Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2650

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2648 and PfGW456L13_2649 are separated by 15 nucleotidesPfGW456L13_2649 and PfGW456L13_2650 are separated by 62 nucleotidesPfGW456L13_2650 and PfGW456L13_2651 are separated by 307 nucleotides PfGW456L13_2648 - Arginine-tRNA-protein transferase (EC 2.3.2.8), at 2,949,358 to 2,950,107 _2648 PfGW456L13_2649 - Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6), at 2,950,123 to 2,950,803 _2649 PfGW456L13_2650 - Thioredoxin reductase (EC 1.8.1.9), at 2,950,866 to 2,951,825 _2650 PfGW456L13_2651 - Cell division protein FtsK, at 2,952,133 to 2,954,544 _2651 Position (kb) 2950 2951 2952Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2949.944 kb on + strand, within PfGW456L13_2648at 2949.945 kb on - strand, within PfGW456L13_2648at 2949.945 kb on - strand, within PfGW456L13_2648at 2949.945 kb on - strand, within PfGW456L13_2648at 2950.010 kb on + strand, within PfGW456L13_2648at 2950.011 kb on - strand, within PfGW456L13_2648at 2950.037 kb on + strandat 2950.038 kb on - strandat 2950.038 kb on - strandat 2950.038 kb on - strandat 2950.038 kb on - strandat 2950.094 kb on + strandat 2950.094 kb on + strandat 2950.095 kb on - strandat 2950.095 kb on - strandat 2950.095 kb on - strandat 2950.095 kb on - strandat 2950.100 kb on + strandat 2950.100 kb on + strandat 2950.100 kb on + strandat 2950.101 kb on - strandat 2950.101 kb on - strandat 2950.172 kb on + strandat 2950.172 kb on + strandat 2950.172 kb on + strandat 2950.172 kb on + strandat 2950.172 kb on + strandat 2950.173 kb on - strandat 2950.195 kb on + strand, within PfGW456L13_2649at 2950.253 kb on - strand, within PfGW456L13_2649at 2950.442 kb on + strand, within PfGW456L13_2649at 2950.547 kb on + strand, within PfGW456L13_2649at 2950.548 kb on - strand, within PfGW456L13_2649at 2950.561 kb on + strand, within PfGW456L13_2649at 2950.779 kb on + strandat 2950.779 kb on + strandat 2950.779 kb on + strandat 2950.780 kb on - strandat 2950.780 kb on - strandat 2950.780 kb on - strandat 2950.780 kb on - strandat 2950.780 kb on - strandat 2950.780 kb on - strandat 2950.780 kb on - strandat 2950.789 kb on + strandat 2950.789 kb on + strandat 2950.789 kb on + strandat 2950.789 kb on + strandat 2950.789 kb on + strandat 2950.789 kb on + strandat 2950.789 kb on + strandat 2950.790 kb on - strandat 2950.790 kb on - strandat 2950.790 kb on - strandat 2950.790 kb on - strandat 2950.790 kb on - strandat 2950.854 kb on + strandat 2950.937 kb on + strandat 2950.937 kb on + strandat 2950.937 kb on + strandat 2950.937 kb on + strandat 2950.937 kb on + strandat 2950.938 kb on - strandat 2951.035 kb on - strand, within PfGW456L13_2650at 2951.041 kb on + strand, within PfGW456L13_2650at 2951.335 kb on + strand, within PfGW456L13_2650at 2951.336 kb on - strand, within PfGW456L13_2650at 2951.336 kb on - strand, within PfGW456L13_2650at 2951.470 kb on + strand, within PfGW456L13_2650at 2951.515 kb on + strand, within PfGW456L13_2650at 2951.515 kb on + strand, within PfGW456L13_2650at 2951.515 kb on + strand, within PfGW456L13_2650at 2951.516 kb on - strand, within PfGW456L13_2650at 2951.516 kb on - strand, within PfGW456L13_2650at 2951.516 kb on - strand, within PfGW456L13_2650at 2951.516 kb on - strand, within PfGW456L13_2650at 2951.581 kb on + strand, within PfGW456L13_2650at 2951.756 kb on - strandat 2951.770 kb on + strandat 2951.839 kb on + strandat 2951.839 kb on + strandat 2951.901 kb on + strandat 2951.901 kb on + strandat 2951.939 kb on + strandat 2951.949 kb on + strandat 2951.949 kb on + strandat 2951.966 kb on + strandat 2951.966 kb on + strandat 2951.970 kb on + strandat 2951.970 kb on + strandat 2951.970 kb on + strandat 2951.970 kb on + strandat 2951.970 kb on + strandat 2951.970 kb on + strandat 2951.972 kb on + strandat 2951.972 kb on + strandat 2951.972 kb on + strandat 2951.972 kb on + strandat 2951.972 kb on + strandat 2951.972 kb on + strandat 2951.972 kb on + strandat 2951.972 kb on + strandat 2951.972 kb on + strandat 2951.972 kb on + strandat 2951.972 kb on + strandat 2951.972 kb on + strandat 2951.972 kb on + strandat 2951.994 kb on + strandat 2952.014 kb on + strandat 2952.014 kb on + strandat 2952.014 kb on + strandat 2952.045 kb on + strandat 2952.048 kb on + strandat 2952.085 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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2,949,944 + PfGW456L13_2648 0.78 +0.4
2,949,945 - PfGW456L13_2648 0.78 -0.9
2,949,945 - PfGW456L13_2648 0.78 -0.7
2,949,945 - PfGW456L13_2648 0.78 -0.0
2,950,010 + PfGW456L13_2648 0.87 +0.6
2,950,011 - PfGW456L13_2648 0.87 -0.4
2,950,037 + -0.2
2,950,038 - +0.6
2,950,038 - -0.3
2,950,038 - -0.0
2,950,038 - -0.6
2,950,094 + -0.7
2,950,094 + -0.2
2,950,095 - -1.9
2,950,095 - -1.1
2,950,095 - -1.3
2,950,095 - -0.6
2,950,100 + +0.3
2,950,100 + +1.1
2,950,100 + -0.1
2,950,101 - -1.6
2,950,101 - -1.2
2,950,172 + -0.2
2,950,172 + -0.8
2,950,172 + -1.1
2,950,172 + -0.2
2,950,172 + -0.1
2,950,173 - -1.0
2,950,195 + PfGW456L13_2649 0.11 -1.2
2,950,253 - PfGW456L13_2649 0.19 -2.1
2,950,442 + PfGW456L13_2649 0.47 +0.3
2,950,547 + PfGW456L13_2649 0.62 -0.6
2,950,548 - PfGW456L13_2649 0.62 -0.6
2,950,561 + PfGW456L13_2649 0.64 +0.1
2,950,779 + +0.2
2,950,779 + -0.7
2,950,779 + -0.8
2,950,780 - -0.1
2,950,780 - -0.9
2,950,780 - +1.0
2,950,780 - -1.3
2,950,780 - -0.3
2,950,780 - -0.2
2,950,780 - -0.7
2,950,789 + +1.0
2,950,789 + +1.0
2,950,789 + +0.7
2,950,789 + -0.2
2,950,789 + -1.0
2,950,789 + -0.5
2,950,789 + +0.9
2,950,790 - +0.6
2,950,790 - +0.2
2,950,790 - +0.7
2,950,790 - -0.2
2,950,790 - -1.3
2,950,854 + -2.0
2,950,937 + +0.8
2,950,937 + +0.3
2,950,937 + -0.7
2,950,937 + -0.1
2,950,937 + -0.1
2,950,938 - -1.9
2,951,035 - PfGW456L13_2650 0.18 +0.3
2,951,041 + PfGW456L13_2650 0.18 -0.1
2,951,335 + PfGW456L13_2650 0.49 -0.9
2,951,336 - PfGW456L13_2650 0.49 +0.5
2,951,336 - PfGW456L13_2650 0.49 +0.4
2,951,470 + PfGW456L13_2650 0.63 -0.1
2,951,515 + PfGW456L13_2650 0.68 +0.2
2,951,515 + PfGW456L13_2650 0.68 -2.0
2,951,515 + PfGW456L13_2650 0.68 -0.9
2,951,516 - PfGW456L13_2650 0.68 -1.5
2,951,516 - PfGW456L13_2650 0.68 -0.5
2,951,516 - PfGW456L13_2650 0.68 +0.2
2,951,516 - PfGW456L13_2650 0.68 -0.5
2,951,581 + PfGW456L13_2650 0.74 -0.1
2,951,756 - +0.7
2,951,770 + +0.1
2,951,839 + -1.7
2,951,839 + -2.8
2,951,901 + -1.0
2,951,901 + -3.1
2,951,939 + -2.9
2,951,949 + -3.5
2,951,949 + -3.2
2,951,966 + -1.7
2,951,966 + -1.7
2,951,970 + -2.2
2,951,970 + -1.7
2,951,970 + -1.3
2,951,970 + -0.3
2,951,970 + -0.3
2,951,970 + -2.6
2,951,972 + -0.7
2,951,972 + -1.8
2,951,972 + -1.3
2,951,972 + -1.7
2,951,972 + -1.4
2,951,972 + -4.5
2,951,972 + -1.1
2,951,972 + -1.2
2,951,972 + -0.8
2,951,972 + -1.3
2,951,972 + -1.6
2,951,972 + -3.3
2,951,972 + -3.0
2,951,994 + -2.7
2,952,014 + -0.1
2,952,014 + +0.4
2,952,014 + -1.7
2,952,045 + -1.6
2,952,048 + -0.7
2,952,085 + -1.1

Or see this region's nucleotide sequence