Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS16650

Experiment: L-Arabinose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose (C)
3,774,260	-		PFLU_RS16640	0.87	+2.8
3,774,483	+				+0.2
3,774,483	+				+0.8
3,774,484	-				+1.4
3,774,509	+				-0.2
3,774,509	+				-3.1
3,774,510	-				-1.0
3,774,510	-				-1.9
3,774,527	+				-1.2
3,774,541	+				+1.1
3,774,541	+				-0.3
3,774,541	+				+1.1
3,774,541	+				-1.5
3,774,541	+				-1.6
3,774,541	+				+3.7
3,774,542	-				-1.5
3,774,542	-				+2.3
3,774,542	-				+0.0
3,774,542	-				-1.0
3,774,542	-				+1.0
3,774,542	-				+0.9
3,774,542	-				+2.3
3,774,542	-				-0.7
3,774,542	-				-0.5
3,774,584	+				+0.6
3,774,584	+				+1.0
3,774,584	+				+1.5
3,774,585	-				-2.0
3,774,651	+		PFLU_RS16645	0.15	+0.1
3,774,652	-		PFLU_RS16645	0.16	+0.3
3,774,652	-		PFLU_RS16645	0.16	+1.6
3,774,670	+		PFLU_RS16645	0.19	-0.7
3,774,671	-		PFLU_RS16645	0.19	+3.0
3,774,761	+		PFLU_RS16645	0.38	+0.1
3,774,761	+		PFLU_RS16645	0.38	+0.7
3,774,761	+		PFLU_RS16645	0.38	+1.0
3,774,761	+		PFLU_RS16645	0.38	-1.9
3,774,761	+		PFLU_RS16645	0.38	+3.2
3,774,761	+		PFLU_RS16645	0.38	-1.9
3,774,761	+		PFLU_RS16645	0.38	-0.7
3,774,762	-		PFLU_RS16645	0.39	-0.3
3,774,762	-		PFLU_RS16645	0.39	+1.5
3,774,762	-		PFLU_RS16645	0.39	+1.3
3,774,787	-		PFLU_RS16645	0.44	-3.5
3,774,825	+		PFLU_RS16645	0.52	+2.1
3,774,826	-		PFLU_RS16645	0.52	-2.1
3,774,839	+		PFLU_RS16645	0.55	-1.9
3,774,840	-		PFLU_RS16645	0.55	-0.3
3,774,840	-		PFLU_RS16645	0.55	+1.6
3,774,840	-		PFLU_RS16645	0.55	-1.9
3,774,840	-		PFLU_RS16645	0.55	+0.2
3,774,928	+		PFLU_RS16645	0.73	+0.8
3,774,928	+		PFLU_RS16645	0.73	+1.3
3,774,928	+		PFLU_RS16645	0.73	-0.5
3,774,929	-		PFLU_RS16645	0.74	+0.2
3,774,929	-		PFLU_RS16645	0.74	-2.1
3,774,969	-		PFLU_RS16645	0.82	-2.1
3,775,016	+				-2.4
3,775,016	+				-1.7
3,775,016	+				+1.4
3,775,016	+				-1.7
3,775,016	+				-0.1
3,775,016	+				-1.8
3,775,016	+				+0.4
3,775,016	+				+0.6
3,775,016	+				-2.0
3,775,016	+				+0.4
3,775,017	-				+0.8
3,775,017	-				+0.2
3,775,017	-				+1.3
3,775,017	-				+1.8
3,775,017	-				-2.5
3,775,017	-				-2.3
3,775,017	-				-2.3
3,775,017	-				+1.3
3,775,017	-				-0.8
3,775,017	-				+0.7
3,775,017	-				-0.2
3,775,017	-				+0.5
3,775,017	-				-2.5
3,775,019	+				+1.0
3,775,019	+				+0.5
3,775,020	-				+1.2
3,775,020	-				-0.9
3,775,020	-				+0.7
3,775,020	-				-1.7
3,775,020	-				-1.7
3,775,020	-				+0.1
3,775,098	+				+1.0
3,775,098	+				-0.9
3,775,098	+				-2.3
3,775,098	+				-0.8
3,775,098	+				+1.1
3,775,098	+				-0.9
3,775,098	+				+0.3
3,775,098	+				-2.1
3,775,098	+				+0.3
3,775,098	+				+0.3
3,775,098	+				-0.8
3,775,098	+				-0.4
3,775,098	+				+0.2
3,775,098	+				+1.8
3,775,099	-				+0.9
3,775,099	-				-0.4
3,775,099	-				-0.1
3,775,099	-				+1.3
3,775,099	-				+2.1
3,775,099	-				+0.3
3,775,099	-				+0.6
3,775,099	-				-1.1
3,775,099	-				+1.0
3,775,099	-				-0.9
3,775,099	-				+0.6
3,775,099	-				-1.1
3,775,099	-				-1.3
3,775,099	-				+0.7
3,775,099	-				-2.1
3,775,099	-				+0.8
3,775,099	-				-2.6
3,775,099	-				+1.8
3,775,099	-				-0.4
3,775,099	-				-2.7
3,775,099	-				+0.3
3,775,166	+				-0.6
3,775,192	+				-1.7
3,775,198	+				-0.2
3,775,198	+				+0.0
3,775,198	+				+0.7
3,775,198	+				+0.5
3,775,199	-				-0.5
