Strain Fitness in Variovorax sp. OAS795 around ABID97_RS15885

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS15875 and ABID97_RS15880 overlap by 1 nucleotidesABID97_RS15880 and ABID97_RS15885 overlap by 4 nucleotidesABID97_RS15885 and ABID97_RS15890 overlap by 4 nucleotidesABID97_RS15890 and ABID97_RS15895 are separated by 48 nucleotides ABID97_RS15875: ABID97_RS15875 - paraquat-inducible protein A, at 3,290,866 to 3,291,498 _RS15875 ABID97_RS15880: ABID97_RS15880 - paraquat-inducible protein A, at 3,291,498 to 3,292,214 _RS15880 ABID97_RS15885: ABID97_RS15885 - MlaD family protein, at 3,292,211 to 3,293,854 _RS15885 ABID97_RS15890: ABID97_RS15890 - PqiC family protein, at 3,293,851 to 3,294,489 _RS15890 ABID97_RS15895: ABID97_RS15895 - MFS transporter, at 3,294,538 to 3,296,139 _RS15895 Position (kb) 3292 3293 3294Strain fitness (log2 ratio) -1 0 1at 3291.214 kb on + strand, within ABID97_RS15875at 3291.215 kb on - strand, within ABID97_RS15875at 3291.215 kb on - strand, within ABID97_RS15875at 3291.648 kb on + strand, within ABID97_RS15880at 3291.648 kb on + strand, within ABID97_RS15880at 3291.664 kb on - strand, within ABID97_RS15880at 3291.664 kb on - strand, within ABID97_RS15880at 3291.711 kb on + strand, within ABID97_RS15880at 3291.711 kb on + strand, within ABID97_RS15880at 3291.711 kb on + strand, within ABID97_RS15880at 3291.711 kb on + strand, within ABID97_RS15880at 3291.711 kb on + strand, within ABID97_RS15880at 3291.712 kb on - strand, within ABID97_RS15880at 3291.712 kb on - strand, within ABID97_RS15880at 3291.712 kb on - strand, within ABID97_RS15880at 3291.712 kb on - strand, within ABID97_RS15880at 3291.712 kb on - strand, within ABID97_RS15880at 3291.712 kb on - strand, within ABID97_RS15880at 3291.769 kb on - strand, within ABID97_RS15880at 3291.795 kb on + strand, within ABID97_RS15880at 3291.877 kb on + strand, within ABID97_RS15880at 3291.877 kb on + strand, within ABID97_RS15880at 3291.946 kb on - strand, within ABID97_RS15880at 3292.442 kb on + strand, within ABID97_RS15885at 3292.442 kb on + strand, within ABID97_RS15885at 3292.443 kb on - strand, within ABID97_RS15885at 3292.631 kb on + strand, within ABID97_RS15885at 3292.632 kb on - strand, within ABID97_RS15885at 3292.782 kb on - strand, within ABID97_RS15885at 3292.817 kb on + strand, within ABID97_RS15885at 3293.120 kb on + strand, within ABID97_RS15885at 3293.120 kb on + strand, within ABID97_RS15885at 3293.120 kb on + strand, within ABID97_RS15885at 3293.120 kb on + strand, within ABID97_RS15885at 3293.262 kb on - strand, within ABID97_RS15885at 3293.399 kb on + strand, within ABID97_RS15885at 3293.399 kb on + strand, within ABID97_RS15885at 3293.400 kb on - strand, within ABID97_RS15885at 3293.400 kb on - strand, within ABID97_RS15885at 3293.941 kb on + strand, within ABID97_RS15890at 3293.941 kb on + strand, within ABID97_RS15890at 3293.942 kb on - strand, within ABID97_RS15890at 3293.942 kb on - strand, within ABID97_RS15890at 3293.942 kb on - strand, within ABID97_RS15890at 3293.942 kb on - strand, within ABID97_RS15890at 3293.945 kb on - strand, within ABID97_RS15890at 3294.013 kb on + strand, within ABID97_RS15890at 3294.013 kb on + strand, within ABID97_RS15890at 3294.763 kb on + strand, within ABID97_RS15895at 3294.763 kb on + strand, within ABID97_RS15895at 3294.763 kb on + strand, within ABID97_RS15895at 3294.764 kb on - strand, within ABID97_RS15895at 3294.764 kb on - strand, within ABID97_RS15895

