Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS21545 and ABID97_RS21550 are separated by 50 nucleotides ABID97_RS21550 and ABID97_RS21555 are separated by 250 nucleotides ABID97_RS21555 and ABID97_RS21560 are separated by 55 nucleotides
ABID97_RS21545: ABID97_RS21545 - L,D-transpeptidase, at 4,460,930 to 4,461,559
_RS21545
ABID97_RS21550: ABID97_RS21550 - hypothetical protein, at 4,461,610 to 4,461,927
_RS21550
ABID97_RS21555: ABID97_RS21555 - NAD-dependent succinate-semialdehyde dehydrogenase, at 4,462,178 to 4,463,656
_RS21555
ABID97_RS21560: ABID97_RS21560 - agmatinase, at 4,463,712 to 4,464,668
_RS21560
Position (kb) 4462
4463
4464 Strain fitness (log2 ratio) -1
0
1 at 4461.357 kb on + strand, within ABID97_RS21545 at 4461.559 kb on + strand at 4461.699 kb on - strand, within ABID97_RS21550 at 4461.699 kb on - strand, within ABID97_RS21550 at 4462.206 kb on + strand at 4462.206 kb on + strand at 4462.207 kb on - strand at 4462.207 kb on - strand at 4462.207 kb on - strand at 4462.222 kb on - strand at 4462.332 kb on + strand, within ABID97_RS21555 at 4462.381 kb on - strand, within ABID97_RS21555 at 4462.386 kb on + strand, within ABID97_RS21555 at 4462.386 kb on + strand, within ABID97_RS21555 at 4462.743 kb on + strand, within ABID97_RS21555 at 4462.743 kb on + strand, within ABID97_RS21555 at 4462.744 kb on - strand, within ABID97_RS21555 at 4463.651 kb on - strand at 4463.719 kb on + strand at 4463.956 kb on + strand, within ABID97_RS21560 at 4464.340 kb on + strand, within ABID97_RS21560 at 4464.380 kb on - strand, within ABID97_RS21560 at 4464.455 kb on - strand, within ABID97_RS21560 at 4464.455 kb on - strand, within ABID97_RS21560
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 4,461,357 + ABID97_RS21545 0.68 +0.2 4,461,559 + -1.0 4,461,699 - ABID97_RS21550 0.28 +0.1 4,461,699 - ABID97_RS21550 0.28 +0.2 4,462,206 + +0.1 4,462,206 + +0.1 4,462,207 - -0.6 4,462,207 - -0.2 4,462,207 - -0.2 4,462,222 - +0.1 4,462,332 + ABID97_RS21555 0.10 -0.3 4,462,381 - ABID97_RS21555 0.14 -1.3 4,462,386 + ABID97_RS21555 0.14 -1.3 4,462,386 + ABID97_RS21555 0.14 -0.5 4,462,743 + ABID97_RS21555 0.38 -0.3 4,462,743 + ABID97_RS21555 0.38 +0.0 4,462,744 - ABID97_RS21555 0.38 -0.9 4,463,651 - -0.1 4,463,719 + -1.2 4,463,956 + ABID97_RS21560 0.25 -0.8 4,464,340 + ABID97_RS21560 0.66 -0.1 4,464,380 - ABID97_RS21560 0.70 +0.6 4,464,455 - ABID97_RS21560 0.78 -0.6 4,464,455 - ABID97_RS21560 0.78 -0.5
Or see this region's nucleotide sequence