Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS08180

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS30525 and PFLU_RS30530 overlap by 4 nucleotidesPFLU_RS30530 and PFLU_RS08180 are separated by 3 nucleotidesPFLU_RS08180 and PFLU_RS08185 are separated by 48 nucleotides PFLU_RS30525: PFLU_RS30525 - SDR family oxidoreductase, at 1,827,250 to 1,828,008 _RS30525 PFLU_RS30530: PFLU_RS30530 - acetyltransferase, at 1,828,005 to 1,828,670 _RS30530 PFLU_RS08180: PFLU_RS08180 - ketoacyl-ACP synthase III, at 1,828,674 to 1,829,690 _RS08180 PFLU_RS08185: PFLU_RS08185 - DegT/DnrJ/EryC1/StrS aminotransferase family protein, at 1,829,739 to 1,830,917 _RS08185 Position (kb) 1828 1829 1830Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1827.767 kb on + strand, within PFLU_RS30525at 1827.773 kb on + strand, within PFLU_RS30525at 1827.773 kb on + strand, within PFLU_RS30525at 1827.774 kb on - strand, within PFLU_RS30525at 1827.774 kb on - strand, within PFLU_RS30525at 1827.774 kb on - strand, within PFLU_RS30525at 1827.875 kb on + strand, within PFLU_RS30525at 1827.897 kb on - strand, within PFLU_RS30525at 1827.920 kb on + strand, within PFLU_RS30525at 1827.921 kb on - strand, within PFLU_RS30525at 1827.921 kb on - strand, within PFLU_RS30525at 1827.921 kb on - strand, within PFLU_RS30525at 1827.925 kb on + strand, within PFLU_RS30525at 1827.926 kb on - strand, within PFLU_RS30525at 1827.933 kb on + strandat 1827.934 kb on - strandat 1827.937 kb on + strandat 1827.937 kb on + strandat 1827.938 kb on - strandat 1827.938 kb on - strandat 1827.938 kb on - strandat 1827.938 kb on - strandat 1827.980 kb on + strandat 1827.980 kb on + strandat 1827.981 kb on - strandat 1827.981 kb on - strandat 1828.024 kb on + strandat 1828.028 kb on - strandat 1828.028 kb on - strandat 1828.028 kb on - strandat 1828.028 kb on - strandat 1828.100 kb on + strand, within PFLU_RS30530at 1828.101 kb on - strand, within PFLU_RS30530at 1828.101 kb on - strand, within PFLU_RS30530at 1828.101 kb on - strand, within PFLU_RS30530at 1828.107 kb on - strand, within PFLU_RS30530at 1828.118 kb on + strand, within PFLU_RS30530at 1828.166 kb on + strand, within PFLU_RS30530at 1828.187 kb on + strand, within PFLU_RS30530at 1828.188 kb on - strand, within PFLU_RS30530at 1828.188 kb on - strand, within PFLU_RS30530at 1828.227 kb on - strand, within PFLU_RS30530at 1828.230 kb on + strand, within PFLU_RS30530at 1828.230 kb on + strand, within PFLU_RS30530at 1828.230 kb on + strand, within PFLU_RS30530at 1828.231 kb on - strand, within PFLU_RS30530at 1828.231 kb on - strand, within PFLU_RS30530at 1828.237 kb on + strand, within PFLU_RS30530at 1828.238 kb on - strand, within PFLU_RS30530at 1828.343 kb on + strand, within PFLU_RS30530at 1828.370 kb on + strand, within PFLU_RS30530at 1828.413 kb on - strand, within PFLU_RS30530at 1828.426 kb on + strand, within PFLU_RS30530at 1828.476 kb on - strand, within PFLU_RS30530at 1828.553 kb on + strand, within PFLU_RS30530at 1828.559 kb on + strand, within PFLU_RS30530at 1828.564 kb on + strand, within PFLU_RS30530at 1828.564 kb on + strand, within PFLU_RS30530at 1828.565 kb on - strand, within PFLU_RS30530at 1828.578 kb on + strand, within PFLU_RS30530at 1828.578 kb on + strand, within PFLU_RS30530at 1828.604 kb on - strandat 1828.693 kb on + strandat 1828.708 kb on - strandat 1828.708 kb on - strandat 1828.725 kb on - strandat 1828.803 kb on - strand, within PFLU_RS08180at 1828.910 kb on + strand, within PFLU_RS08180at 1828.915 kb on + strand, within PFLU_RS08180at 1828.915 kb on + strand, within PFLU_RS08180at 1828.916 kb on - strand, within PFLU_RS08180at 1828.916 kb on - strand, within PFLU_RS08180at 1828.916 kb on - strand, within PFLU_RS08180at 1828.916 kb on - strand, within PFLU_RS08180at 1828.935 kb on + strand, within PFLU_RS08180at 1828.936 kb on - strand, within PFLU_RS08180at 1828.958 kb on + strand, within PFLU_RS08180at 1828.958 kb on + strand, within PFLU_RS08180at 1828.959 kb on - strand, within PFLU_RS08180at 1829.031 kb on - strand, within PFLU_RS08180at 1829.051 kb on + strand, within PFLU_RS08180at 1829.052 kb on - strand, within PFLU_RS08180at 1829.059 kb on + strand, within PFLU_RS08180at 1829.119 kb on - strand, within PFLU_RS08180at 1829.119 kb on - strand, within PFLU_RS08180at 1829.179 kb on + strand, within PFLU_RS08180at 1829.349 kb on - strand, within PFLU_RS08180at 1829.357 kb on + strand, within PFLU_RS08180at 1829.563 kb on + strand, within PFLU_RS08180at 1829.659 kb on - strandat 1829.694 kb on + strandat 1829.751 kb on - strandat 1829.816 kb on + strandat 1829.819 kb on + strandat 1829.915 kb on + strand, within PFLU_RS08185at 1829.915 kb on + strand, within PFLU_RS08185at 1829.916 kb on - strand, within PFLU_RS08185at 1829.933 kb on - strand, within PFLU_RS08185at 1829.933 kb on - strand, within PFLU_RS08185at 1829.978 kb on + strand, within PFLU_RS08185at 1829.995 kb on + strand, within PFLU_RS08185at 1830.016 kb on + strand, within PFLU_RS08185at 1830.016 kb on + strand, within PFLU_RS08185at 1830.017 kb on - strand, within PFLU_RS08185at 1830.035 kb on + strand, within PFLU_RS08185at 1830.037 kb on + strand, within PFLU_RS08185at 1830.073 kb on + strand, within PFLU_RS08185at 1830.073 kb on + strand, within PFLU_RS08185at 1830.074 kb on - strand, within PFLU_RS08185at 1830.110 kb on + strand, within PFLU_RS08185at 1830.110 kb on + strand, within PFLU_RS08185at 1830.192 kb on - strand, within PFLU_RS08185at 1830.227 kb on + strand, within PFLU_RS08185at 1830.231 kb on + strand, within PFLU_RS08185at 1830.231 kb on + strand, within PFLU_RS08185at 1830.231 kb on + strand, within