Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS10680

Experiment: L-Arabinose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose (C)
2,351,506	+		PFLU_RS10670	0.79	+2.8
2,351,506	+		PFLU_RS10670	0.79	+1.2
2,351,506	+		PFLU_RS10670	0.79	+0.2
2,351,507	-		PFLU_RS10670	0.79	+1.6
2,351,507	-		PFLU_RS10670	0.79	+1.3
2,351,507	-		PFLU_RS10670	0.79	+0.5
2,351,507	-		PFLU_RS10670	0.79	-2.2
2,351,507	-		PFLU_RS10670	0.79	-1.2
2,351,518	+		PFLU_RS10670	0.80	+0.0
2,351,518	+		PFLU_RS10670	0.80	-0.4
2,351,519	-		PFLU_RS10670	0.80	-1.1
2,351,710	+				+1.3
2,351,764	+				+1.2
2,351,764	+				-0.1
2,351,783	+				-1.6
2,351,799	+				+0.2
2,351,799	+				-0.7
2,351,800	-				+0.3
2,351,800	-				+0.5
2,351,800	-				+1.2
2,351,805	+				-2.6
2,351,805	+				+1.3
2,351,806	-				+2.3
2,351,806	-				+2.2
2,351,852	+				+1.0
2,351,853	-				+0.6
2,351,944	+		PFLU_RS10675	0.19	-2.1
2,351,945	-		PFLU_RS10675	0.19	-1.2
2,351,945	-		PFLU_RS10675	0.19	-0.3
2,352,010	+		PFLU_RS10675	0.30	+0.4
2,352,010	+		PFLU_RS10675	0.30	-1.6
2,352,010	+		PFLU_RS10675	0.30	+0.9
2,352,010	+		PFLU_RS10675	0.30	-2.0
2,352,011	-		PFLU_RS10675	0.30	-0.5
2,352,011	-		PFLU_RS10675	0.30	+0.0
2,352,011	-		PFLU_RS10675	0.30	-3.0
2,352,011	-		PFLU_RS10675	0.30	+0.9
2,352,011	-		PFLU_RS10675	0.30	-3.4
2,352,011	-		PFLU_RS10675	0.30	+1.0
2,352,011	-		PFLU_RS10675	0.30	+0.2
2,352,011	-		PFLU_RS10675	0.30	+0.9
2,352,055	+		PFLU_RS10675	0.37	-1.2
2,352,055	+		PFLU_RS10675	0.37	+0.3
2,352,056	-		PFLU_RS10675	0.37	-1.8
2,352,056	-		PFLU_RS10675	0.37	-2.2
2,352,209	-		PFLU_RS10675	0.62	-2.5
2,352,209	-		PFLU_RS10675	0.62	+1.0
2,352,223	+		PFLU_RS10675	0.64	-0.7
2,352,223	+		PFLU_RS10675	0.64	+3.6
2,352,223	+		PFLU_RS10675	0.64	-0.4
2,352,223	+		PFLU_RS10675	0.64	+2.6
2,352,223	+		PFLU_RS10675	0.64	-0.0
2,352,223	+		PFLU_RS10675	0.64	-1.0
2,352,223	+		PFLU_RS10675	0.64	-0.4
2,352,224	-		PFLU_RS10675	0.64	+0.3
2,352,224	-		PFLU_RS10675	0.64	+1.7
2,352,224	-		PFLU_RS10675	0.64	-3.1
2,352,224	-		PFLU_RS10675	0.64	-0.4
2,352,224	-		PFLU_RS10675	0.64	+0.6
2,352,242	-		PFLU_RS10675	0.67	+0.6
2,352,247	+		PFLU_RS10675	0.68	-0.2
2,352,247	+		PFLU_RS10675	0.68	-1.6
2,352,248	-		PFLU_RS10675	0.68	+0.4
