Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2579

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2578 and PfGW456L13_2579 are separated by 215 nucleotidesPfGW456L13_2579 and PfGW456L13_2580 are separated by 48 nucleotidesPfGW456L13_2580 and PfGW456L13_2581 are separated by 107 nucleotides PfGW456L13_2578 - serine/threonine protein kinase, at 2,865,342 to 2,866,655 _2578 PfGW456L13_2579 - AFG1-like ATPase, at 2,866,871 to 2,867,809 _2579 PfGW456L13_2580 - hypothetical protein, at 2,867,858 to 2,868,052 _2580 PfGW456L13_2581 - Transmembrane regulator protein PrtR, at 2,868,160 to 2,868,912 _2581 Position (kb) 2866 2867 2868Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2865.940 kb on + strand, within PfGW456L13_2578at 2865.940 kb on + strand, within PfGW456L13_2578at 2865.940 kb on + strand, within PfGW456L13_2578at 2865.940 kb on + strand, within PfGW456L13_2578at 2865.940 kb on + strand, within PfGW456L13_2578at 2865.940 kb on + strand, within PfGW456L13_2578at 2865.941 kb on - strand, within PfGW456L13_2578at 2865.941 kb on - strand, within PfGW456L13_2578at 2865.941 kb on - strand, within PfGW456L13_2578at 2866.117 kb on + strand, within PfGW456L13_2578at 2866.117 kb on + strand, within PfGW456L13_2578at 2866.274 kb on - strand, within PfGW456L13_2578at 2866.376 kb on + strand, within PfGW456L13_2578at 2866.376 kb on + strand, within PfGW456L13_2578at 2866.376 kb on + strand, within PfGW456L13_2578at 2866.376 kb on + strand, within PfGW456L13_2578at 2866.377 kb on - strand, within PfGW456L13_2578at 2866.649 kb on + strandat 2866.672 kb on - strandat 2866.676 kb on + strandat 2866.676 kb on + strandat 2866.677 kb on - strandat 2866.677 kb on - strandat 2866.677 kb on - strandat 2866.677 kb on - strandat 2866.782 kb on + strandat 2866.782 kb on + strandat 2866.782 kb on + strandat 2866.783 kb on - strandat 2866.783 kb on - strandat 2866.783 kb on - strandat 2867.001 kb on + strand, within PfGW456L13_2579at 2867.001 kb on + strand, within PfGW456L13_2579at 2867.001 kb on + strand, within PfGW456L13_2579at 2867.001 kb on + strand, within PfGW456L13_2579at 2867.001 kb on + strand, within PfGW456L13_2579at 2867.001 kb on + strand, within PfGW456L13_2579at 2867.002 kb on - strand, within PfGW456L13_2579at 2867.002 kb on - strand, within PfGW456L13_2579at 2867.002 kb on - strand, within PfGW456L13_2579at 2867.006 kb on + strand, within PfGW456L13_2579at 2867.006 kb on + strand, within PfGW456L13_2579at 2867.006 kb on + strand, within PfGW456L13_2579at 2867.006 kb on + strand, within PfGW456L13_2579at 2867.006 kb on + strand, within PfGW456L13_2579at 2867.007 kb on - strand, within PfGW456L13_2579at 2867.007 kb on - strand, within PfGW456L13_2579at 2867.007 kb on - strand, within PfGW456L13_2579at 2867.007 kb on - strand, within PfGW456L13_2579at 2867.007 kb on - strand, within PfGW456L13_2579at 2867.023 kb on + strand, within PfGW456L13_2579at 2867.023 kb on + strand, within PfGW456L13_2579at 2867.024 kb on - strand, within PfGW456L13_2579at 2867.024 kb on - strand, within PfGW456L13_2579at 2867.024 kb on - strand, within PfGW456L13_2579at 2867.024 kb on - strand, within PfGW456L13_2579at 2867.112 kb on + strand, within PfGW456L13_2579at 2867.112 kb on + strand, within PfGW456L13_2579at 2867.113 kb on - strand, within PfGW456L13_2579at 2867.155 kb on + strand, within PfGW456L13_2579at 2867.156 kb on - strand, within PfGW456L13_2579at 2867.156 kb on - strand, within PfGW456L13_2579at 2867.203 kb on + strand, within PfGW456L13_2579at 2867.207 kb on + strand, within PfGW456L13_2579at 2867.286 kb on + strand, within PfGW456L13_2579at 2867.286 kb on + strand, within PfGW456L13_2579at 2867.377 kb on + strand, within PfGW456L13_2579at 2867.415 kb on + strand, within PfGW456L13_2579at 2867.751 kb on + strandat 2867.847 kb on + strandat 2867.848 kb on - strandat 2867.877 kb on + strandat 2867.877 kb on + strandat 2868.002 kb on - strand, within PfGW456L13_2580at 2868.045 kb on + strandat 2868.045 kb on + strandat 2868.045 kb on + strandat 2868.045 kb on + strandat 2868.201 kb on + strandat 2868.202 kb on - strandat 2868.224 kb on + strandat 2868.224 kb on + strandat 2868.224 kb on + strandat 2868.224 kb on + strandat 2868.224 kb on + strandat 2868.224 kb on + strandat 2868.224 kb on + strandat 2868.224 kb on + strandat 2868.224 kb on + strandat 2868.224 kb on + strandat 2868.224 kb on + strandat 2868.225 kb on - strandat 2868.225 kb on - strandat 2868.225 kb on - strandat 2868.225 kb on - strandat 2868.225 kb on - strandat 2868.230 kb on + strandat 2868.231 kb on - strandat 2868.231 kb on - strandat 2868.249 kb on - strand, within PfGW456L13_2581at 2868.323 kb on + strand, within PfGW456L13_2581at 2868.357 kb on - strand, within PfGW456L13_2581at 2868.697 kb on + strand, within PfGW456L13_2581at 2868.698 kb on - strand, within PfGW456L13_2581at 2868.698 kb on - strand, within PfGW456L13_2581at 2868.698 kb on - strand, within PfGW456L13_2581

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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2,865,940 + PfGW456L13_2578 0.46 -0.1
2,865,940 + PfGW456L13_2578 0.46 +0.7
2,865,940 + PfGW456L13_2578 0.46 +0.1
2,865,940 + PfGW456L13_2578 0.46 -0.1
2,865,940 + PfGW456L13_2578 0.46 +0.2
2,865,940 + PfGW456L13_2578 0.46 -0.0
2,865,941 - PfGW456L13_2578 0.46 +0.8
2,865,941 - PfGW456L13_2578 0.46 -0.6
2,865,941 - PfGW456L13_2578 0.46 +0.2
2,866,117 + PfGW456L13_2578 0.59 -0.9
2,866,117 + PfGW456L13_2578 0.59 -0.3
