Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_584

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_581 and PfGW456L13_582 overlap by 23 nucleotidesPfGW456L13_582 and PfGW456L13_583 are separated by 71 nucleotidesPfGW456L13_583 and PfGW456L13_584 are separated by 437 nucleotidesPfGW456L13_584 and PfGW456L13_585 are separated by 10 nucleotides PfGW456L13_581 - hypothetical protein, at 674,425 to 674,538 _581 PfGW456L13_582 - probable exported protein YPO0432, at 674,516 to 674,680 _582 PfGW456L13_583 - FIG00956005: hypothetical protein, at 674,752 to 675,039 _583 PfGW456L13_584 - alginate biosynthesis transcriptional regulatory protein AlgB, at 675,477 to 676,823 _584 PfGW456L13_585 - Sensory box histidine kinase, at 676,834 to 678,624 _585 Position (kb) 675 676 677Strain fitness (log2 ratio) -2 -1 0 1 2 3at 674.514 kb on + strand, within PfGW456L13_581at 674.515 kb on - strand, within PfGW456L13_581at 674.615 kb on - strand, within PfGW456L13_582at 674.630 kb on + strand, within PfGW456L13_582at 674.693 kb on + strandat 674.693 kb on + strandat 674.754 kb on - strandat 674.779 kb on + strandat 674.779 kb on + strandat 674.779 kb on + strandat 674.779 kb on + strandat 674.779 kb on + strandat 674.779 kb on + strandat 674.779 kb on + strandat 674.779 kb on + strandat 674.780 kb on - strandat 674.780 kb on - strandat 674.780 kb on - strandat 674.780 kb on - strandat 674.780 kb on - strandat 674.780 kb on - strandat 674.780 kb on - strandat 674.780 kb on - strandat 674.780 kb on - strandat 674.780 kb on - strandat 675.300 kb on - strandat 675.300 kb on - strandat 675.335 kb on + strandat 675.335 kb on + strandat 675.335 kb on + strandat 675.336 kb on - strandat 675.336 kb on - strandat 675.336 kb on - strandat 675.365 kb on + strandat 675.365 kb on + strandat 675.365 kb on + strandat 675.365 kb on + strandat 675.365 kb on + strandat 675.366 kb on - strandat 675.366 kb on - strandat 675.366 kb on - strandat 675.366 kb on - strandat 675.366 kb on - strandat 675.366 kb on - strandat 675.366 kb on - strandat 675.366 kb on - strandat 675.381 kb on + strandat 675.381 kb on + strandat 675.382 kb on - strandat 675.382 kb on - strandat 675.443 kb on + strandat 675.443 kb on + strandat 675.444 kb on - strandat 675.448 kb on - strandat 675.461 kb on + strandat 675.462 kb on - strandat 675.470 kb on + strandat 675.542 kb on + strandat 675.542 kb on + strandat 675.542 kb on + strandat 675.542 kb on + strandat 675.543 kb on - strandat 675.573 kb on + strandat 675.573 kb on + strandat 675.702 kb on - strand, within PfGW456L13_584at 675.792 kb on + strand, within PfGW456L13_584at 675.792 kb on + strand, within PfGW456L13_584at 675.793 kb on - strand, within PfGW456L13_584at 675.793 kb on - strand, within PfGW456L13_584at 675.793 kb on - strand, within PfGW456L13_584at 675.895 kb on + strand, within PfGW456L13_584at 675.895 kb on + strand, within PfGW456L13_584at 675.896 kb on - strand, within PfGW456L13_584at 675.896 kb on - strand, within PfGW456L13_584at 675.896 kb on - strand, within PfGW456L13_584at 675.896 kb on - strand, within PfGW456L13_584at 675.987 kb on - strand, within PfGW456L13_584at 676.278 kb on + strand, within PfGW456L13_584at 676.278 kb on + strand, within PfGW456L13_584at 676.393 kb on - strand, within PfGW456L13_584at 676.393 kb on - strand, within PfGW456L13_584at 676.410 kb on - strand, within PfGW456L13_584at 676.410 kb on - strand, within PfGW456L13_584at 676.410 kb on - strand, within PfGW456L13_584at 676.410 kb on - strand, within