2,352,248	-		PFLU_RS10675	0.68	+0.4
2,352,266	-		PFLU_RS10675	0.71	-1.4
2,352,274	+		PFLU_RS10675	0.72	-1.0
2,352,274	+		PFLU_RS10675	0.72	+1.9
2,352,275	-		PFLU_RS10675	0.73	-0.2
2,352,310	+		PFLU_RS10675	0.78	+0.7
2,352,310	+		PFLU_RS10675	0.78	+1.8
2,352,310	+		PFLU_RS10675	0.78	+0.3
2,352,310	+		PFLU_RS10675	0.78	-2.3
2,352,311	-		PFLU_RS10675	0.78	+0.2
2,352,311	-		PFLU_RS10675	0.78	+1.0
2,352,370	+		PFLU_RS10675	0.88	+0.0
2,352,370	+		PFLU_RS10675	0.88	-1.0
2,352,370	+		PFLU_RS10675	0.88	-1.7
2,352,370	+		PFLU_RS10675	0.88	+1.2
2,352,370	+		PFLU_RS10675	0.88	+0.9
2,352,370	+		PFLU_RS10675	0.88	+0.8
2,352,370	+		PFLU_RS10675	0.88	+1.8
2,352,370	+		PFLU_RS10675	0.88	-0.7
2,352,370	+		PFLU_RS10675	0.88	-0.3
2,352,370	+		PFLU_RS10675	0.88	+0.3
2,352,370	+		PFLU_RS10675	0.88	-1.4
2,352,370	+		PFLU_RS10675	0.88	-2.4
2,352,370	+		PFLU_RS10675	0.88	-1.0
2,352,370	+		PFLU_RS10675	0.88	-2.0
2,352,370	+		PFLU_RS10675	0.88	-0.1
2,352,370	+		PFLU_RS10675	0.88	+1.0
2,352,371	-		PFLU_RS10675	0.88	+0.4
2,352,371	-		PFLU_RS10675	0.88	-3.0
2,352,371	-		PFLU_RS10675	0.88	+0.7
2,352,371	-		PFLU_RS10675	0.88	-0.6
2,352,371	-		PFLU_RS10675	0.88	+1.2
2,352,371	-		PFLU_RS10675	0.88	-1.1
2,352,371	-		PFLU_RS10675	0.88	+1.6
2,352,371	-		PFLU_RS10675	0.88	+0.6
2,352,371	-		PFLU_RS10675	0.88	+0.4
2,352,383	-				-1.3
2,352,393	+				+0.4
2,352,393	+				-1.0
2,352,393	+				+1.4
2,352,393	+				-0.0
2,352,393	+				-0.1
2,352,394	-				-2.2
2,352,394	-				+0.6
2,352,498	+				+1.7
2,352,499	-				-0.5
2,352,499	-				+1.1
2,352,499	-				+0.3
2,352,499	-				-0.0
2,352,510	-				+0.8
2,352,519	-				-4.2
2,352,519	-				+1.0
2,352,530	+				+1.5
2,352,531	-				-1.6
2,352,531	-				+0.6
2,352,531	-				+0.0
2,352,541	+				-1.0
2,352,565	+				+1.0
2,352,565	+				+1.2
2,352,565	+				-2.0
2,352,565	+				+2.2
2,352,566	-				-0.6
2,352,566	-				+0.8
2,352,566	-				-1.8
2,352,566	-				+0.4
2,352,566	-				-0.8
2,352,566	-				-0.3
2,352,569	+				+1.8
2,352,569	+				+1.6
2,352,569	+				-1.3
2,352,569	+				-1.6
2,352,569	+				-0.1
2,352,569	+				-1.2
2,352,569	+				-0.4
2,352,569	+				+1.4
2,352,570	-				+2.7
2,352,570	-				-0.7
2,352,570	-				-2.9
