Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS30475

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS07785 and PFLU_RS07790 are separated by 239 nucleotidesPFLU_RS07790 and PFLU_RS30475 are separated by 39 nucleotidesPFLU_RS30475 and PFLU_RS07795 are separated by 45 nucleotides PFLU_RS07785: PFLU_RS07785 - VacJ family lipoprotein, at 1,732,877 to 1,733,566 _RS07785 PFLU_RS07790: PFLU_RS07790 - PilZ domain-containing protein, at 1,733,806 to 1,734,102 _RS07790 PFLU_RS30475: PFLU_RS30475 - hypothetical protein, at 1,734,142 to 1,734,333 _RS30475 PFLU_RS07795: PFLU_RS07795 - SpoIIE family protein phosphatase, at 1,734,379 to 1,735,560 _RS07795 Position (kb) 1734 1735Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1733.303 kb on + strand, within PFLU_RS07785at 1733.303 kb on + strand, within PFLU_RS07785at 1733.303 kb on + strand, within PFLU_RS07785at 1733.303 kb on + strand, within PFLU_RS07785at 1733.303 kb on + strand, within PFLU_RS07785at 1733.304 kb on - strand, within PFLU_RS07785at 1733.304 kb on - strand, within PFLU_RS07785at 1733.304 kb on - strand, within PFLU_RS07785at 1733.304 kb on - strand, within PFLU_RS07785at 1733.357 kb on + strand, within PFLU_RS07785at 1733.357 kb on + strand, within PFLU_RS07785at 1733.357 kb on + strand, within PFLU_RS07785at 1733.357 kb on + strand, within PFLU_RS07785at 1733.358 kb on - strand, within PFLU_RS07785at 1733.358 kb on - strand, within PFLU_RS07785at 1733.358 kb on - strand, within PFLU_RS07785at 1733.358 kb on - strand, within PFLU_RS07785at 1733.358 kb on - strand, within PFLU_RS07785at 1733.358 kb on - strand, within PFLU_RS07785at 1733.358 kb on - strand, within PFLU_RS07785at 1733.358 kb on - strand, within PFLU_RS07785at 1733.358 kb on - strand, within PFLU_RS07785at 1733.358 kb on - strand, within PFLU_RS07785at 1733.369 kb on + strand, within PFLU_RS07785at 1733.369 kb on + strand, within PFLU_RS07785at 1733.369 kb on + strand, within PFLU_RS07785at 1733.369 kb on + strand, within PFLU_RS07785at 1733.369 kb on + strand, within PFLU_RS07785at 1733.369 kb on + strand, within PFLU_RS07785at 1733.369 kb on + strand, within PFLU_RS07785at 1733.370 kb on - strand, within PFLU_RS07785at 1733.370 kb on - strand, within PFLU_RS07785at 1733.370 kb on - strand, within PFLU_RS07785at 1733.370 kb on - strand, within PFLU_RS07785at 1733.370 kb on - strand, within PFLU_RS07785at 1733.370 kb on - strand, within PFLU_RS07785at 1733.381 kb on + strand, within PFLU_RS07785at 1733.387 kb on + strand, within PFLU_RS07785at 1733.387 kb on + strand, within PFLU_RS07785at 1733.387 kb on + strand, within PFLU_RS07785at 1733.387 kb on + strand, within PFLU_RS07785at 1733.387 kb on + strand, within PFLU_RS07785at 1733.387 kb on + strand, within PFLU_RS07785at 1733.387 kb on + strand, within PFLU_RS07785at 1733.388 kb on - strand, within PFLU_RS07785at 1733.388 kb on - strand, within PFLU_RS07785at 1733.388 kb on - strand, within PFLU_RS07785at 1733.388 kb on - strand, within