Strain Fitness in Variovorax sp. OAS795 around ABID97_RS24235

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS24230 and ABID97_RS24235 overlap by 4 nucleotidesABID97_RS24235 and ABID97_RS24240 are separated by 1 nucleotides ABID97_RS24230: ABID97_RS24230 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 5,007,010 to 5,008,200 _RS24230 ABID97_RS24235: ABID97_RS24235 - WbqC family protein, at 5,008,197 to 5,008,940 _RS24235 ABID97_RS24240: ABID97_RS24240 - hypothetical protein, at 5,008,942 to 5,009,958 _RS24240 Position (kb) 5008 5009Strain fitness (log2 ratio) -2 -1 0 1 2at 5007.326 kb on - strand, within ABID97_RS24230at 5007.399 kb on + strand, within ABID97_RS24230at 5007.475 kb on + strand, within ABID97_RS24230at 5007.475 kb on + strand, within ABID97_RS24230at 5007.475 kb on + strand, within ABID97_RS24230at 5007.476 kb on - strand, within ABID97_RS24230at 5007.476 kb on - strand, within ABID97_RS24230at 5007.476 kb on - strand, within ABID97_RS24230at 5007.691 kb on + strand, within ABID97_RS24230at 5007.691 kb on + strand, within ABID97_RS24230at 5007.925 kb on + strand, within ABID97_RS24230at 5007.926 kb on - strand, within ABID97_RS24230at 5007.976 kb on + strand, within ABID97_RS24230at 5007.977 kb on - strand, within ABID97_RS24230at 5008.015 kb on + strand, within ABID97_RS24230at 5008.048 kb on + strand, within ABID97_RS24230at 5008.049 kb on - strand, within ABID97_RS24230at 5008.231 kb on - strandat 5008.305 kb on + strand, within ABID97_RS24235at 5008.365 kb on + strand, within ABID97_RS24235at 5008.365 kb on + strand, within ABID97_RS24235at 5008.365 kb on + strand, within ABID97_RS24235at 5008.365 kb on + strand, within ABID97_RS24235at 5008.365 kb on + strand, within ABID97_RS24235at 5008.365 kb on + strand, within ABID97_RS24235at 5008.366 kb on - strand, within ABID97_RS24235at 5008.369 kb on + strand, within ABID97_RS24235at 5008.369 kb on + strand, within ABID97_RS24235at 5008.369 kb on + strand, within ABID97_RS24235at 5008.370 kb on - strand, within ABID97_RS24235at 5008.370 kb on - strand, within ABID97_RS24235at 5008.474 kb on - strand, within ABID97_RS24235at 5008.474 kb on - strand, within ABID97_RS24235at 5008.746 kb on - strand, within ABID97_RS24235at 5008.806 kb on + strand, within ABID97_RS24235at 5008.807 kb on - strand, within ABID97_RS24235at 5008.807 kb on - strand, within ABID97_RS24235at 5009.049 kb on - strand, within ABID97_RS24240at 5009.049 kb on - strand, within ABID97_RS24240at 5009.125 kb on + strand, within ABID97_RS24240at 5009.125 kb on + strand, within ABID97_RS24240at 5009.125 kb on + strand, within ABID97_RS24240at 5009.125 kb on + strand, within ABID97_RS24240at 5009.125 kb on + strand, within ABID97_RS24240at 5009.125 kb on + strand, within ABID97_RS24240at 5009.182 kb on + strand, within ABID97_RS24240at 5009.253 kb on - strand, within ABID97_RS24240at 5009.258 kb on - strand, within ABID97_RS24240at 5009.496 kb on + strand, within ABID97_RS24240at 5009.497 kb on - strand, within ABID97_RS24240at 5009.675 kb on + strand, within ABID97_RS24240at 5009.675 kb on + strand, within ABID97_RS24240at 5009.676 kb on - strand, within ABID97_RS24240at 5009.794 kb on + strand, within ABID97_RS24240at 5009.794 kb on + strand, within ABID97_RS24240at 5009.794 kb on + strand, within ABID97_RS24240at 5009.794 kb on + strand, within ABID97_RS24240at 5009.795 kb on - strand, within ABID97_RS24240at 5009.795 kb on - strand, within ABID97_RS24240at 5009.795 kb on - strand, within ABID97_RS24240