2,352,570	-				-0.1
2,352,570	-				-1.6
2,352,570	-				-0.6
2,352,570	-				-1.8
2,352,571	+				+0.5
2,352,571	+				-1.2
2,352,572	-				-2.3
2,352,572	-				-2.8
2,352,573	+				-1.4
2,352,573	+				+1.4
2,352,573	+				-1.2
2,352,573	+				+0.0
2,352,573	+				-1.1
2,352,573	+				-2.5
2,352,573	+				+0.6
2,352,573	+				-0.6
2,352,573	+				-0.0
2,352,573	+				+0.2
2,352,573	+				+0.7
2,352,574	-				+1.0
2,352,574	-				+0.8
2,352,574	-				-0.4
2,352,574	-				-2.9
2,352,574	-				-2.1
2,352,574	-				+0.0
2,352,574	-				+0.7
2,352,574	-				-0.4
2,352,574	-				-1.7
2,352,574	-				+2.9
2,352,587	+				-0.9
2,352,587	+				+0.6
2,352,673	+		PFLU_RS10680	0.17	-0.7
2,352,673	+		PFLU_RS10680	0.17	-3.3
2,352,673	+		PFLU_RS10680	0.17	-3.2
2,352,673	+		PFLU_RS10680	0.17	-0.6
2,352,674	-		PFLU_RS10680	0.17	-0.5
2,352,674	-		PFLU_RS10680	0.17	+0.6
2,352,674	-		PFLU_RS10680	0.17	-2.0
2,352,674	-		PFLU_RS10680	0.17	-0.6
2,352,674	-		PFLU_RS10680	0.17	+0.7
2,352,674	-		PFLU_RS10680	0.17	+1.7
2,352,674	-		PFLU_RS10680	0.17	+0.2
2,352,689	+		PFLU_RS10680	0.19	+0.5
2,352,689	+		PFLU_RS10680	0.19	-2.2
2,352,689	+		PFLU_RS10680	0.19	-2.6
2,352,689	+		PFLU_RS10680	0.19	+1.8
2,352,690	-		PFLU_RS10680	0.19	+1.3
2,352,690	-		PFLU_RS10680	0.19	+0.1
2,352,690	-		PFLU_RS10680	0.19	-2.7
2,352,690	-		PFLU_RS10680	0.19	-0.2
2,352,723	+		PFLU_RS10680	0.22	-3.4
2,352,723	+		PFLU_RS10680	0.22	+0.7
2,352,723	+		PFLU_RS10680	0.22	-3.1
2,352,724	-		PFLU_RS10680	0.22	-2.5
2,352,724	-		PFLU_RS10680	0.22	+0.7
2,352,724	-		PFLU_RS10680	0.22	-2.3
2,352,724	-		PFLU_RS10680	0.22	-0.5
2,352,724	-		PFLU_RS10680	0.22	-0.6
2,352,724	-		PFLU_RS10680	0.22	-0.4
2,352,724	-		PFLU_RS10680	0.22	-0.3
2,352,724	-		PFLU_RS10680	0.22	+3.9
2,352,724	-		PFLU_RS10680	0.22	-1.6
2,352,724	-		PFLU_RS10680	0.22	+0.0
2,352,724	-		PFLU_RS10680	0.22	-2.1
2,352,724	-		PFLU_RS10680	0.22	+1.0
2,352,724	-		PFLU_RS10680	0.22	-2.6
2,352,724	-		PFLU_RS10680	0.22	+1.2
2,352,724	-		PFLU_RS10680	0.22	-2.3
2,352,858	+		PFLU_RS10680	0.35	+1.0
2,352,858	+		PFLU_RS10680	0.35	-0.5
2,352,859	-		PFLU_RS10680	0.35	-0.9
2,352,859	-		PFLU_RS10680	0.35	-0.1
2,352,859	-		PFLU_RS10680	0.35	-0.0
2,352,859	-		PFLU_RS10680	0.35	+0.9