PFLU_RS07785at 1733.388 kb on - strand, within PFLU_RS07785at 1733.388 kb on - strand, within PFLU_RS07785at 1733.388 kb on - strand, within PFLU_RS07785at 1733.389 kb on + strand, within PFLU_RS07785at 1733.389 kb on + strand, within PFLU_RS07785at 1733.389 kb on + strand, within PFLU_RS07785at 1733.389 kb on + strand, within PFLU_RS07785at 1733.389 kb on + strand, within PFLU_RS07785at 1733.389 kb on + strand, within PFLU_RS07785at 1733.390 kb on - strand, within PFLU_RS07785at 1733.390 kb on - strand, within PFLU_RS07785at 1733.390 kb on - strand, within PFLU_RS07785at 1733.390 kb on - strand, within PFLU_RS07785at 1733.485 kb on + strand, within PFLU_RS07785at 1733.485 kb on + strand, within PFLU_RS07785at 1733.486 kb on - strand, within PFLU_RS07785at 1733.489 kb on + strand, within PFLU_RS07785at 1733.489 kb on + strand, within PFLU_RS07785at 1733.489 kb on + strand, within PFLU_RS07785at 1733.489 kb on + strand, within PFLU_RS07785at 1733.489 kb on + strand, within PFLU_RS07785at 1733.489 kb on + strand, within PFLU_RS07785at 1733.489 kb on + strand, within PFLU_RS07785at 1733.489 kb on + strand, within PFLU_RS07785at 1733.489 kb on + strand, within PFLU_RS07785at 1733.489 kb on + strand, within PFLU_RS07785at 1733.489 kb on + strand, within PFLU_RS07785at 1733.490 kb on - strand, within PFLU_RS07785at 1733.490 kb on - strand, within PFLU_RS07785at 1733.490 kb on - strand, within PFLU_RS07785at 1733.490 kb on - strand, within PFLU_RS07785at 1733.490 kb on - strand, within PFLU_RS07785at 1733.490 kb on - strand, within PFLU_RS07785at 1733.490 kb on - strand, within PFLU_RS07785at 1733.490 kb on - strand, within PFLU_RS07785at 1733.490 kb on - strand, within PFLU_RS07785at 1733.490 kb on - strand, within PFLU_RS07785at 1733.490 kb on - strand, within PFLU_RS07785at 1733.511 kb on - strandat 1733.511 kb on - strandat 1733.564 kb on + strandat 1733.565 kb on - strandat 1733.622 kb on - strandat 1733.637 kb on - strandat 1733.637 kb on - strandat 1733.637 kb on - strandat 1733.751 kb on + strandat 1733.751 kb on + strandat 1733.751 kb on + strandat 1733.751 kb on + strandat 1733.751 kb on + strandat 1733.751 kb on + strandat 1733.751 kb on + strandat 1733.751 kb on + strandat 1733.826 kb on + strandat 1733.826 kb on + strandat 1733.827 kb on - strandat 1733.866 kb on + strand, within PFLU_RS07790at 1733.866 kb on + strand, within PFLU_RS07790at 1733.923 kb on + strand, within PFLU_RS07790at 1734.080 kb on + strandat 1734.081 kb on - strandat 1734.081 kb on - strandat 1734.102 kb on + strandat 1734.102 kb on + strandat 1734.102 kb on + strandat 1734.102 kb on + strandat 1734.102 kb on + strandat 1734.102 kb on + strandat 1734.102 kb on + strandat 1734.102 kb on + strandat 1734.103 kb on - strandat 1734.103 kb on - strandat 1734.103 kb on - strandat 1734.103 kb on - strandat 1734.103 kb on - strandat 1734.115 kb on + strandat 1734.115 kb on + strandat 1734.116 kb on - strandat 1734.116 kb on - strandat 1734.116 