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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5,007,326 - ABID97_RS24230 0.27 +1.5
5,007,399 + ABID97_RS24230 0.33 -0.9
5,007,475 + ABID97_RS24230 0.39 -0.4
5,007,475 + ABID97_RS24230 0.39 +0.4
5,007,475 + ABID97_RS24230 0.39 -2.1
5,007,476 - ABID97_RS24230 0.39 +1.1
5,007,476 - ABID97_RS24230 0.39 +0.5
5,007,476 - ABID97_RS24230 0.39 +1.1
5,007,691 + ABID97_RS24230 0.57 +0.4
5,007,691 + ABID97_RS24230 0.57 +0.4
5,007,925 + ABID97_RS24230 0.77 -0.2
5,007,926 - ABID97_RS24230 0.77 -0.7
5,007,976 + ABID97_RS24230 0.81 -0.0
5,007,977 - ABID97_RS24230 0.81 +1.3
5,008,015 + ABID97_RS24230 0.84 -0.0
5,008,048 + ABID97_RS24230 0.87 +0.2
5,008,049 - ABID97_RS24230 0.87 +0.2
5,008,231 - -0.7
5,008,305 + ABID97_RS24235 0.15 +0.9
5,008,365 + ABID97_RS24235 0.23 -0.5
5,008,365 + ABID97_RS24235 0.23 +0.9
5,008,365 + ABID97_RS24235 0.23 +0.6
5,008,365 + ABID97_RS24235 0.23 +0.3
5,008,365 + ABID97_RS24235 0.23 -0.2
5,008,365 + ABID97_RS24235 0.23 +1.9
5,008,366 - ABID97_RS24235 0.23 +0.1
5,008,369 + ABID97_RS24235 0.23 +0.3
5,008,369 + ABID97_RS24235 0.23 +0.6
5,008,369 + ABID97_RS24235 0.23 -0.6
5,008,370 - ABID97_RS24235 0.23 +0.0
5,008,370 - ABID97_RS24235 0.23 +0.3
5,008,474 - ABID97_RS24235 0.37 +0.3
5,008,474 - ABID97_RS24235 0.37 +0.1
5,008,746 - ABID97_RS24235 0.74 +0.6
5,008,806 + ABID97_RS24235 0.82 +0.4
5,008,807 - ABID97_RS24235 0.82 +0.1
5,008,807 - ABID97_RS24235 0.82 +0.2
5,009,049 - ABID97_RS24240 0.11 +0.1
5,009,049 - ABID97_RS24240 0.11 -0.5
5,009,125 + ABID97_RS24240 0.18 +0.5
5,009,125 + ABID97_RS24240 0.18 -0.3
5,009,125 + ABID97_RS24240 0.18 -0.1
5,009,125 + ABID97_RS24240 0.18 +0.2
5,009,125 + ABID97_RS24240 0.18 -1.5
5,009,125 + ABID97_RS24240 0.18 +0.5
5,009,182 + ABID97_RS24240 0.24 +0.2
5,009,253 - ABID97_RS24240 0.31 +0.9
5,009,258 - ABID97_RS24240 0.31 +0.4
5,009,496 + ABID97_RS24240 0.54 -0.3
5,009,497 - ABID97_RS24240 0.55 +0.0
5,009,675 + ABID97_RS24240 0.72 -0.2
5,009,675 + ABID97_RS24240 0.72 +0.7
5,009,676 - ABID97_RS24240 0.72 +0.5
5,009,794 + ABID97_RS24240 0.84 -0.1
5,009,794 + ABID97_RS24240 0.84 -0.2
5,009,794 + ABID97_RS24240 0.84 -0.5
5,009,794 + ABID97_RS24240 0.84 -0.5
5,009,795 - ABID97_RS24240 0.84 +0.4
5,009,795 - ABID97_RS24240 0.84 +0.3
5,009,795 - ABID97_RS24240 0.84 +0.1

Or see this region's nucleotide sequence