Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13055

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13045 and ABID97_RS13050 overlap by 8 nucleotidesABID97_RS13050 and ABID97_RS13055 are separated by 5 nucleotidesABID97_RS13055 and ABID97_RS13060 are separated by 40 nucleotides ABID97_RS13045: ABID97_RS13045 - DUF4124 domain-containing protein, at 2,713,269 to 2,713,814 _RS13045 ABID97_RS13050: ABID97_RS13050 - DUF2845 domain-containing protein, at 2,713,807 to 2,714,205 _RS13050 ABID97_RS13055: ABID97_RS13055 - serine hydrolase domain-containing protein, at 2,714,211 to 2,716,067 _RS13055 ABID97_RS13060: ABID97_RS13060 - serine hydrolase domain-containing protein, at 2,716,108 to 2,717,292 _RS13060 Position (kb) 2714 2715 2716 2717Strain fitness (log2 ratio) -1 0 1at 2713.257 kb on + strandat 2713.327 kb on - strand, within ABID97_RS13045at 2713.327 kb on - strand, within ABID97_RS13045at 2713.369 kb on + strand, within ABID97_RS13045at 2713.581 kb on + strand, within ABID97_RS13045at 2713.581 kb on + strand, within ABID97_RS13045at 2713.600 kb on - strand, within ABID97_RS13045at 2713.629 kb on + strand, within ABID97_RS13045at 2713.849 kb on - strand, within ABID97_RS13050at 2714.051 kb on - strand, within ABID97_RS13050at 2714.117 kb on - strand, within ABID97_RS13050at 2714.117 kb on - strand, within ABID97_RS13050at 2714.392 kb on + strandat 2714.698 kb on + strand, within ABID97_RS13055at 2714.789 kb on - strand, within ABID97_RS13055at 2714.789 kb on - strand, within ABID97_RS13055at 2714.932 kb on + strand, within ABID97_RS13055at 2714.986 kb on + strand, within ABID97_RS13055at 2714.986 kb on + strand, within ABID97_RS13055at 2715.341 kb on - strand, within ABID97_RS13055at 2715.656 kb on - strand, within ABID97_RS13055at 2716.503 kb on - strand, within ABID97_RS13060at 2716.803 kb on - strand, within ABID97_RS13060

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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2,713,257 + -0.2
2,713,327 - ABID97_RS13045 0.11 +0.4
2,713,327 - ABID97_RS13045 0.11 -0.3
2,713,369 + ABID97_RS13045 0.18 +0.3
2,713,581 + ABID97_RS13045 0.57 -0.2
2,713,581 + ABID97_RS13045 0.57 -1.4
2,713,600 - ABID97_RS13045 0.61 -0.3
2,713,629 + ABID97_RS13045 0.66 -0.3
2,713,849 - ABID97_RS13050 0.11 -0.7
2,714,051 - ABID97_RS13050 0.61 -0.2
2,714,117 - ABID97_RS13050 0.78 -0.3
2,714,117 - ABID97_RS13050 0.78 -1.0
2,714,392 + -1.0
2,714,698 + ABID97_RS13055 0.26 -0.4
2,714,789 - ABID97_RS13055 0.31 +0.5
2,714,789 - ABID97_RS13055 0.31 +1.4
2,714,932 + ABID97_RS13055 0.39 -0.7
2,714,986 + ABID97_RS13055 0.42 -0.7
2,714,986 + ABID97_RS13055 0.42 +0.4
2,715,341 - ABID97_RS13055 0.61 -1.0
2,715,656 - ABID97_RS13055 0.78 +1.1
2,716,503 - ABID97_RS13060 0.33 -0.5
2,716,803 - ABID97_RS13060 0.59 -0.4

Or see this region's nucleotide sequence