kb on - strandat 1734.143 kb on + strandat 1734.143 kb on + strandat 1734.143 kb on + strandat 1734.144 kb on - strandat 1734.145 kb on + strandat 1734.146 kb on - strandat 1734.146 kb on - strandat 1734.167 kb on + strand, within PFLU_RS30475at 1734.167 kb on + strand, within PFLU_RS30475at 1734.167 kb on + strand, within PFLU_RS30475at 1734.167 kb on + strand, within PFLU_RS30475at 1734.168 kb on - strand, within PFLU_RS30475at 1734.168 kb on - strand, within PFLU_RS30475at 1734.168 kb on - strand, within PFLU_RS30475at 1734.168 kb on - strand, within PFLU_RS30475at 1734.235 kb on - strand, within PFLU_RS30475at 1734.253 kb on + strand, within PFLU_RS30475at 1734.253 kb on + strand, within PFLU_RS30475at 1734.287 kb on + strand, within PFLU_RS30475at 1734.287 kb on + strand, within PFLU_RS30475at 1734.287 kb on + strand, within PFLU_RS30475at 1734.288 kb on - strand, within PFLU_RS30475at 1734.301 kb on + strand, within PFLU_RS30475at 1734.317 kb on + strandat 1734.317 kb on + strandat 1734.356 kb on + strandat 1734.356 kb on + strandat 1734.356 kb on + strandat 1734.356 kb on + strandat 1734.356 kb on + strandat 1734.356 kb on + strandat 1734.356 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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1,733,303 + PFLU_RS07785 0.62 -1.6
1,733,303 + PFLU_RS07785 0.62 -1.9
1,733,303 + PFLU_RS07785 0.62 -1.0
1,733,303 + PFLU_RS07785 0.62 -2.4
1,733,303 + PFLU_RS07785 0.62 -1.8
1,733,304 - PFLU_RS07785 0.62 -0.0
1,733,304 - PFLU_RS07785 0.62 -2.0
1,733,304 - PFLU_RS07785 0.62 -1.8
1,733,304 - PFLU_RS07785 0.62 -2.0
1,733,357 + PFLU_RS07785 0.70 -1.8
1,733,357 + PFLU_RS07785 0.70 -0.8
1,733,357 + PFLU_RS07785 0.70 +0.4
1,733,357 + PFLU_RS07785 0.70 -2.5
1,733,358 - PFLU_RS07785 0.70 -2.7
1,733,358 - PFLU_RS07785 0.70 +1.0
1,733,358 - PFLU_RS07785 0.70 -2.5
1,733,358 - PFLU_RS07785 0.70 -2.3
1,733,358 - PFLU_RS07785 0.70 -0.0
1,733,358 - PFLU_RS07785 0.70 -2.4
1,733,358 - PFLU_RS07785 0.70 -3.0
1,733,358 - PFLU_RS07785 0.70 -0.6
1,733,358 - PFLU_RS07785 0.70 -1.4
1,733,358 - PFLU_RS07785 0.70 -1.2
1,733,369 + PFLU_RS07785 0.71 -2.6
1,733,369 + PFLU_RS07785 0.71 -2.3
1,733,369 + PFLU_RS07785 0.71 -2.4
1,733,369 + PFLU_RS07785 0.71 -1.9
1,733,369 + PFLU_RS07785 0.71 -0.4
1,733,369 + PFLU_RS07785 0.71 -2.7
1,733,369 + PFLU_RS07785 0.71 -0.4
1,733,370 - PFLU_RS07785 0.71 -2.7
1,733,370 - PFLU_RS07785 0.71 -0.8
1,733,370 - PFLU_RS07785 0.71 -0.4
1,733,370 - PFLU_RS07785 0.71 -2.4
1,733,370 - PFLU_RS07785 0.71 -2.6
1,733,370 - PFLU_RS07785 0.71 -2.6
1,733,381 + PFLU_RS07785 0.73 -3.1
1,733,387 + PFLU_RS07785 0.74 -1.7
1,733,387 + PFLU_RS07785 0.74 -1.6
1,733,387 + PFLU_RS07785 0.74 -1.8
1,733,387 + PFLU_RS07785 0.74 -1.4
1,733,387 + PFLU_RS07785 0.74 -0.6
1,733,387 + PFLU_RS07785 0.74 -1.5
1,733,387 + PFLU_RS07785 0.74 -0.6
1,733,388 - PFLU_RS07785 0.74 -3.2
1,733,388 - PFLU_RS07785 0.74 -2.4
1,733,388 - PFLU_RS07785 0.74 -2.7
1,733,388 - PFLU_RS07785 0.74 -1.5