PFLU_RS08185at 1830.231 kb on + strand, within PFLU_RS08185at 1830.231 kb on + strand, within PFLU_RS08185at 1830.231 kb on + strand, within PFLU_RS08185at 1830.231 kb on + strand, within PFLU_RS08185at 1830.231 kb on + strand, within PFLU_RS08185at 1830.231 kb on + strand, within PFLU_RS08185at 1830.231 kb on + strand, within PFLU_RS08185at 1830.231 kb on + strand, within PFLU_RS08185at 1830.231 kb on + strand, within PFLU_RS08185at 1830.231 kb on + strand, within PFLU_RS08185at 1830.232 kb on - strand, within PFLU_RS08185at 1830.232 kb on - strand, within PFLU_RS08185at 1830.232 kb on - strand, within PFLU_RS08185at 1830.232 kb on - strand, within PFLU_RS08185at 1830.232 kb on - strand, within PFLU_RS08185at 1830.232 kb on - strand, within PFLU_RS08185at 1830.232 kb on - strand, within PFLU_RS08185at 1830.232 kb on - strand, within PFLU_RS08185at 1830.232 kb on - strand, within PFLU_RS08185at 1830.232 kb on - strand, within PFLU_RS08185at 1830.232 kb on - strand, within PFLU_RS08185at 1830.232 kb on - strand, within PFLU_RS08185at 1830.248 kb on - strand, within PFLU_RS08185at 1830.290 kb on + strand, within PFLU_RS08185at 1830.290 kb on + strand, within PFLU_RS08185at 1830.290 kb on + strand, within PFLU_RS08185at 1830.291 kb on - strand, within PFLU_RS08185at 1830.291 kb on - strand, within PFLU_RS08185at 1830.291 kb on - strand, within PFLU_RS08185at 1830.366 kb on + strand, within PFLU_RS08185at 1830.366 kb on + strand, within PFLU_RS08185at 1830.366 kb on + strand, within PFLU_RS08185at 1830.366 kb on + strand, within PFLU_RS08185at 1830.367 kb on - strand, within PFLU_RS08185at 1830.367 kb on - strand, within PFLU_RS08185at 1830.367 kb on - strand, within PFLU_RS08185at 1830.367 kb on - strand, within PFLU_RS08185at 1830.367 kb on - strand, within PFLU_RS08185at 1830.367 kb on - strand, within PFLU_RS08185at 1830.367 kb on - strand, within PFLU_RS08185at 1830.369 kb on - strand, within PFLU_RS08185at 1830.369 kb on - strand, within PFLU_RS08185at 1830.369 kb on - strand, within PFLU_RS08185at 1830.399 kb on + strand, within PFLU_RS08185at 1830.400 kb on - strand, within PFLU_RS08185at 1830.400 kb on - strand, within PFLU_RS08185at 1830.400 kb on - strand, within PFLU_RS08185at 1830.484 kb on + strand, within PFLU_RS08185at 1830.524 kb on - strand, within PFLU_RS08185at 1830.524 kb on - strand, within PFLU_RS08185at 1830.600 kb on - strand, within PFLU_RS08185at 1830.600 kb on - strand, within PFLU_RS08185at 1830.621 kb on + strand, within PFLU_RS08185at 1830.624 kb on - strand, within PFLU_RS08185at 1830.624 kb on - strand, within PFLU_RS08185at 1830.624 kb on - strand, within PFLU_RS08185at 1830.656 kb on - strand, within PFLU_RS08185

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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1,827,767 + PFLU_RS30525 0.68 +0.4
