Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27730

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27720 and ABID97_RS27725 are separated by 32 nucleotidesABID97_RS27725 and ABID97_RS27730 are separated by 35 nucleotidesABID97_RS27730 and ABID97_RS27735 are separated by 26 nucleotidesABID97_RS27735 and ABID97_RS27740 overlap by 4 nucleotides ABID97_RS27720: ABID97_RS27720 - fumarate reductase/succinate dehydrogenase flavoprotein subunit, at 463,844 to 465,580 _RS27720 ABID97_RS27725: ABID97_RS27725 - ferredoxin family protein, at 465,613 to 465,846 _RS27725 ABID97_RS27730: ABID97_RS27730 - ABC transporter substrate-binding protein, at 465,882 to 467,306 _RS27730 ABID97_RS27735: ABID97_RS27735 - ABC transporter permease, at 467,333 to 468,130 _RS27735 ABID97_RS27740: ABID97_RS27740 - ABC transporter ATP-binding protein, at 468,127 to 468,975 _RS27740 Position (kb) 465 466 467 468Strain fitness (log2 ratio) -1 0 1at 464.990 kb on + strand, within ABID97_RS27720at 466.083 kb on + strand, within ABID97_RS27730at 466.696 kb on - strand, within ABID97_RS27730at 466.744 kb on - strand, within ABID97_RS27730at 466.951 kb on - strand, within ABID97_RS27730at 467.978 kb on + strand, within ABID97_RS27735at 467.979 kb on - strand, within ABID97_RS27735at 467.993 kb on + strand, within ABID97_RS27735

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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464,990 + ABID97_RS27720 0.66 -0.3
466,083 + ABID97_RS27730 0.14 -0.6
466,696 - ABID97_RS27730 0.57 -1.6
466,744 - ABID97_RS27730 0.60 -0.3
466,951 - ABID97_RS27730 0.75 +0.1
467,978 + ABID97_RS27735 0.81 +0.2
467,979 - ABID97_RS27735 0.81 -0.3
467,993 + ABID97_RS27735 0.83 -0.5

Or see this region's nucleotide sequence