Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS12055

Experiment: L-Arabinose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose (C)
2,677,995	+				+0.7
2,677,995	+				-0.5
2,677,996	-				-3.7
2,677,996	-				+1.1
2,677,996	-				-2.9
2,678,019	+				-0.4
2,678,020	-				+1.4
2,678,020	-				+0.1
2,678,020	-				+1.9
2,678,185	-		PFLU_RS12045	0.51	-2.1
2,678,207	+		PFLU_RS12045	0.56	-1.5
2,678,207	+		PFLU_RS12045	0.56	+1.3
2,678,208	-		PFLU_RS12045	0.57	-1.7
2,678,208	-		PFLU_RS12045	0.57	-0.8
2,678,208	-		PFLU_RS12045	0.57	-3.3
2,678,268	+		PFLU_RS12045	0.72	+0.6
2,678,268	+		PFLU_RS12045	0.72	+0.6
2,678,269	-		PFLU_RS12045	0.73	-0.9
2,678,347	+				+0.7
2,678,398	+		PFLU_RS12050	0.12	-0.9
2,678,398	+		PFLU_RS12050	0.12	-0.3
2,678,398	+		PFLU_RS12050	0.12	+1.3
2,678,399	-		PFLU_RS12050	0.13	-0.3
2,678,445	+		PFLU_RS12050	0.32	-2.1
2,678,446	-		PFLU_RS12050	0.33	-2.0
2,678,446	-		PFLU_RS12050	0.33	-2.6
2,678,446	-		PFLU_RS12050	0.33	+1.0
2,678,446	-		PFLU_RS12050	0.33	+0.8
2,678,446	-		PFLU_RS12050	0.33	+0.7
2,678,454	+		PFLU_RS12050	0.36	+0.5
2,678,454	+		PFLU_RS12050	0.36	+2.2
2,678,454	+		PFLU_RS12050	0.36	-2.4
2,678,454	+		PFLU_RS12050	0.36	-0.1
2,678,454	+		PFLU_RS12050	0.36	+0.5
2,678,454	+		PFLU_RS12050	0.36	-2.0
2,678,454	+		PFLU_RS12050	0.36	+2.3
2,678,455	-		PFLU_RS12050	0.36	-0.9
2,678,455	-		PFLU_RS12050	0.36	+2.1
2,678,455	-		PFLU_RS12050	0.36	-0.9
2,678,529	+		PFLU_RS12050	0.67	-0.5
2,678,529	+		PFLU_RS12050	0.67	+0.3
2,678,530	-		PFLU_RS12050	0.68	-0.1
2,678,602	-				+1.2
2,678,634	+				-1.6
2,678,634	+				-2.2
2,678,715	-				-0.4
2,678,770	+				-0.1
2,678,770	+				-0.1
2,678,770	+				+0.7
2,678,770	+				-1.9
2,678,771	-				-1.1
2,678,771	-				+0.9
2,678,771	-				+0.9
2,678,771	-				-0.4
2,678,771	-				-0.9
2,678,771	-				-1.7
2,678,771	-				-0.1
2,678,785	+				+1.0
2,678,785	+				-0.0
2,678,785	+				-1.1
2,678,786	-				-1.4
2,678,812	+				-2.4
2,678,812	+				-1.5
2,678,812	+				+2.3
2,678,812	+				-0.1
2,678,812	+				-2.5
2,678,812	+				-1.1
2,678,812	+				+1.6
2,678,813	-				-0.9
2,678,813	-				+0.5
2,678,816	+				-0.7
2,678,816	+				-1.0
2,678,816	+				+1.0
2,678,816	+				+2.0
2,678,816	+				+0.2
2,678,816	+				+1.6
2,678,816	+				-2.0
2,678,816	+				-0.5
2,678,816	+				+2.3
2,678,816	+				+0.3
2,678,816	+				-0.0
2,678,816	+				+0.3
2,678,816	+				-0.5
2,678,816	+				+2.1
2,678,816	+				-2.5
2,678,816	+				+2.1
2,678,816	+				-0.0
2,678,816	+				-1.7
2,678,817	-				-2.1
2,678,817	-				-2.7
2,678,817	-				-3.1
2,678,817	-				-2.7
2,678,817	-				+1.5
2,678,817	-				+1.3
2,678,817	-				-0.1
2,678,817	-				+0.3
2,678,817	-				-2.0
2,678,834	+				-0.4
2,678,835	-				-2.2
2,678,842	-				-0.7