PfGW456L13_584at 676.410 kb on - strand, within PfGW456L13_584at 676.410 kb on - strand, within PfGW456L13_584at 676.448 kb on + strand, within PfGW456L13_584at 676.448 kb on + strand, within PfGW456L13_584at 676.448 kb on + strand, within PfGW456L13_584at 676.448 kb on + strand, within PfGW456L13_584at 676.449 kb on - strand, within PfGW456L13_584at 676.494 kb on + strand, within PfGW456L13_584at 676.494 kb on + strand, within PfGW456L13_584at 676.643 kb on + strand, within PfGW456L13_584at 676.812 kb on + strandat 676.812 kb on + strandat 676.812 kb on + strandat 676.813 kb on - strandat 676.813 kb on - strandat 676.971 kb on + strandat 676.971 kb on + strandat 676.972 kb on - strandat 677.086 kb on + strand, within PfGW456L13_585at 677.087 kb on - strand, within PfGW456L13_585at 677.087 kb on - strand, within PfGW456L13_585at 677.170 kb on + strand, within PfGW456L13_585at 677.170 kb on + strand, within PfGW456L13_585at 677.170 kb on + strand, within PfGW456L13_585at 677.171 kb on - strand, within PfGW456L13_585at 677.191 kb on + strand, within PfGW456L13_585at 677.191 kb on + strand, within PfGW456L13_585at 677.191 kb on + strand, within PfGW456L13_585at 677.192 kb on - strand, within PfGW456L13_585at 677.192 kb on - strand, within PfGW456L13_585at 677.192 kb on - strand, within PfGW456L13_585at 677.192 kb on - strand, within PfGW456L13_585at 677.192 kb on - strand, within PfGW456L13_585at 677.192 kb on - strand, within PfGW456L13_585at 677.262 kb on - strand, within PfGW456L13_585at 677.301 kb on + strand, within PfGW456L13_585at 677.302 kb on - strand, within PfGW456L13_585at 677.302 kb on - strand, within PfGW456L13_585at 677.585 kb on + strand, within PfGW456L13_585at 677.585 kb on + strand, within PfGW456L13_585at 677.585 kb on + strand, within PfGW456L13_585at 677.585 kb on + strandat 677.585 kb on + strand, within PfGW456L13_585at 677.585 kb on + strand, within PfGW456L13_585at 677.585 kb on + strand, within PfGW456L13_585at 677.585 kb on + strand, within PfGW456L13_585at 677.585 kb on + strand, within PfGW456L13_585at 677.585 kb on + strand, within PfGW456L13_585at 677.585 kb on + strand, within PfGW456L13_585at 677.585 kb on + strand, within PfGW456L13_585at 677.586 kb on - strand, within PfGW456L13_585at 677.586 kb on - strand, within PfGW456L13_585at 677.586 kb on - strand, within PfGW456L13_585at 677.586 kb on - strand, within PfGW456L13_585at 677.586 kb on - strand, within PfGW456L13_585at 677.586 kb on - strand, within PfGW456L13_585at 677.586 kb on - strand, within PfGW456L13_585at 677.586 kb on - strand, within PfGW456L13_585at 677.586 kb on - strand, within PfGW456L13_585at 677.586 kb on - strand, within PfGW456L13_585at 677.586 kb on - strand, within PfGW456L13_585at 677.586 kb on - strand, within PfGW456L13_585at 677.586 kb on - strand, within PfGW456L13_585at 677.586 kb on - strand, within PfGW456L13_585at 677.685 kb on + strand, within PfGW456L13_585at 677.745 kb on + strand, within PfGW456L13_585

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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674,514 + PfGW456L13_581 0.78 -1.8
674,515 - PfGW456L13_581 0.79 +0.3
674,615 - PfGW456L13_582 0.60 +1.4
674,630 + PfGW456L13_582 0.69 -0.8
674,693 + -1.2
674,693 + -0.1
674,754 - +1.5
674,779 + -0.3
674,779 + -1.6
674,779 + -0.9
674,779 + -1.0
674,779 + -1.8
674,779 + -1.9
674,779 + -1.5
674,779 + -0.4
674,780 - -0.2
674,780 - +0.7
674,780 - -0.3
674,780 - +1.1
674,780 - +0.9
674,780 - +1.1
674,780 - +0.1
674,780 - +0.6