1,827,773 + PFLU_RS30525 0.69 -2.1
1,827,773 + PFLU_RS30525 0.69 -2.3
1,827,774 - PFLU_RS30525 0.69 +2.2
1,827,774 - PFLU_RS30525 0.69 +0.5
1,827,774 - PFLU_RS30525 0.69 +1.3
1,827,875 + PFLU_RS30525 0.82 -0.6
1,827,897 - PFLU_RS30525 0.85 -1.8
1,827,920 + PFLU_RS30525 0.88 -1.1
1,827,921 - PFLU_RS30525 0.88 -0.6
1,827,921 - PFLU_RS30525 0.88 +1.9
1,827,921 - PFLU_RS30525 0.88 -0.3
1,827,925 + PFLU_RS30525 0.89 -2.5
1,827,926 - PFLU_RS30525 0.89 -0.2
1,827,933 + -0.4
1,827,934 - +0.9
1,827,937 + -2.8
1,827,937 + -1.4
1,827,938 - -0.1
1,827,938 - +2.5
1,827,938 - -1.5
1,827,938 - +1.2
1,827,980 + -1.9
1,827,980 + +0.4
1,827,981 - -0.2
1,827,981 - -1.9
1,828,024 + -0.9
1,828,028 - -0.9
1,828,028 - +2.4
1,828,028 - +0.4
1,828,028 - +0.4
1,828,100 + PFLU_RS30530 0.14 -0.6
1,828,101 - PFLU_RS30530 0.14 +1.9
1,828,101 - PFLU_RS30530 0.14 -0.6
1,828,101 - PFLU_RS30530 0.14 +0.4
1,828,107 - PFLU_RS30530 0.15 -0.4
1,828,118 + PFLU_RS30530 0.17 -2.1
1,828,166 + PFLU_RS30530 0.24 -1.4
1,828,187 + PFLU_RS30530 0.27 +0.4
1,828,188 - PFLU_RS30530 0.27 +0.4
1,828,188 - PFLU_RS30530 0.27 -1.5
1,828,227 - PFLU_RS30530 0.33 -1.2
1,828,230 + PFLU_RS30530 0.34 -1.6
1,828,230 + PFLU_RS30530 0.34 -3.1
1,828,230 + PFLU_RS30530 0.34 -2.0
1,828,231 - PFLU_RS30530 0.34 -2.5
1,828,231 - PFLU_RS30530 0.34 -0.9
1,828,237 + PFLU_RS30530 0.35 +1.4
1,828,238 - PFLU_RS30530 0.35 +1.9
1,828,343 + PFLU_RS30530 0.51 -2.4
1,828,370 + PFLU_RS30530 0.55 +0.4
1,828,413 - PFLU_RS30530 0.61 -0.4
1,828,426 + PFLU_RS30530 0.63 -1.2
1,828,476 - PFLU_RS30530 0.71 -0.1
1,828,553 + PFLU_RS30530 0.82 -1.1
1,828,559 + PFLU_RS30530 0.83 -2.1
1,828,564 + PFLU_RS30530 0.84 +0.4
1,828,564 + PFLU_RS30530 0.84 +0.4
1,828,565 - PFLU_RS30530 0.84 -1.5
1,828,578 + PFLU_RS30530 0.86 -3.0
1,828,578 + PFLU_RS30530 0.86 -1.9
1,828,604 - -0.3
1,828,693 + +1.4
1,828,708 - +1.4
1,828,708 - +0.4
1,828,725 - +1.5
1,828,803 - PFLU_RS08180 0.13 -2.0
1,828,910 + PFLU_RS08180 0.23 -1.2
1,828,915 + PFLU_RS08180 0.24 -2.2
1,828,915 + PFLU_RS08180 0.24 -2.7
1,828,916 - PFLU_RS08180 0.24 -0.6
1,828,916 - PFLU_RS08180 0.24 -2.2
1,828,916 - PFLU_RS08180 0.24 -2.0
1,828,916 - PFLU_RS08180 0.24 +0.7
1,828,935 + PFLU_RS08180 0.26 -0.9
1,828,936 - PFLU_RS08180 0.26 -0.6
1,828,958 + PFLU_RS08180 0.28 -1.2
1,828,958 + PFLU_RS08180 0.28 -0.3
1,828,959 - PFLU_RS08180 0.28 +2.7
1,829,031 - PFLU_RS08180 0.35 +0.9
1,829,051 + PFLU_RS08180 0.37 -2.1
1,829,052 - PFLU_RS08180 0.37 -1.5
1,829,059 + PFLU_RS08180 0.38 +0.4
1,829,119 - PFLU_RS08180 0.44 +1.9
1,829,119 - PFLU_RS08180 0.44 +0.7
1,829,179 + PFLU_RS08180 0.50 -0.9
1,829,349 - PFLU_RS08180 0.66 -0.0
1,829,357 + PFLU_RS08180 0.67 +2.6
1,829,563 + PFLU_RS08180 0.87 -0.4
1,829,659 - +1.5
1,829,694 + -3.0
1,829,751 - -2.8
1,829,816 + +0.4
1,829,819 + -2.0
