.9 31,073 + ABIE40_RS00130 0.70 -5.3 31,073 + ABIE40_RS00130 0.70 -2.6 31,073 + ABIE40_RS00130 0.70 -3.0 31,074 - ABIE40_RS00130 0.70 -3.0 31,074 - ABIE40_RS00130 0.70 -1.8 31,176 + ABIE40_RS00130 0.78 -0.3 31,177 - ABIE40_RS00130 0.78 +1.7 31,177 - ABIE40_RS00130 0.78 -2.0 31,177 - ABIE40_RS00130 0.78 -1.1 31,177 - ABIE40_RS00130 0.78 -2.3 31,177 - ABIE40_RS00130 0.78 -3.4 31,282 + ABIE40_RS00130 0.85 -1.4 31,283 - ABIE40_RS00130 0.85 -1.4 31,283 - ABIE40_RS00130 0.85 -2.5 31,283 - ABIE40_RS00130 0.85 -0.3 31,293 + ABIE40_RS00130 0.86 -0.1 31,293 + ABIE40_RS00130 0.86 -3.4 31,293 + ABIE40_RS00130 0.86 -3.7 31,293 + ABIE40_RS00130 0.86 -2.3 31,293 + ABIE40_RS00130 0.86 -1.8 31,293 + ABIE40_RS00130 0.86 -2.9 31,294 - ABIE40_RS00130 0.86 -1.3 31,294 - ABIE40_RS00130 0.86 -3.3 31,294 - ABIE40_RS00130 0.86 -4.2 31,366 + -3.8 31,410 + -4.6 31,410 + -1.4 31,411 - -3.3 31,484 + -2.4 31,484 + -3.2 31,484 + -0.8 31,485 - -2.3 31,485 - -1.3 31,485 - -2.0 31,514 + -3.5 31,521 + -3.2 31,521 + -0.8 31,522 - -0.3 31,522 - +0.2 31,579 + +0.2 31,580 - +1.4 31,584 + -1.5 31,584 + +0.2 31,585 - -0.2 31,586 + -0.8 31,651 + -0.7 31,651 + +0.1 31,652 - +0.3 31,652 - +0.8 31,652 - +0.7 31,652 - +0.2 31,857 - -1.4 31,857 - -0.3 31,924 + +0.3 31,924 + -0.4 31,924 + +0.4 31,924 + -0.5 31,925 - +0.3 31,925 - -0.2 31,939 + -0.3 31,940 - +0.7 32,030 + -0.9 32,051 - ABIE40_RS00140 0.10 +0.7 32,051 - ABIE40_RS00140 0.10 +0.9 32,104 + ABIE40_RS00140 0.14 -0.6 32,105 - ABIE40_RS00140 0.14 +3.0 32,105 - ABIE40_RS00140 0.14 -0.0 32,105 - ABIE40_RS00140 0.14 +0.2 32,105 - ABIE40_RS00140 0.14 +0.1 32,450 - ABIE40_RS00140 0.37 +0.5 32,467 + ABIE40_RS00140 0.38 +0.9 32,467 + ABIE40_RS00140 0.38 +0.0 32,467 + ABIE40_RS00140 0.38 +1.1 32,468 - ABIE40_RS00140 0.38 +0.6 32,468 - ABIE40_RS00140 0.38 +0.5 32,468 - ABIE40_RS00140 0.38 +0.7 32,468 - ABIE40_RS00140 0.38 -1.1
Or see this region's nucleotide sequence