Strain Fitness in Variovorax sp. OAS795 around ABID97_RS14960

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS14950 and ABID97_RS14955 are separated by 54 nucleotidesABID97_RS14955 and ABID97_RS14960 overlap by 4 nucleotidesABID97_RS14960 and ABID97_RS14965 are separated by 100 nucleotides ABID97_RS14950: ABID97_RS14950 - IclR family transcriptional regulator C-terminal domain-containing protein, at 3,107,120 to 3,107,890 _RS14950 ABID97_RS14955: ABID97_RS14955 - response regulator, at 3,107,945 to 3,108,604 _RS14955 ABID97_RS14960: ABID97_RS14960 - ATP-binding protein, at 3,108,601 to 3,109,932 _RS14960 ABID97_RS14965: ABID97_RS14965 - DegQ family serine endoprotease, at 3,110,033 to 3,111,502 _RS14965 Position (kb) 3108 3109 3110Strain fitness (log2 ratio) -1 0 1at 3107.700 kb on - strand, within ABID97_RS14950at 3108.018 kb on - strand, within ABID97_RS14955at 3108.077 kb on + strand, within ABID97_RS14955at 3108.077 kb on + strand, within ABID97_RS14955at 3108.078 kb on - strand, within ABID97_RS14955at 3108.237 kb on - strand, within ABID97_RS14955at 3108.323 kb on + strand, within ABID97_RS14955at 3108.324 kb on - strand, within ABID97_RS14955at 3108.479 kb on + strand, within ABID97_RS14955at 3108.479 kb on + strand, within ABID97_RS14955at 3108.480 kb on - strand, within ABID97_RS14955at 3108.480 kb on - strand, within ABID97_RS14955at 3108.584 kb on + strandat 3108.584 kb on + strandat 3108.585 kb on - strandat 3108.946 kb on + strand, within ABID97_RS14960at 3108.947 kb on - strand, within ABID97_RS14960at 3108.962 kb on + strand, within ABID97_RS14960at 3109.654 kb on + strand, within ABID97_RS14960at 3109.654 kb on + strand, within ABID97_RS14960at 3109.698 kb on - strand, within ABID97_RS14960at 3109.839 kb on + strandat 3109.969 kb on - strandat 3110.702 kb on + strand, within ABID97_RS14965at 3110.702 kb on + strand, within ABID97_RS14965at 3110.702 kb on + strand, within ABID97_RS14965at 3110.703 kb on - strand, within ABID97_RS14965at 3110.703 kb on - strand, within ABID97_RS14965at 3110.703 kb on - strand, within ABID97_RS14965at 3110.805 kb on - strand, within ABID97_RS14965

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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3,107,700 - ABID97_RS14950 0.75 +0.1
3,108,018 - ABID97_RS14955 0.11 -0.0
3,108,077 + ABID97_RS14955 0.20 +1.3
3,108,077 + ABID97_RS14955 0.20 +0.3
3,108,078 - ABID97_RS14955 0.20 -1.0
3,108,237 - ABID97_RS14955 0.44 -0.2
3,108,323 + ABID97_RS14955 0.57 -0.2
3,108,324 - ABID97_RS14955 0.57 +0.1
3,108,479 + ABID97_RS14955 0.81 -0.7
3,108,479 + ABID97_RS14955 0.81 -0.3
3,108,480 - ABID97_RS14955 0.81 +0.4
3,108,480 - ABID97_RS14955 0.81 +0.4
3,108,584 + +1.3
3,108,584 + -0.7
3,108,585 - +0.2
3,108,946 + ABID97_RS14960 0.26 +0.7
3,108,947 - ABID97_RS14960 0.26 +0.5
3,108,962 + ABID97_RS14960 0.27 +1.5
3,109,654 + ABID97_RS14960 0.79 +0.2
3,109,654 + ABID97_RS14960 0.79 -0.8
3,109,698 - ABID97_RS14960 0.82 +0.3
3,109,839 + +1.6
3,109,969 - +0.3
3,110,702 + ABID97_RS14965 0.46 +0.1
3,110,702 + ABID97_RS14965 0.46 -0.2
3,110,702 + ABID97_RS14965 0.46 -0.6
3,110,703 - ABID97_RS14965 0.46 +0.5
3,110,703 - ABID97_RS14965 0.46 -0.0
3,110,703 - ABID97_RS14965 0.46 +0.1
3,110,805 - ABID97_RS14965 0.53 +0.8

Or see this region's nucleotide sequence