Strain Fitness in Variovorax sp. OAS795 around ABID97_RS22640

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS22635 and ABID97_RS22640 are separated by 121 nucleotidesABID97_RS22640 and ABID97_RS22645 overlap by 1 nucleotidesABID97_RS22645 and ABID97_RS22650 are separated by 160 nucleotides ABID97_RS22635: ABID97_RS22635 - bifunctional riboflavin kinase/FAD synthetase, at 4,687,107 to 4,688,144 _RS22635 ABID97_RS22640: ABID97_RS22640 - isoleucine--tRNA ligase, at 4,688,266 to 4,691,116 _RS22640 ABID97_RS22645: ABID97_RS22645 - signal peptidase II, at 4,691,116 to 4,691,628 _RS22645 ABID97_RS22650: ABID97_RS22650 - Na/Pi cotransporter family protein, at 4,691,789 to 4,693,450 _RS22650 Position (kb) 4688 4689 4690 4691 4692Strain fitness (log2 ratio) -1 0 1at 4688.142 kb on + strandat 4691.627 kb on - strandat 4691.730 kb on + strandat 4691.730 kb on + strandat 4691.731 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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4,688,142 + -0.5
4,691,627 - -0.4
4,691,730 + -0.1
4,691,730 + +0.2
4,691,731 - +0.1

Or see this region's nucleotide sequence