2,866,274 - PfGW456L13_2578 0.71 -0.7
2,866,376 + PfGW456L13_2578 0.79 +1.0
2,866,376 + PfGW456L13_2578 0.79 -0.2
2,866,376 + PfGW456L13_2578 0.79 +0.2
2,866,376 + PfGW456L13_2578 0.79 -0.0
2,866,377 - PfGW456L13_2578 0.79 +0.5
2,866,649 + -0.7
2,866,672 - -2.2
2,866,676 + +0.7
2,866,676 + -0.3
2,866,677 - -0.6
2,866,677 - -0.7
2,866,677 - +0.9
2,866,677 - -0.1
2,866,782 + -0.3
2,866,782 + +0.8
2,866,782 + +1.5
2,866,783 - +0.1
2,866,783 - -0.4
2,866,783 - +0.2
2,867,001 + PfGW456L13_2579 0.14 +0.3
2,867,001 + PfGW456L13_2579 0.14 +0.3
2,867,001 + PfGW456L13_2579 0.14 +0.2
2,867,001 + PfGW456L13_2579 0.14 -2.5
2,867,001 + PfGW456L13_2579 0.14 -0.6
2,867,001 + PfGW456L13_2579 0.14 +0.1
2,867,002 - PfGW456L13_2579 0.14 +0.2
2,867,002 - PfGW456L13_2579 0.14 -0.2
2,867,002 - PfGW456L13_2579 0.14 -0.1
2,867,006 + PfGW456L13_2579 0.14 +0.9
2,867,006 + PfGW456L13_2579 0.14 +0.4
2,867,006 + PfGW456L13_2579 0.14 +0.9
2,867,006 + PfGW456L13_2579 0.14 -0.0
2,867,006 + PfGW456L13_2579 0.14 -0.0
2,867,007 - PfGW456L13_2579 0.14 -0.3
2,867,007 - PfGW456L13_2579 0.14 +1.0
2,867,007 - PfGW456L13_2579 0.14 -0.5
2,867,007 - PfGW456L13_2579 0.14 -0.4
2,867,007 - PfGW456L13_2579 0.14 -2.5
2,867,023 + PfGW456L13_2579 0.16 -1.1
2,867,023 + PfGW456L13_2579 0.16 -0.2
2,867,024 - PfGW456L13_2579 0.16 -0.9
2,867,024 - PfGW456L13_2579 0.16 -0.5
2,867,024 - PfGW456L13_2579 0.16 -0.9
2,867,024 - PfGW456L13_2579 0.16 +0.0
2,867,112 + PfGW456L13_2579 0.26 +1.2
2,867,112 + PfGW456L13_2579 0.26 -1.5
2,867,113 - PfGW456L13_2579 0.26 -0.9
2,867,155 + PfGW456L13_2579 0.30 -0.7
2,867,156 - PfGW456L13_2579 0.30 -0.4
2,867,156 - PfGW456L13_2579 0.30 +0.5
2,867,203 + PfGW456L13_2579 0.35 -0.9
2,867,207 + PfGW456L13_2579 0.36 +0.1
2,867,286 + PfGW456L13_2579 0.44 +0.9
2,867,286 + PfGW456L13_2579 0.44 +0.6
2,867,377 + PfGW456L13_2579 0.54 -1.7
2,867,415 + PfGW456L13_2579 0.58 +0.0
2,867,751 + -0.9
2,867,847 + +0.2
2,867,848 - -0.8
2,867,877 + +0.9
2,867,877 + +0.1
2,868,002 - PfGW456L13_2580 0.74 +0.2
2,868,045 + -0.6
2,868,045 + -0.6
2,868,045 + -0.8
2,868,045 + +0.3
2,868,201 + +0.2
2,868,202 - -0.9
2,868,224 + +0.5
2,868,224 + +0.1
2,868,224 + +0.1
2,868,224 + +0.2
2,868,224 + +0.5
2,868,224 + +2.3
2,868,224 + -2.8
2,868,224 + +0.2
2,868,224 + +0.6
2,868,224 + +2.1
2,868,224 + -0.6
2,868,225 - -0.8
2,868,225 - -3.4
2,868,225 - +0.7
2,868,225 - -0.1
2,868,225 - +0.2
2,868,230 + +0.6
2,868,231 - -0.3
2,868,231 - -0.3
2,868,249 - PfGW456L13_2581 0.12 +0.6
2,868,323 + PfGW456L13_2581 0.22 -0.3
2,868,357 - PfGW456L13_2581 0.26 -1.7
2,868,697 + PfGW456L13_2581 0.71 -2.1
2,868,698 - PfGW456L13_2581 0.71 -1.8
2,868,698 - PfGW456L13_2581 0.71 -0.7
2,868,698 - PfGW456L13_2581 0.71 +0.7

Or see this region's nucleotide sequence