Strain Fitness in Variovorax sp. OAS795 around ABID97_RS20235

Experiment: Ethanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS20225 and ABID97_RS20230 are separated by 39 nucleotidesABID97_RS20230 and ABID97_RS20235 are separated by 5 nucleotidesABID97_RS20235 and ABID97_RS20240 are separated by 37 nucleotides ABID97_RS20225: ABID97_RS20225 - gamma carbonic anhydrase family protein, at 4,176,332 to 4,176,856 _RS20225 ABID97_RS20230: ABID97_RS20230 - ferritin-like domain-containing protein, at 4,176,896 to 4,177,711 _RS20230 ABID97_RS20235: ABID97_RS20235 - MaoC family dehydratase, at 4,177,717 to 4,178,193 _RS20235 ABID97_RS20240: ABID97_RS20240 - thiolase family protein, at 4,178,231 to 4,179,364 _RS20240 Position (kb) 4177 4178 4179Strain fitness (log2 ratio) -2 -1 0 1 2at 4176.892 kb on - strandat 4176.999 kb on + strand, within ABID97_RS20230at 4177.000 kb on - strand, within ABID97_RS20230at 4177.014 kb on + strand, within ABID97_RS20230at 4177.015 kb on - strand, within ABID97_RS20230at 4177.131 kb on + strand, within ABID97_RS20230at 4177.215 kb on - strand, within ABID97_RS20230at 4177.215 kb on - strand, within ABID97_RS20230at 4177.215 kb on - strand, within ABID97_RS20230at 4177.301 kb on + strand, within ABID97_RS20230at 4177.583 kb on + strand, within ABID97_RS20230at 4177.584 kb on - strand, within ABID97_RS20230at 4177.757 kb on + strandat 4177.757 kb on + strandat 4178.151 kb on - strandat 4178.939 kb on - strand, within ABID97_RS20240at 4178.939 kb on - strand, within ABID97_RS20240at 4178.940 kb on + strand, within ABID97_RS20240at 4178.940 kb on + strand, within ABID97_RS20240at 4178.940 kb on + strand, within ABID97_RS20240at 4178.940 kb on + strand, within ABID97_RS20240at 4178.940 kb on + strand, within ABID97_RS20240at 4178.941 kb on - strand, within ABID97_RS20240at 4178.941 kb on - strand, within ABID97_RS20240at 4178.941 kb on - strand, within ABID97_RS20240at 4178.941 kb on - strand, within ABID97_RS20240at 4178.941 kb on - strand, within ABID97_RS20240at 4178.941 kb on - strand, within ABID97_RS20240

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
remove
4,176,892 - +0.0
4,176,999 + ABID97_RS20230 0.13 +0.3
4,177,000 - ABID97_RS20230 0.13 -0.4
4,177,014 + ABID97_RS20230 0.14 +0.3
4,177,015 - ABID97_RS20230 0.15 -0.6
4,177,131 + ABID97_RS20230 0.29 -0.3
4,177,215 - ABID97_RS20230 0.39 +0.3
4,177,215 - ABID97_RS20230 0.39 -0.9
4,177,215 - ABID97_RS20230 0.39 +0.6
4,177,301 + ABID97_RS20230 0.50 +0.1
4,177,583 + ABID97_RS20230 0.84 -0.4
4,177,584 - ABID97_RS20230 0.84 +1.8
4,177,757 + -0.0
4,177,757 + +0.2
4,178,151 - -0.4
4,178,939 - ABID97_RS20240 0.62 -0.4
4,178,939 - ABID97_RS20240 0.62 -0.1
4,178,940 + ABID97_RS20240 0.63 +0.9
4,178,940 + ABID97_RS20240 0.63 -0.9
4,178,940 + ABID97_RS20240 0.63 -1.0
4,178,940 + ABID97_RS20240 0.63 +0.0
4,178,940 + ABID97_RS20240 0.63 -1.9
4,178,941 - ABID97_RS20240 0.63 -1.4
4,178,941 - ABID97_RS20240 0.63 +0.1
4,178,941 - ABID97_RS20240 0.63 +0.1
4,178,941 - ABID97_RS20240 0.63 -0.2
4,178,941 - ABID97_RS20240 0.63 -0.7
4,178,941 - ABID97_RS20240 0.63 +0.5

Or see this region's nucleotide sequence