Strain Fitness in Variovorax sp. OAS795 around ABID97_RS05050

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS05045 and ABID97_RS05050 overlap by 25 nucleotidesABID97_RS05050 and ABID97_RS05055 overlap by 4 nucleotidesABID97_RS05055 and ABID97_RS05060 are separated by 184 nucleotides ABID97_RS05045: ABID97_RS05045 - type VI secretion system baseplate subunit TssF, at 1,061,923 to 1,063,815 _RS05045 ABID97_RS05050: ABID97_RS05050 - type VI secretion system baseplate subunit TssG, at 1,063,791 to 1,064,870 _RS05050 ABID97_RS05055: ABID97_RS05055 - tetratricopeptide repeat protein, at 1,064,867 to 1,065,343 _RS05055 ABID97_RS05060: ABID97_RS05060 - methyltransferase domain-containing protein, at 1,065,528 to 1,066,202 _RS05060 Position (kb) 1063 1064 1065Strain fitness (log2 ratio) -1 0 1 2at 1063.195 kb on + strand, within ABID97_RS05045at 1063.442 kb on - strand, within ABID97_RS05045at 1063.873 kb on - strandat 1064.064 kb on + strand, within ABID97_RS05050at 1064.193 kb on + strand, within ABID97_RS05050at 1064.193 kb on + strand, within ABID97_RS05050at 1064.812 kb on + strandat 1064.813 kb on - strandat 1065.020 kb on + strand, within ABID97_RS05055at 1065.021 kb on - strand, within ABID97_RS05055at 1065.613 kb on - strand, within ABID97_RS05060at 1065.693 kb on + strand, within ABID97_RS05060at 1065.693 kb on + strand, within ABID97_RS05060at 1065.693 kb on + strand, within ABID97_RS05060at 1065.693 kb on + strand, within ABID97_RS05060at 1065.694 kb on - strand, within ABID97_RS05060at 1065.694 kb on - strand, within ABID97_RS05060at 1065.694 kb on - strand, within ABID97_RS05060at 1065.694 kb on - strand, within ABID97_RS05060at 1065.694 kb on - strand, within ABID97_RS05060

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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1,063,195 + ABID97_RS05045 0.67 -1.7
1,063,442 - ABID97_RS05045 0.80 +0.4
1,063,873 - +0.5
1,064,064 + ABID97_RS05050 0.25 +0.4
1,064,193 + ABID97_RS05050 0.37 -0.2
1,064,193 + ABID97_RS05050 0.37 +0.4
1,064,812 + +0.2
1,064,813 - -0.1
1,065,020 + ABID97_RS05055 0.32 +0.3
1,065,021 - ABID97_RS05055 0.32 +2.7
1,065,613 - ABID97_RS05060 0.13 +0.0
1,065,693 + ABID97_RS05060 0.24 -1.4
1,065,693 + ABID97_RS05060 0.24 +0.8
1,065,693 + ABID97_RS05060 0.24 -0.6
1,065,693 + ABID97_RS05060 0.24 +0.0
1,065,694 - ABID97_RS05060 0.25 +0.7
1,065,694 - ABID97_RS05060 0.25 -1.5
1,065,694 - ABID97_RS05060 0.25 -0.2
1,065,694 - ABID97_RS05060 0.25 -0.1
1,065,694 - ABID97_RS05060 0.25 -0.8

Or see this region's nucleotide sequence