2,352,863	+		PFLU_RS10680	0.35	-1.7
2,352,863	+		PFLU_RS10680	0.35	+0.1
2,352,863	+		PFLU_RS10680	0.35	+0.0
2,352,863	+		PFLU_RS10680	0.35	+0.2
2,352,864	-		PFLU_RS10680	0.35	+1.6
2,352,866	+		PFLU_RS10680	0.36	-0.4
2,352,867	-		PFLU_RS10680	0.36	-0.0
2,352,867	-		PFLU_RS10680	0.36	+0.8
2,352,959	+		PFLU_RS10680	0.45	-1.0
2,352,967	-		PFLU_RS10680	0.45	-3.4
2,352,967	-		PFLU_RS10680	0.45	+0.7
2,352,970	+		PFLU_RS10680	0.46	-1.7
2,353,008	+		PFLU_RS10680	0.49	+2.6
2,353,008	+		PFLU_RS10680	0.49	+1.8
2,353,008	+		PFLU_RS10680	0.49	+0.7
2,353,008	+		PFLU_RS10680	0.49	-1.6
2,353,009	-		PFLU_RS10680	0.49	-1.8
2,353,009	-		PFLU_RS10680	0.49	+1.4
2,353,009	-		PFLU_RS10680	0.49	-2.6
2,353,036	+		PFLU_RS10680	0.52	+1.9
2,353,037	-		PFLU_RS10680	0.52	+0.5
2,353,046	+		PFLU_RS10680	0.53	-1.1
2,353,046	+		PFLU_RS10680	0.53	-1.4
2,353,046	+		PFLU_RS10680	0.53	-0.3
2,353,046	+		PFLU_RS10680	0.53	-1.0
2,353,047	-		PFLU_RS10680	0.53	+0.7
2,353,047	-		PFLU_RS10680	0.53	+1.2
2,353,047	-		PFLU_RS10680	0.53	+0.1
2,353,047	-		PFLU_RS10680	0.53	-0.6
2,353,047	-		PFLU_RS10680	0.53	-1.7
2,353,047	-		PFLU_RS10680	0.53	+2.2
2,353,047	-		PFLU_RS10680	0.53	-0.4
2,353,055	+		PFLU_RS10680	0.54	+0.0
2,353,056	-		PFLU_RS10680	0.54	-0.1
2,353,056	-		PFLU_RS10680	0.54	+0.8
2,353,056	-		PFLU_RS10680	0.54	-0.5
2,353,109	+		PFLU_RS10680	0.59	-0.2
2,353,109	+		PFLU_RS10680	0.59	-1.6
2,353,110	-		PFLU_RS10680	0.59	-0.6
2,353,110	-		PFLU_RS10680	0.59	+0.8
2,353,147	+		PFLU_RS10680	0.63	+0.7
2,353,147	+		PFLU_RS10680	0.63	-1.2
2,353,147	+		PFLU_RS10680	0.63	+0.2
2,353,147	+		PFLU_RS10680	0.63	-1.8
2,353,147	+		PFLU_RS10680	0.63	-1.9
2,353,147	+		PFLU_RS10680	0.63	+2.1
2,353,148	-		PFLU_RS10680	0.63	+1.6
2,353,148	-		PFLU_RS10680	0.63	+0.5
2,353,148	-		PFLU_RS10680	0.63	-2.1
2,353,148	-		PFLU_RS10680	0.63	+0.6
2,353,148	-		PFLU_RS10680	0.63	-0.0
2,353,148	-		PFLU_RS10680	0.63	-2.0
2,353,148	-		PFLU_RS10680	0.63	-1.3
2,353,295	+		PFLU_RS10680	0.77	+0.0
2,353,295	+		PFLU_RS10680	0.77	-3.3
2,353,295	+		PFLU_RS10680	0.77	+0.9
2,353,295	+		PFLU_RS10680	0.77	+0.0
2,353,295	+		PFLU_RS10680	0.77	-0.8
2,353,295	+		PFLU_RS10680	0.77	-1.6
2,353,296	-		PFLU_RS10680	0.77	-1.8