2,678,900	+				+1.7
2,678,900	+				-1.2
2,678,930	+				+0.6
2,678,930	+				-0.4
2,678,930	+				+0.5
2,678,931	-				-1.9
2,678,931	-				+2.0
2,678,931	-				+0.6
2,679,009	+		PFLU_RS12055	0.13	-0.5
2,679,009	+		PFLU_RS12055	0.13	-0.9
2,679,010	-		PFLU_RS12055	0.13	+0.8
2,679,010	-		PFLU_RS12055	0.13	-3.2
2,679,023	+		PFLU_RS12055	0.15	-0.6
2,679,024	-		PFLU_RS12055	0.15	+3.0
2,679,024	-		PFLU_RS12055	0.15	+0.2
2,679,024	-		PFLU_RS12055	0.15	+1.2
2,679,024	-		PFLU_RS12055	0.15	-0.1
2,679,165	+		PFLU_RS12055	0.30	+0.9
2,679,165	+		PFLU_RS12055	0.30	-1.1
2,679,165	+		PFLU_RS12055	0.30	-2.1
2,679,165	+		PFLU_RS12055	0.30	+0.2
2,679,165	+		PFLU_RS12055	0.30	-0.1
2,679,165	+		PFLU_RS12055	0.30	+0.6
2,679,165	+		PFLU_RS12055	0.30	+1.7
2,679,165	+		PFLU_RS12055	0.30	-0.1
2,679,166	-		PFLU_RS12055	0.30	-0.1
2,679,166	-		PFLU_RS12055	0.30	-1.0
2,679,166	-		PFLU_RS12055	0.30	+1.3
2,679,166	-		PFLU_RS12055	0.30	+2.8
2,679,166	-		PFLU_RS12055	0.30	-0.2
2,679,167	+		PFLU_RS12055	0.30	-2.3
2,679,168	-		PFLU_RS12055	0.30	-0.9
2,679,168	-		PFLU_RS12055	0.30	+0.0
2,679,230	+		PFLU_RS12055	0.37	-2.5
2,679,230	+		PFLU_RS12055	0.37	+1.1
2,679,230	+		PFLU_RS12055	0.37	+1.9
2,679,293	+		PFLU_RS12055	0.44	-1.6
2,679,413	+		PFLU_RS12055	0.56	+0.1
2,679,413	+		PFLU_RS12055	0.56	-2.2
2,679,413	+		PFLU_RS12055	0.56	+0.9
2,679,413	+		PFLU_RS12055	0.56	+1.5
2,679,413	+		PFLU_RS12055	0.56	+1.4
2,679,413	+		PFLU_RS12055	0.56	-0.1
2,679,413	+		PFLU_RS12055	0.56	-2.7
2,679,413	+		PFLU_RS12055	0.56	+1.0
2,679,413	+		PFLU_RS12055	0.56	-2.9
2,679,414	-		PFLU_RS12055	0.56	+0.8
2,679,414	-		PFLU_RS12055	0.56	+0.2
2,679,414	-		PFLU_RS12055	0.56	+1.2
2,679,414	-		PFLU_RS12055	0.56	+2.5
2,679,414	-		PFLU_RS12055	0.56	+0.2
2,679,414	-		PFLU_RS12055	0.56	-1.4
2,679,414	-		PFLU_RS12055	0.56	-0.3
2,679,656	+		PFLU_RS12055	0.82	+1.1
2,679,656	+		PFLU_RS12055	0.82	+1.5
2,679,661	+		PFLU_RS12055	0.83	+2.5
2,679,661	+		PFLU_RS12055	0.83	+0.9
2,679,661	+		PFLU_RS12055	0.83	-0.0
2,679,661	+		PFLU_RS12055	0.83	-1.9
2,679,661	+		PFLU_RS12055	0.83	+0.3
2,679,661	+		PFLU_RS12055	0.83	-0.9
2,679,662	-		PFLU_RS12055	0.83	+0.5
2,679,662	-		PFLU_RS12055	0.83	+0.5
2,679,662	-		PFLU_RS12055	0.83	+1.1
2,679,662	-		PFLU_RS12055	0.83	-0.2
2,679,662	-		PFLU_RS12055	0.83	+1.5
2,679,694	+		PFLU_RS12055	0.86	-1.1
2,679,694	+		PFLU_RS12055	0.86	-0.4
2,679,694	+		PFLU_RS12055	0.86	+0.6
2,679,695	-		PFLU_RS12055	0.87	+1.6
2,679,695	-		PFLU_RS12055	0.87	-3.5
2,679,695	-		PFLU_RS12055	0.87	-0.2
2,679,896	+				+0.6
2,679,937	+				+0.2
2,679,937	+				-2.2
2,679,937	+				+0.8
2,679,937	+				+1.0
2,679,937	+				+1.3
2,679,937	+				+0.6
2,679,937	+				+0.0
2,679,937	+				+0.5
