Strain Fitness in Pseudomonas fluorescens SBW25

Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS30465

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	L-Arabinose (C)
				remove
1,624,453	+	PFLU_RS07290	0.40	-0.3
1,624,453	+	PFLU_RS07290	0.40	+2.0
1,624,453	+	PFLU_RS07290	0.40	+1.0
1,624,649	+	PFLU_RS07290	0.67	+1.0
1,624,844	-			+0.4
1,624,880	-			-0.6
1,624,880	-			-0.3
1,624,880	-			-2.5
1,624,899	+			+0.0
1,624,899	+			+1.5
1,625,055	+			-1.4
1,625,055	+			+1.5
1,625,099	+			+1.4
1,625,099	+			+1.3
1,625,131	+			+0.5
1,625,131	+			-2.4
1,625,135	+			-0.8
1,625,184	+			+1.7
1,625,184	+			+1.5
1,625,184	+			-3.2
1,625,184	+			-0.1
1,625,184	+			+0.9
1,625,185	-			+2.3
1,625,213	+			+1.6
1,625,213	+			-2.3
1,625,214	-			+0.3
1,625,214	-			-0.7
1,625,243	+			-1.7
1,625,243	+			+0.4
1,625,243	+			+1.7
1,625,243	+			+1.0
1,625,244	-			-1.7
1,625,244	-			+1.1
1,625,244	-			+0.9
1,625,244	-			+2.0
1,625,244	-			-0.6
1,625,244	-			-1.4
1,625,253	+			+0.2
1,625,253	+			+2.3
1,625,253	+			-1.8
1,625,253	+			+1.3
1,625,253	+			-1.9
1,625,253	+			+0.2
1,625,253	+			-0.0
1,625,254	-			-1.0
1,625,254	-			+0.0
1,625,254	-			+1.0
1,625,254	-			-1.2
1,625,254	-			-0.2
1,625,254	-			+2.5
1,625,271	+			+0.4
1,625,271	+			-0.3
1,625,271	+			-2.2
1,625,272	-			-1.0
1,625,272	-			-1.4
1,625,293	+			-1.0
1,625,299	-			-1.7
1,625,325	+			+2.9
1,625,325	+			+1.1
1,625,326	-			+1.5
1,625,354	+			+0.1
1,625,354	+			-0.9
1,625,354	+			-0.2
1,625,355	+			-2.2
1,625,382	+			-0.3
1,625,382	+			+0.8
1,625,382	+			+1.5
1,625,382	+			+1.4
1,625,383	-			-2.6
1,625,383	-			-0.3
1,625,383	-			+1.1
1,625,405	+			+1.2
1,625,405	+			-0.6
1,625,406	-			-1.6
1,625,406	-			-0.9
1,625,468	+	PFLU_RS30465	0.20	+1.3
1,625,468	+	PFLU_RS30465	0.20	-0.2
1,625,468	+	PFLU_RS30465	0.20	+2.0
1,625,468	+	PFLU_RS30465	0.20	+0.5
1,625,468	+	PFLU_RS30465	0.20	-0.0
1,625,469	-	PFLU_RS30465	0.20	-0.6
1,625,469	-	PFLU_RS30465	0.20	+1.7
1,625,474	-	PFLU_RS30465	0.21	-0.5
1,625,474	-	PFLU_RS30465	0.21	-1.0
1,625,485	+	PFLU_RS30465	0.23	+1.4
1,625,485	+	PFLU_RS30465	0.23	+0.8
1,625,517	+	PFLU_RS30465	0.29	+1.1
1,625,517	+	PFLU_RS30465	0.29	+0.4
1,625,518	-	PFLU_RS30465	0.30	+0.1
1,625,570	-	PFLU_RS30465	0.40	-0.8
1,625,668	+	PFLU_RS30465	0.59	+1.8
1,625,668	+	PFLU_RS30465	0.59	+0.6
1,625,668	+	PFLU_RS30465	0.59	+2.3
1,625,669	-	PFLU_RS30465	0.59	+0.2
1,625,669	-	PFLU_RS30465	0.59	+0.6
1,625,669	-	PFLU_RS30465	0.59	+0.2
1,625,672	+	PFLU_RS30465	0.60	-1.2
1,625,673	-	PFLU_RS30465	0.60	+0.3
1,625,673	-	PFLU_RS30465	0.60	-1.3
1,625,673	-	PFLU_RS30465	0.60	+0.0
1,625,673	-	PFLU_RS30465	0.60	+0.7
1,625,698	+	PFLU_RS30465	0.65	+0.8
1,625,698	+	PFLU_RS30465	0.65	-0.8
1,625,699	-	PFLU_RS30465	0.65	-2.7
1,625,699	-	PFLU_RS30465	0.65	-2.1
1,625,745	+	PFLU_RS30465	0.74	-0.3
1,625,746	-	PFLU_RS30465	0.74	-1.2
1,625,779	+	PFLU_RS30465	0.81	+0.6