3,775,199	-				-0.5
3,775,199	-				-0.1
3,775,199	-				+0.6
3,775,199	-				+1.9
3,775,199	-				-1.7
3,775,220	-				+1.4
3,775,220	-				+0.8
3,775,263	+				+0.5
3,775,264	-				-1.1
3,775,342	-				-1.9
3,775,487	-		PFLU_RS16650	0.19	-2.3
3,775,487	-		PFLU_RS16650	0.19	+0.8
3,775,487	-		PFLU_RS16650	0.19	-1.1
3,775,575	+		PFLU_RS16650	0.26	-0.7
3,775,575	+		PFLU_RS16650	0.26	+0.5
3,775,576	-		PFLU_RS16650	0.26	-0.1
3,775,576	-		PFLU_RS16650	0.26	+1.6
3,775,639	-		PFLU_RS16650	0.31	-1.0
3,775,678	-		PFLU_RS16650	0.34	-0.5
3,775,685	+		PFLU_RS16650	0.35	-0.7
3,775,685	+		PFLU_RS16650	0.35	-0.3
3,775,686	-		PFLU_RS16650	0.35	+0.5
3,775,707	+		PFLU_RS16650	0.36	+0.0
3,775,707	+		PFLU_RS16650	0.36	-2.4
3,775,707	+		PFLU_RS16650	0.36	+0.1
3,775,707	+		PFLU_RS16650	0.36	+0.4
3,775,707	+		PFLU_RS16650	0.36	+2.5
3,775,708	-		PFLU_RS16650	0.37	+0.9
3,775,708	-		PFLU_RS16650	0.37	-1.9
3,775,708	-		PFLU_RS16650	0.37	+1.3
3,775,708	-		PFLU_RS16650	0.37	+1.7
3,775,710	+		PFLU_RS16650	0.37	-2.2
3,775,711	-		PFLU_RS16650	0.37	+0.5
3,775,736	+		PFLU_RS16650	0.39	+0.3
3,775,736	+		PFLU_RS16650	0.39	-1.1
3,775,736	+		PFLU_RS16650	0.39	+0.3
3,775,736	+		PFLU_RS16650	0.39	-0.2
3,775,737	-		PFLU_RS16650	0.39	-2.6
3,775,737	-		PFLU_RS16650	0.39	+1.4
3,775,737	-		PFLU_RS16650	0.39	-0.5
3,775,809	-		PFLU_RS16650	0.44	+0.9
3,775,815	+		PFLU_RS16650	0.45	-1.1
3,775,816	-		PFLU_RS16650	0.45	+0.7
3,775,836	+		PFLU_RS16650	0.47	+1.6
3,775,907	+		PFLU_RS16650	0.52	+1.5
3,775,974	+		PFLU_RS16650	0.57	+0.8
3,775,974	+		PFLU_RS16650	0.57	-1.2
3,775,974	+		PFLU_RS16650	0.57	+1.9
3,775,974	+		PFLU_RS16650	0.57	+2.9
3,775,974	+		PFLU_RS16650	0.57	-0.5
3,775,974	+		PFLU_RS16650	0.57	-0.5
3,775,974	+		PFLU_RS16650	0.57	+0.6
3,775,974	+		PFLU_RS16650	0.57	+0.5
3,775,975	-		PFLU_RS16650	0.57	-0.8
3,775,975	-		PFLU_RS16650	0.57	-3.6
3,775,975	-		PFLU_RS16650	0.57	+0.0
3,775,975	-		PFLU_RS16650	0.57	-0.1
3,775,975	-		PFLU_RS16650	0.57	+0.5
3,776,046	+		PFLU_RS16650	0.63	-1.5
3,776,057	-		PFLU_RS16650	0.64	+0.4
3,776,057	-		PFLU_RS16650	0.64	+0.1
3,776,057	-		PFLU_RS16650	0.64	-0.9
3,776,089	+		PFLU_RS16650	0.66	-1.3
3,776,101	+		PFLU_RS16650	0.67	-1.2
3,776,102	-		PFLU_RS16650	0.67	-0.3
3,776,137	-		PFLU_RS16650	0.70	-2.6
3,776,183	-		PFLU_RS16650	0.74	-3.5
3,776,261	+		PFLU_RS16650	0.80	-0.5
3,776,261	+		PFLU_RS16650	0.80	+2.0
3,776,361	+		PFLU_RS16650	0.88	+2.6
3,776,370	-		PFLU_RS16650	0.88	-3.1
3,776,578	+				+1.0
3,776,579	-				+1.4
3,776,627	+				+0.2
3,776,630	-				-1.7
3,776,667	+		PFLU_RS16655	0.13	+0.9
3,776,668	-		PFLU_RS16655	0.13	-0.7
3,776,668	-		PFLU_RS16655	0.13	+1.3
3,776,782	+		PFLU_RS16655	0.27	+0.7
3,776,783	-		PFLU_RS16655	0.27	-2.5
3,776,784	+		PFLU_RS16655	0.27	+1.4
3,777,010	+		PFLU_RS16655	0.54	-2.1
3,777,078	-		PFLU_RS16655	0.62	+0.5
3,777,084	+		PFLU_RS16655	0.63	+2.5
3,777,091	-		PFLU_RS16655	0.64	-2.3
3,777,134	+		PFLU_RS16655	0.69	-0.2
3,777,135	-		PFLU_RS16655	0.69	+1.3
3,777,135	-		PFLU_RS16655	0.69	-1.1
3,777,139	+		PFLU_RS16655	0.69	-2.2
3,777,192	+		PFLU_RS16655	0.76	+0.4
3,777,192	+		PFLU_RS16655	0.76	-0.3
3,777,192	+		PFLU_RS16655	0.76	+0.4
3,777,193	-		PFLU_RS16655	0.76	-0.1
3,777,193	-		PFLU_RS16655	0.76	-0.1
3,777,221	+		PFLU_RS16655	0.79	-1.8
3,777,390	-				-0.3
3,777,437	-				+2.6