Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27700

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27695 and ABID97_RS27700 are separated by 26 nucleotidesABID97_RS27700 and ABID97_RS27705 are separated by 233 nucleotides ABID97_RS27695: ABID97_RS27695 - phospholipase D-like domain-containing protein, at 457,881 to 459,149 _RS27695 ABID97_RS27700: ABID97_RS27700 - HAMP domain-containing sensor histidine kinase, at 459,176 to 460,300 _RS27700 ABID97_RS27705: ABID97_RS27705 - chromate efflux transporter, at 460,534 to 461,910 _RS27705 Position (kb) 459 460 461Strain fitness (log2 ratio) -1 0 1at 458.338 kb on - strand, within ABID97_RS27695at 458.338 kb on - strand, within ABID97_RS27695at 458.712 kb on + strand, within ABID97_RS27695at 459.682 kb on - strand, within ABID97_RS27700at 459.682 kb on - strand, within ABID97_RS27700at 460.300 kb on + strandat 460.356 kb on - strandat 460.783 kb on + strand, within ABID97_RS27705at 460.784 kb on - strand, within ABID97_RS27705at 460.883 kb on - strand, within ABID97_RS27705at 460.924 kb on + strand, within ABID97_RS27705at 460.924 kb on + strand, within ABID97_RS27705at 460.925 kb on - strand, within ABID97_RS27705

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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458,338 - ABID97_RS27695 0.36 +0.7
458,338 - ABID97_RS27695 0.36 -0.9
458,712 + ABID97_RS27695 0.65 -0.5
459,682 - ABID97_RS27700 0.45 -0.3
459,682 - ABID97_RS27700 0.45 +0.0
460,300 + +0.4
460,356 - +0.1
460,783 + ABID97_RS27705 0.18 +0.2
460,784 - ABID97_RS27705 0.18 -0.2
460,883 - ABID97_RS27705 0.25 -0.9
460,924 + ABID97_RS27705 0.28 +0.0
460,924 + ABID97_RS27705 0.28 +0.2
460,925 - ABID97_RS27705 0.28 +1.1

Or see this region's nucleotide sequence