2,353,296	-		PFLU_RS10680	0.77	-3.0
2,353,296	-		PFLU_RS10680	0.77	+0.1
2,353,296	-		PFLU_RS10680	0.77	-2.2
2,353,296	-		PFLU_RS10680	0.77	+0.6
2,353,296	-		PFLU_RS10680	0.77	+1.6
2,353,296	-		PFLU_RS10680	0.77	+0.3
2,353,388	-		PFLU_RS10680	0.86	+0.8
2,353,388	-		PFLU_RS10680	0.86	-1.6
2,353,388	-		PFLU_RS10680	0.86	-0.4
2,353,416	+		PFLU_RS10680	0.89	-1.7
2,353,417	-		PFLU_RS10680	0.89	+0.6
2,353,417	-		PFLU_RS10680	0.89	+1.2
2,353,458	+				+1.3
2,353,458	+				+2.2
2,353,458	+				+0.3
2,353,458	+				+0.8
2,353,458	+				+1.6
2,353,459	-				+0.1
2,353,459	-				+0.6
2,353,459	-				-0.5
2,353,459	-				+1.7
2,353,466	+				+2.0
2,353,466	+				-1.6
2,353,466	+				+0.7
2,353,467	-				-0.7
2,353,467	-				+0.5
2,353,467	-				+2.6
2,353,488	-				+0.1
2,353,589	+				+1.0
2,353,589	+				-0.1
2,353,590	-				+0.3
2,353,590	-				+0.5
2,353,590	-				+0.6
2,353,730	+				+1.3
2,353,730	+				-2.2
2,353,730	+				-0.0
2,353,740	+				+1.4
2,353,740	+				-0.6
2,353,740	+				-2.7
2,353,740	+				-0.9
2,353,740	+				-0.1
2,353,740	+				+0.0
2,353,741	-				-1.4
2,353,741	-				-0.2
2,353,741	-				+1.5
2,353,741	-				-1.0
2,353,846	+		PFLU_RS10685	0.18	-1.2
2,353,898	+		PFLU_RS10685	0.24	-0.2
2,353,950	+		PFLU_RS10685	0.30	-0.2
2,353,950	+		PFLU_RS10685	0.30	-2.2
2,353,979	+		PFLU_RS10685	0.33	-2.6
2,353,979	+		PFLU_RS10685	0.33	+2.9
2,353,979	+		PFLU_RS10685	0.33	-0.2
2,353,980	-		PFLU_RS10685	0.33	-0.1
2,354,037	+		PFLU_RS10685	0.40	+1.6
2,354,052	+		PFLU_RS10685	0.41	+1.1
2,354,052	+		PFLU_RS10685	0.41	+3.2
2,354,053	-		PFLU_RS10685	0.42	+0.0
2,354,053	-		PFLU_RS10685	0.42	+0.6
2,354,103	+		PFLU_RS10685	0.47	-1.7
2,354,216	+		PFLU_RS10685	0.60	-3.1
2,354,242	+		PFLU_RS10685	0.63	+0.6
2,354,242	+		PFLU_RS10685	0.63	-0.7
2,354,242	+		PFLU_RS10685	0.63	-1.0
2,354,243	-		PFLU_RS10685	0.63	-0.8
2,354,243	-		PFLU_RS10685	0.63	+0.4
2,354,243	-		PFLU_RS10685	0.63	+0.3
2,354,271	+		PFLU_RS10685	0.66	+0.4
2,354,272	-		PFLU_RS10685	0.66	+2.0
2,354,278	+		PFLU_RS10685	0.67	+0.0
2,354,279	-		PFLU_RS10685	0.67	-1.2
2,354,303	+		PFLU_RS10685	0.70	+0.1
2,354,304	-		PFLU_RS10685	0.70	-1.2
2,354,329	+		PFLU_RS10685	0.73	+2.4
2,354,493	+				+0.0