1,625,779	+	PFLU_RS30465	0.81	+1.6
1,625,779	+	PFLU_RS30465	0.81	-2.5
1,625,779	+	PFLU_RS30465	0.81	-1.9
1,625,779	+	PFLU_RS30465	0.81	+0.3
1,625,779	+	PFLU_RS30465	0.81	-2.1
1,625,779	+	PFLU_RS30465	0.81	-2.1
1,625,779	+	PFLU_RS30465	0.81	+2.0
1,625,779	+	PFLU_RS30465	0.81	+1.3
1,625,779	+	PFLU_RS30465	0.81	+1.6
1,625,779	+	PFLU_RS30465	0.81	-1.4
1,625,779	+	PFLU_RS30465	0.81	-1.2
1,625,779	+	PFLU_RS30465	0.81	+2.2
1,625,779	+	PFLU_RS30465	0.81	-0.9
1,625,780	-	PFLU_RS30465	0.81	-2.0
1,625,780	-	PFLU_RS30465	0.81	+1.8
1,625,780	-	PFLU_RS30465	0.81	+1.4
1,625,780	-	PFLU_RS30465	0.81	+0.7
1,625,780	-	PFLU_RS30465	0.81	-2.1
1,625,780	-	PFLU_RS30465	0.81	+0.2
1,625,780	-	PFLU_RS30465	0.81	+2.0
1,625,780	-	PFLU_RS30465	0.81	-0.8
1,625,780	-	PFLU_RS30465	0.81	-2.8
1,625,780	-	PFLU_RS30465	0.81	-2.1
1,625,780	-	PFLU_RS30465	0.81	-0.3
1,625,780	-	PFLU_RS30465	0.81	+0.2
1,625,780	-	PFLU_RS30465	0.81	+1.2
1,625,780	-	PFLU_RS30465	0.81	+3.2
1,625,807	+	PFLU_RS30465	0.86	+1.0
1,625,807	+	PFLU_RS30465	0.86	-1.8
1,625,867	+			+1.3
1,625,867	+			+0.3
1,625,947	+			+0.6
1,625,977	+			-0.8
1,625,977	+			+0.3
1,625,977	+			+0.9
1,625,977	+			-3.7
1,625,977	+			-2.7
1,625,977	+			+3.4
1,625,977	+			+0.9
1,625,978	-			+3.4
1,625,978	-			+0.3
1,625,978	-			-1.3
1,625,978	-			+0.6
1,625,978	-			-2.7
1,626,068	+			+0.7
1,626,068	+			+2.0
1,626,068	+			-0.4
1,626,068	+			+1.2
1,626,068	+			-0.6
1,626,068	+			+0.7
1,626,068	+			+0.5
1,626,068	+			+2.1
1,626,069	-			-2.8
1,626,069	-			+0.0
1,626,069	-			-0.8
1,626,069	-			+2.7
1,626,069	-			-2.8
1,626,069	-			-0.8
1,626,069	-			+0.7
1,626,069	-			-0.6
1,626,069	-			-0.1
1,626,069	-			+1.7
1,626,069	-			+1.2
1,626,074	+			+2.0
1,626,074	+			+1.7
1,626,074	+			+0.1
1,626,094	+			+0.7
1,626,095	-			+0.8
1,626,139	+			+1.6
1,626,140	-			+0.3
1,626,151	+			-0.6
1,626,152	-			+0.4
1,626,187	+			+2.5
1,626,187	+			-1.0
1,626,187	+			+0.6
1,626,188	-			-0.7
1,626,188	-			-3.3
1,626,188	-			+0.3
1,626,188	-			+0.2
1,626,188	-			-3.1
1,626,256	-	PFLU_RS07305	0.14	+0.8
1,626,275	+	PFLU_RS07305	0.16	+2.5
1,626,276	-	PFLU_RS07305	0.16	+1.4
1,626,312	+	PFLU_RS07305	0.19	+1.7
1,626,312	+	PFLU_RS07305	0.19	+0.0
1,626,312	+	PFLU_RS07305	0.19	+1.6
1,626,312	+	PFLU_RS07305	0.19	-2.0
1,626,313	-	PFLU_RS07305	0.19	-0.8
1,626,313	-	PFLU_RS07305	0.19	+1.1
1,626,313	-	PFLU_RS07305	0.19	-2.9
1,626,314	+	PFLU_RS07305	0.19	-2.3
1,626,315	-	PFLU_RS07305	0.19	-0.0
1,626,329	+	PFLU_RS07305	0.20	-2.4
1,626,333	-	PFLU_RS07305	0.20	+0.2
1,626,427	+	PFLU_RS07305	0.28	+0.5
1,626,427	+	PFLU_RS07305	0.28	-1.4
1,626,427	+	PFLU_RS07305	0.28	-1.8
1,626,427	+	PFLU_RS07305	0.28	+3.0
1,626,428	-	PFLU_RS07305	0.28	-0.3
1,626,552	-	PFLU_RS07305	0.37	+5.4
1,626,591	+	PFLU_RS07305	0.40	-0.3
1,626,725	+	PFLU_RS07305	0.51	+1.1
1,626,726	-	PFLU_RS07305	0.51	+1.1

Or see this region's nucleotide sequence