1,829,915 + PFLU_RS08185 0.15 -0.1
1,829,915 + PFLU_RS08185 0.15 -0.6
1,829,916 - PFLU_RS08185 0.15 +1.9
1,829,933 - PFLU_RS08185 0.16 +0.4
1,829,933 - PFLU_RS08185 0.16 +0.9
1,829,978 + PFLU_RS08185 0.20 +1.0
1,829,995 + PFLU_RS08185 0.22 -1.1
1,830,016 + PFLU_RS08185 0.23 +2.3
1,830,016 + PFLU_RS08185 0.23 +1.5
1,830,017 - PFLU_RS08185 0.24 +0.2
1,830,035 + PFLU_RS08185 0.25 +1.1
1,830,037 + PFLU_RS08185 0.25 +2.4
1,830,073 + PFLU_RS08185 0.28 -1.8
1,830,073 + PFLU_RS08185 0.28 -0.9
1,830,074 - PFLU_RS08185 0.28 +4.5
1,830,110 + PFLU_RS08185 0.31 +1.2
1,830,110 + PFLU_RS08185 0.31 -1.1
1,830,192 - PFLU_RS08185 0.38 -0.4
1,830,227 + PFLU_RS08185 0.41 -0.6
1,830,231 + PFLU_RS08185 0.42 +0.8
1,830,231 + PFLU_RS08185 0.42 +1.9
1,830,231 + PFLU_RS08185 0.42 -0.4
1,830,231 + PFLU_RS08185 0.42 -0.4
1,830,231 + PFLU_RS08185 0.42 +2.0
1,830,231 + PFLU_RS08185 0.42 -0.4
1,830,231 + PFLU_RS08185 0.42 +1.3
1,830,231 + PFLU_RS08185 0.42 -1.2
1,830,231 + PFLU_RS08185 0.42 -2.5
1,830,231 + PFLU_RS08185 0.42 +2.9
1,830,231 + PFLU_RS08185 0.42 +1.9
1,830,231 + PFLU_RS08185 0.42 +2.1
1,830,231 + PFLU_RS08185 0.42 -1.1
1,830,232 - PFLU_RS08185 0.42 -0.6
1,830,232 - PFLU_RS08185 0.42 -1.1
1,830,232 - PFLU_RS08185 0.42 -0.1
1,830,232 - PFLU_RS08185 0.42 +1.6
1,830,232 - PFLU_RS08185 0.42 +2.8
1,830,232 - PFLU_RS08185 0.42 +1.2
1,830,232 - PFLU_RS08185 0.42 -1.9
1,830,232 - PFLU_RS08185 0.42 -0.1
1,830,232 - PFLU_RS08185 0.42 +0.4
1,830,232 - PFLU_RS08185 0.42 -1.1
1,830,232 - PFLU_RS08185 0.42 -1.1
1,830,232 - PFLU_RS08185 0.42 +1.7
1,830,248 - PFLU_RS08185 0.43 +0.5
1,830,290 + PFLU_RS08185 0.47 +0.4
1,830,290 + PFLU_RS08185 0.47 +0.9
1,830,290 + PFLU_RS08185 0.47 -0.4
1,830,291 - PFLU_RS08185 0.47 +1.5
1,830,291 - PFLU_RS08185 0.47 +0.2
1,830,291 - PFLU_RS08185 0.47 -0.9
1,830,366 + PFLU_RS08185 0.53 +1.9
1,830,366 + PFLU_RS08185 0.53 +0.4
1,830,366 + PFLU_RS08185 0.53 -0.4
1,830,366 + PFLU_RS08185 0.53 -1.5
1,830,367 - PFLU_RS08185 0.53 -1.9
1,830,367 - PFLU_RS08185 0.53 -0.1
1,830,367 - PFLU_RS08185 0.53 -0.5
1,830,367 - PFLU_RS08185 0.53 +0.9
1,830,367 - PFLU_RS08185 0.53 +2.2
1,830,367 - PFLU_RS08185 0.53 -0.9
1,830,367 - PFLU_RS08185 0.53 +0.4
1,830,369 - PFLU_RS08185 0.53 -1.4
1,830,369 - PFLU_RS08185 0.53 -0.1
1,830,369 - PFLU_RS08185 0.53 -0.5
1,830,399 + PFLU_RS08185 0.56 +0.9
1,830,400 - PFLU_RS08185 0.56 -1.2
1,830,400 - PFLU_RS08185 0.56 +1.2
1,830,400 - PFLU_RS08185 0.56 +0.4
1,830,484 + PFLU_RS08185 0.63 -2.0
1,830,524 - PFLU_RS08185 0.67 -1.8
1,830,524 - PFLU_RS08185 0.67 +1.4
1,830,600 - PFLU_RS08185 0.73 -1.2
1,830,600 - PFLU_RS08185 0.73 +1.9
1,830,621 + PFLU_RS08185 0.75 -0.1
1,830,624 - PFLU_RS08185 0.75 -0.6
1,830,624 - PFLU_RS08185 0.75 +1.4
1,830,624 - PFLU_RS08185 0.75 -1.2
1,830,656 - PFLU_RS08185 0.78 +1.9

Or see this region's nucleotide sequence