2,679,937	+				-2.0
2,679,937	+				-0.5
2,679,937	+				+0.1
2,679,937	+				+0.1
2,679,937	+				-0.2
2,679,937	+				-2.5
2,679,937	+				+1.6
2,679,937	+				-0.9
2,679,937	+				+0.6
2,679,937	+				-0.3
2,679,937	+				+1.0
2,679,937	+				+1.4
2,679,937	+				+2.8
2,679,937	+				+1.2
2,679,937	+				+1.5
2,679,937	+				-1.4
2,679,937	+				-2.0
2,679,937	+				+0.6
2,679,937	+				-2.4
2,679,937	+				+0.9
2,679,937	+				-3.1
2,679,937	+				+1.1
2,679,937	+				+1.8
2,679,937	+				-1.5
2,679,937	+				-0.5
2,679,937	+				-0.7
2,679,937	+				-0.7
2,679,937	+				-0.9
2,679,937	+				+1.1
2,679,937	+				-1.4
2,679,938	-				+1.2
2,679,938	-				-0.1
2,679,938	-				+1.7
2,679,938	-				+0.5
2,679,938	-				-0.5
2,679,938	-				+1.7
2,679,938	-				+0.7
2,679,938	-				-2.0
2,679,938	-				+0.3
2,679,938	-				+0.1
2,679,938	-				-3.1
2,679,938	-				+1.0
2,679,938	-				+0.5
2,679,938	-				-1.5
2,679,938	-				+0.1
2,679,938	-				-1.4
2,679,938	-				-1.3
2,679,938	-				-0.7
2,679,938	-				-2.7
2,679,938	-				-2.1
2,679,938	-				+1.3
2,679,938	-				+1.5
2,679,938	-				-1.8
2,679,938	-				-2.2
2,679,938	-				+1.5
2,679,938	-				+0.5
2,679,938	-				+2.3
2,679,938	-				-1.9
2,679,938	-				+1.1
2,679,938	-				+0.2
2,679,938	-				+0.5
2,679,938	-				+0.1
2,679,938	-				-0.1
2,679,938	-				+1.3
2,679,938	-				+1.4
2,679,938	-				-1.1
2,679,938	-				-2.0
2,679,938	-				+0.7
2,679,938	-				+0.8
2,680,089	+		PFLU_RS12060	0.31	-0.0
2,680,090	-		PFLU_RS12060	0.31	-2.6
2,680,090	-		PFLU_RS12060	0.31	+1.9
2,680,226	+		PFLU_RS12060	0.59	-0.1
2,680,226	+		PFLU_RS12060	0.59	+0.5
2,680,226	+		PFLU_RS12060	0.59	-2.1
2,680,226	+		PFLU_RS12060	0.59	+2.6
2,680,226	+		PFLU_RS12060	0.59	-0.0
2,680,226	+		PFLU_RS12060	0.59	+1.6
2,680,227	-		PFLU_RS12060	0.59	-1.1
2,680,364	-		PFLU_RS12060	0.87	+0.2
2,680,447	+				-3.0
2,680,522	+		PFLU_RS12065	0.20	-3.2
2,680,528	+		PFLU_RS12065	0.21	+1.5
2,680,528	+		PFLU_RS12065	0.21	+0.2
2,680,528	+		PFLU_RS12065	0.21	-1.1
2,680,528	+		PFLU_RS12065	0.21	-2.5
2,680,529	-		PFLU_RS12065	0.22	+2.0
2,680,529	-		PFLU_RS12065	0.22	-1.2
2,680,529	-		PFLU_RS12065	0.22	+0.6
2,680,529	-		PFLU_RS12065	0.22	-2.0
2,680,529	-		PFLU_RS12065	0.22	-0.0
2,680,529	-		PFLU_RS12065	0.22	+1.1
2,680,571	+		PFLU_RS12065	0.31	-2.6
2,680,668	+		PFLU_RS12065	0.52	+1.3
2,680,668	+		PFLU_RS12065	0.52	-3.0
2,680,668	+		PFLU_RS12065	0.52	+0.6
2,680,668	+		PFLU_RS12065	0.52	+1.3
2,680,669	-		PFLU_RS12065	0.53	-0.4
2,680,669	-		PFLU_RS12065	0.53	+1.7
2,680,669	-		PFLU_RS12065	0.53	-0.3
2,680,669	-		PFLU_RS12065	0.53	-0.3
2,680,669	-		PFLU_RS12065	0.53	-0.4
2,680,669	-		PFLU_RS12065	0.53	+0.1
2,680,669	-		PFLU_RS12065	0.53	+0.6
2,680,669	-		PFLU_RS12065	0.53	-0.7