Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00865 and ABID97_RS00870 overlap by 4 nucleotides ABID97_RS00870 and ABID97_RS00875 are separated by 167 nucleotides ABID97_RS00875 and ABID97_RS00880 are separated by 31 nucleotides
ABID97_RS00865: ABID97_RS00865 - glutathione-disulfide reductase, at 174,029 to 175,387
_RS00865
ABID97_RS00870: ABID97_RS00870 - 2-dehydropantoate 2-reductase, at 175,384 to 176,292
_RS00870
ABID97_RS00875: ABID97_RS00875 - phytanoyl-CoA dioxygenase family protein, at 176,460 to 177,212
_RS00875
ABID97_RS00880: ABID97_RS00880 - AMP nucleosidase, at 177,244 to 178,761
_RS00880
Position (kb) 175
176
177 Strain fitness (log2 ratio) -1
0
1 at 174.560 kb on + strand, within ABID97_RS00865 at 174.560 kb on + strand, within ABID97_RS00865 at 174.561 kb on - strand, within ABID97_RS00865 at 174.923 kb on + strand, within ABID97_RS00865 at 174.924 kb on - strand, within ABID97_RS00865 at 174.924 kb on - strand, within ABID97_RS00865 at 175.553 kb on + strand, within ABID97_RS00870 at 175.553 kb on + strand, within ABID97_RS00870 at 175.554 kb on - strand, within ABID97_RS00870 at 175.919 kb on + strand, within ABID97_RS00870 at 175.919 kb on + strand, within ABID97_RS00870 at 176.249 kb on + strand at 176.253 kb on - strand at 176.384 kb on - strand at 176.496 kb on + strand at 176.497 kb on - strand at 176.865 kb on + strand, within ABID97_RS00875 at 176.865 kb on + strand, within ABID97_RS00875 at 176.865 kb on + strand, within ABID97_RS00875 at 176.866 kb on - strand, within ABID97_RS00875 at 176.866 kb on - strand, within ABID97_RS00875 at 176.866 kb on - strand, within ABID97_RS00875 at 176.866 kb on - strand, within ABID97_RS00875 at 177.250 kb on + strand at 177.250 kb on + strand at 177.250 kb on + strand at 177.250 kb on + strand at 177.250 kb on + strand at 177.251 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 174,560 + ABID97_RS00865 0.39 +1.4 174,560 + ABID97_RS00865 0.39 +0.5 174,561 - ABID97_RS00865 0.39 -0.2 174,923 + ABID97_RS00865 0.66 +0.1 174,924 - ABID97_RS00865 0.66 +0.2 174,924 - ABID97_RS00865 0.66 -0.3 175,553 + ABID97_RS00870 0.19 -0.9 175,553 + ABID97_RS00870 0.19 -0.7 175,554 - ABID97_RS00870 0.19 -0.5 175,919 + ABID97_RS00870 0.59 +0.1 175,919 + ABID97_RS00870 0.59 -0.2 176,249 + -0.7 176,253 - +0.1 176,384 - -0.2 176,496 + -0.2 176,497 - +0.0 176,865 + ABID97_RS00875 0.54 -0.1 176,865 + ABID97_RS00875 0.54 -0.2 176,865 + ABID97_RS00875 0.54 +0.7 176,866 - ABID97_RS00875 0.54 +1.2 176,866 - ABID97_RS00875 0.54 +1.1 176,866 - ABID97_RS00875 0.54 -0.7 176,866 - ABID97_RS00875 0.54 -0.4 177,250 + -0.0 177,250 + +0.1 177,250 + -0.3 177,250 + +0.1 177,250 + +1.1 177,251 - -0.1
Or see this region's nucleotide sequence