1,733,388 - PFLU_RS07785 0.74 -1.0
1,733,388 - PFLU_RS07785 0.74 -1.5
1,733,388 - PFLU_RS07785 0.74 -1.7
1,733,389 + PFLU_RS07785 0.74 -1.7
1,733,389 + PFLU_RS07785 0.74 -2.5
1,733,389 + PFLU_RS07785 0.74 -2.4
1,733,389 + PFLU_RS07785 0.74 -2.6
1,733,389 + PFLU_RS07785 0.74 -0.6
1,733,389 + PFLU_RS07785 0.74 -1.6
1,733,390 - PFLU_RS07785 0.74 -1.2
1,733,390 - PFLU_RS07785 0.74 -2.2
1,733,390 - PFLU_RS07785 0.74 -0.0
1,733,390 - PFLU_RS07785 0.74 -1.9
1,733,485 + PFLU_RS07785 0.88 -2.6
1,733,485 + PFLU_RS07785 0.88 -1.9
1,733,486 - PFLU_RS07785 0.88 -0.7
1,733,489 + PFLU_RS07785 0.89 -2.0
1,733,489 + PFLU_RS07785 0.89 -1.7
1,733,489 + PFLU_RS07785 0.89 -1.6
1,733,489 + PFLU_RS07785 0.89 -3.0
1,733,489 + PFLU_RS07785 0.89 -1.5
1,733,489 + PFLU_RS07785 0.89 -2.4
1,733,489 + PFLU_RS07785 0.89 -0.0
1,733,489 + PFLU_RS07785 0.89 -2.9
1,733,489 + PFLU_RS07785 0.89 -2.6
1,733,489 + PFLU_RS07785 0.89 +0.4
1,733,489 + PFLU_RS07785 0.89 -1.5
1,733,490 - PFLU_RS07785 0.89 -1.7
1,733,490 - PFLU_RS07785 0.89 -1.0
1,733,490 - PFLU_RS07785 0.89 -1.8
1,733,490 - PFLU_RS07785 0.89 -3.9
1,733,490 - PFLU_RS07785 0.89 -2.0
1,733,490 - PFLU_RS07785 0.89 -0.0
1,733,490 - PFLU_RS07785 0.89 -1.6
1,733,490 - PFLU_RS07785 0.89 -1.6
1,733,490 - PFLU_RS07785 0.89 -0.6
1,733,490 - PFLU_RS07785 0.89 -1.5
1,733,490 - PFLU_RS07785 0.89 -2.4
1,733,511 - -2.8
1,733,511 - -1.5
1,733,564 + -0.5
1,733,565 - +0.6
1,733,622 - -0.0
1,733,637 - +1.5
1,733,637 - +1.1
1,733,637 - -0.9
1,733,751 + +0.2
1,733,751 + +1.0
1,733,751 + +1.9
1,733,751 + -0.6
1,733,751 + -1.8
1,733,751 + +0.2
1,733,751 + +0.2
1,733,751 + +0.2
1,733,826 + +0.1
1,733,826 + -0.0
1,733,827 - -0.6
1,733,866 + PFLU_RS07790 0.20 -2.4
1,733,866 + PFLU_RS07790 0.20 -0.2
1,733,923 + PFLU_RS07790 0.39 -0.2
1,734,080 + -1.6
1,734,081 - +3.0
1,734,081 - -0.3
1,734,102 + -1.2
1,734,102 + -0.7
1,734,102 + +0.3
1,734,102 + -1.6
1,734,102 + +0.8
1,734,102 + +0.9
1,734,102 + +0.2
1,734,102 + +1.6
1,734,103 - +1.2
1,734,103 - +0.6
1,734,103 - -3.3
1,734,103 - -0.1
1,734,103 - -0.3
1,734,115 + -0.7
1,734,115 + -1.0
1,734,116 - -1.0
1,734,116 - +0.9
1,734,116 - +1.5
1,734,143 + +1.6
1,734,143 + +0.9
1,734,143 + -1.4
1,734,144 - +2.1
1,734,145 + +0.7
1,734,146 - -0.5
1,734,146 - +0.4
1,734,167 + PFLU_RS30475 0.13 +0.4
1,734,167 + PFLU_RS30475 0.13 -1.7
1,734,167 + PFLU_RS30475 0.13 -0.8
1,734,167 + PFLU_RS30475 0.13 +1.0
1,734,168 - PFLU_RS30475 0.14 -0.1
1,734,168 - PFLU_RS30475 0.14 -0.7
1,734,168 - PFLU_RS30475 0.14 +0.6
1,734,168 - PFLU_RS30475 0.14 +0.4
1,734,235 - PFLU_RS30475 0.48 +1.0
1,734,253 + PFLU_RS30475 0.58 +0.5
1,734,253 + PFLU_RS30475 0.58 +2.2
1,734,287 + PFLU_RS30475 0.76 +0.3
1,734,287 + PFLU_RS30475 0.76 +1.8
1,734,287 + PFLU_RS30475 0.76 +0.1
1,734,288 - PFLU_RS30475 0.76 +1.0
1,734,301 + PFLU_RS30475 0.83 -0.7
1,734,317 + -1.3
1,734,317 + +1.0
1,734,356 + +1.8
1,734,356 + -0.6
1,734,356 + +1.4
1,734,356 + +0.3
1,734,356 + +0.3
1,734,356 + -0.5
1,734,356 + +1.7

Or see this region's nucleotide sequence