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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3,291,214 + ABID97_RS15875 0.55 +0.8
3,291,215 - ABID97_RS15875 0.55 -0.4
3,291,215 - ABID97_RS15875 0.55 -0.0
3,291,648 + ABID97_RS15880 0.21 -0.2
3,291,648 + ABID97_RS15880 0.21 -0.3
3,291,664 - ABID97_RS15880 0.23 +0.2
3,291,664 - ABID97_RS15880 0.23 -0.2
3,291,711 + ABID97_RS15880 0.30 -0.0
3,291,711 + ABID97_RS15880 0.30 -0.3
3,291,711 + ABID97_RS15880 0.30 -1.0
3,291,711 + ABID97_RS15880 0.30 -0.5
3,291,711 + ABID97_RS15880 0.30 +0.4
3,291,712 - ABID97_RS15880 0.30 +0.4
3,291,712 - ABID97_RS15880 0.30 +0.1
3,291,712 - ABID97_RS15880 0.30 -0.1
3,291,712 - ABID97_RS15880 0.30 -0.2
3,291,712 - ABID97_RS15880 0.30 -0.2
3,291,712 - ABID97_RS15880 0.30 +0.0
3,291,769 - ABID97_RS15880 0.38 -1.0
3,291,795 + ABID97_RS15880 0.41 -0.3
3,291,877 + ABID97_RS15880 0.53 -0.1
3,291,877 + ABID97_RS15880 0.53 -0.6
3,291,946 - ABID97_RS15880 0.62 +0.8
3,292,442 + ABID97_RS15885 0.14 -0.2
3,292,442 + ABID97_RS15885 0.14 -0.8
3,292,443 - ABID97_RS15885 0.14 +0.2
3,292,631 + ABID97_RS15885 0.26 -0.8
3,292,632 - ABID97_RS15885 0.26 +0.5
3,292,782 - ABID97_RS15885 0.35 -0.8
3,292,817 + ABID97_RS15885 0.37 -0.1
3,293,120 + ABID97_RS15885 0.55 -1.5
3,293,120 + ABID97_RS15885 0.55 -0.5
3,293,120 + ABID97_RS15885 0.55 +0.5
3,293,120 + ABID97_RS15885 0.55 -0.0
3,293,262 - ABID97_RS15885 0.64 +1.4
3,293,399 + ABID97_RS15885 0.72 -1.0
3,293,399 + ABID97_RS15885 0.72 -1.2
3,293,400 - ABID97_RS15885 0.72 -1.5
3,293,400 - ABID97_RS15885 0.72 -1.0
3,293,941 + ABID97_RS15890 0.14 -0.3
3,293,941 + ABID97_RS15890 0.14 -0.6
3,293,942 - ABID97_RS15890 0.14 +0.1
3,293,942 - ABID97_RS15890 0.14 +1.2
3,293,942 - ABID97_RS15890 0.14 +0.1
3,293,942 - ABID97_RS15890 0.14 +1.5
3,293,945 - ABID97_RS15890 0.15 -0.1
3,294,013 + ABID97_RS15890 0.25 -0.2
3,294,013 + ABID97_RS15890 0.25 +0.1
3,294,763 + ABID97_RS15895 0.14 -0.4
3,294,763 + ABID97_RS15895 0.14 -1.4
3,294,763 + ABID97_RS15895 0.14 +0.1
3,294,764 - ABID97_RS15895 0.14 +0.0
3,294,764 - ABID97_RS15895 0.14 -0.4

Or see this region's nucleotide sequence