Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27575

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27565 and ABID97_RS27570 overlap by 1 nucleotidesABID97_RS27570 and ABID97_RS27575 overlap by 4 nucleotidesABID97_RS27575 and ABID97_RS27580 overlap by 1 nucleotidesABID97_RS27580 and ABID97_RS27585 are separated by 31 nucleotides ABID97_RS27565: ABID97_RS27565 - ABC transporter ATP-binding protein, at 430,989 to 431,711 _RS27565 ABID97_RS27570: ABID97_RS27570 - ABC transporter ATP-binding protein, at 431,711 to 432,574 _RS27570 ABID97_RS27575: ABID97_RS27575 - high-affinity branched-chain amino acid ABC transporter permease LivM, at 432,571 to 433,890 _RS27575 ABID97_RS27580: ABID97_RS27580 - branched-chain amino acid ABC transporter permease LivH, at 433,890 to 434,804 _RS27580 ABID97_RS27585: ABID97_RS27585 - branched-chain amino acid ABC transporter substrate-binding protein, at 434,836 to 435,939 _RS27585 Position (kb) 432 433 434Strain fitness (log2 ratio) -1 0 1at 432.402 kb on + strand, within ABID97_RS27570at 432.403 kb on - strand, within ABID97_RS27570at 433.400 kb on + strand, within ABID97_RS27575at 433.400 kb on + strand, within ABID97_RS27575at 433.406 kb on + strand, within ABID97_RS27575at 433.422 kb on - strand, within ABID97_RS27575at 433.496 kb on + strand, within ABID97_RS27575at 433.496 kb on + strand, within ABID97_RS27575at 433.497 kb on - strand, within ABID97_RS27575at 433.497 kb on - strand, within ABID97_RS27575at 433.497 kb on - strand, within ABID97_RS27575at 433.981 kb on + strandat 434.678 kb on - strand, within ABID97_RS27580at 434.853 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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432,402 + ABID97_RS27570 0.80 -0.3
432,403 - ABID97_RS27570 0.80 +0.1
433,400 + ABID97_RS27575 0.63 +0.9
433,400 + ABID97_RS27575 0.63 +0.1
433,406 + ABID97_RS27575 0.63 +0.8
433,422 - ABID97_RS27575 0.64 +0.0
433,496 + ABID97_RS27575 0.70 -0.4
433,496 + ABID97_RS27575 0.70 -0.2
433,497 - ABID97_RS27575 0.70 -0.8
433,497 - ABID97_RS27575 0.70 -0.1
433,497 - ABID97_RS27575 0.70 +0.1
433,981 + -1.5
434,678 - ABID97_RS27580 0.86 +0.2
434,853 - -1.5

Or see this region's nucleotide sequence