674,780 - +1.1
674,780 - +0.1
675,300 - +0.3
675,300 - +0.9
675,335 + -0.7
675,335 + -0.8
675,335 + -1.2
675,336 - +0.9
675,336 - +0.2
675,336 - +0.6
675,365 + -0.6
675,365 + -0.6
675,365 + -2.2
675,365 + +0.3
675,365 + -0.5
675,366 - +0.7
675,366 - +1.1
675,366 - -0.1
675,366 - +0.9
675,366 - +1.2
675,366 - +1.1
675,366 - +0.7
675,366 - +0.3
675,381 + -0.8
675,381 + +0.6
675,382 - +0.1
675,382 - +0.6
675,443 + -0.9
675,443 + -1.0
675,444 - -0.4
675,448 - +1.1
675,461 + -0.1
675,462 - -0.3
675,470 + -2.1
675,542 + -2.4
675,542 + -1.1
675,542 + +1.3
675,542 + +0.1
675,543 - +2.0
675,573 + -2.6
675,573 + -0.0
675,702 - PfGW456L13_584 0.17 +0.9
675,792 + PfGW456L13_584 0.23 -0.4
675,792 + PfGW456L13_584 0.23 -1.5
675,793 - PfGW456L13_584 0.23 +0.8
675,793 - PfGW456L13_584 0.23 +0.8
675,793 - PfGW456L13_584 0.23 +0.8
675,895 + PfGW456L13_584 0.31 +0.2
675,895 + PfGW456L13_584 0.31 -1.4
675,896 - PfGW456L13_584 0.31 +1.5
675,896 - PfGW456L13_584 0.31 +1.3
675,896 - PfGW456L13_584 0.31 +1.0
675,896 - PfGW456L13_584 0.31 +0.6
675,987 - PfGW456L13_584 0.38 +1.3
676,278 + PfGW456L13_584 0.59 +0.4
676,278 + PfGW456L13_584 0.59 -0.5
676,393 - PfGW456L13_584 0.68 +0.5
676,393 - PfGW456L13_584 0.68 +1.3
676,410 - PfGW456L13_584 0.69 +1.0
676,410 - PfGW456L13_584 0.69 +0.8
676,410 - PfGW456L13_584 0.69 +0.4
676,410 - PfGW456L13_584 0.69 +1.8
676,410 - PfGW456L13_584 0.69 +1.4
676,410 - PfGW456L13_584 0.69 +0.4
676,448 + PfGW456L13_584 0.72 -0.7
676,448 + PfGW456L13_584 0.72 -1.0
676,448 + PfGW456L13_584 0.72 +0.1
676,448 + PfGW456L13_584 0.72 -2.4
676,449 - PfGW456L13_584 0.72 +0.2
676,494 + PfGW456L13_584 0.76 -0.8
676,494 + PfGW456L13_584 0.76 +0.1
676,643 + PfGW456L13_584 0.87 -1.4
676,812 + -2.0
676,812 + -0.7
676,812 + -1.2
676,813 - -1.6
676,813 - -0.0
676,971 + -0.3
676,971 + -1.7
676,972 - -2.7
677,086 + PfGW456L13_585 0.14 -0.3
677,087 - PfGW456L13_585 0.14 +0.1
677,087 - PfGW456L13_585 0.14 +0.1
677,170 + PfGW456L13_585 0.19 -1.1
677,170 + PfGW456L13_585 0.19 -1.9
677,170 + PfGW456L13_585 0.19 +1.0
677,171 - PfGW456L13_585 0.19 +1.1
677,191 + PfGW456L13_585 0.20 -0.6
677,191 + PfGW456L13_585 0.20 +0.8
677,191 + PfGW456L13_585 0.20 +0.2
677,192 - PfGW456L13_585 0.20 +0.5
677,192 - PfGW456L13_585 0.20 +0.4
677,192 - PfGW456L13_585 0.20 +1.6
677,192 - PfGW456L13_585 0.20 +1.0
677,192 - PfGW456L13_585 0.20 +1.3
677,192 - PfGW456L13_585 0.20 +0.5
677,262 - PfGW456L13_585 0.24 -0.2
677,301 + PfGW456L13_585 0.26 +1.5
677,302 - PfGW456L13_585 0.26 +0.1
677,302 - PfGW456L13_585 0.26 +0.8
677,585 + PfGW456L13_585 0.42 -0.1
677,585 + PfGW456L13_585 0.42 -0.3
677,585 + PfGW456L13_585 0.42 +0.2
677,585 + +2.8
677,585 + PfGW456L13_585 0.42 -0.1
677,585 + PfGW456L13_585 0.42 +0.3
677,585 + PfGW456L13_585 0.42 -0.5
677,585 + PfGW456L13_585 0.42 -0.6
677,585 + PfGW456L13_585 0.42 -1.4
677,585 + PfGW456L13_585 0.42 -0.8
677,585 + PfGW456L13_585 0.42 -1.3
677,585 + PfGW456L13_585 0.42 -1.5
677,586 - PfGW456L13_585 0.42 +0.9
677,586 - PfGW456L13_585 0.42 +1.6
677,586 - PfGW456L13_585 0.42 -0.1
677,586 - PfGW456L13_585 0.42 -0.6
677,586 - PfGW456L13_585 0.42 +0.6
677,586 - PfGW456L13_585 0.42 -0.3
677,586 - PfGW456L13_585 0.42 -0.1
677,586 - PfGW456L13_585 0.42 +0.7
677,586 - PfGW456L13_585 0.42 +0.0
677,586 - PfGW456L13_585 0.42 +0.6
677,586 - PfGW456L13_585 0.42 +1.4
677,586 - PfGW456L13_585 0.42 +0.3
677,586 - PfGW456L13_585 0.42 -0.4
677,586 - PfGW456L13_585 0.42 +0.7
677,685 + PfGW456L13_585 0.48 -1.5
677,745 + PfGW456L13_585 0.51 -0.6

Or see this region's nucleotide sequence