Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS07820

Experiment: L-Arabinose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose (C)
1,739,056	+		PFLU_RS07815	0.45	-0.3
1,739,056	+		PFLU_RS07815	0.45	-0.8
1,739,056	+		PFLU_RS07815	0.45	+0.3
1,739,057	-		PFLU_RS07815	0.45	+0.4
1,739,064	+		PFLU_RS07815	0.46	-0.8
1,739,064	+		PFLU_RS07815	0.46	+0.5
1,739,064	+		PFLU_RS07815	0.46	-2.7
1,739,065	-		PFLU_RS07815	0.46	-1.4
1,739,065	-		PFLU_RS07815	0.46	-0.6
1,739,065	-		PFLU_RS07815	0.46	+1.8
1,739,125	+		PFLU_RS07815	0.51	+0.5
1,739,125	+		PFLU_RS07815	0.51	+0.8
1,739,126	-		PFLU_RS07815	0.51	+1.0
1,739,163	+		PFLU_RS07815	0.54	+0.4
1,739,163	+		PFLU_RS07815	0.54	-0.6
1,739,163	+		PFLU_RS07815	0.54	-1.7
1,739,163	+		PFLU_RS07815	0.54	+0.2
1,739,163	+		PFLU_RS07815	0.54	+2.8
1,739,163	+		PFLU_RS07815	0.54	+0.2
1,739,163	+		PFLU_RS07815	0.54	+0.6
1,739,163	+		PFLU_RS07815	0.54	-1.0
1,739,164	-		PFLU_RS07815	0.54	-2.0
1,739,164	-		PFLU_RS07815	0.54	-0.6
1,739,164	-		PFLU_RS07815	0.54	-0.0
1,739,197	-		PFLU_RS07815	0.57	+0.6
1,739,216	+		PFLU_RS07815	0.59	+0.2
1,739,217	-		PFLU_RS07815	0.59	+0.1
1,739,317	+		PFLU_RS07815	0.68	-0.4
1,739,317	+		PFLU_RS07815	0.68	-1.2
1,739,317	+		PFLU_RS07815	0.68	-1.6
1,739,318	-		PFLU_RS07815	0.68	+0.5
1,739,318	-		PFLU_RS07815	0.68	-0.2
1,739,318	-		PFLU_RS07815	0.68	-1.9
1,739,318	-		PFLU_RS07815	0.68	-2.0
1,739,384	-		PFLU_RS07815	0.74	+0.5
1,739,384	-		PFLU_RS07815	0.74	-1.8
1,739,560	+		PFLU_RS07815	0.89	+2.5
1,739,561	-		PFLU_RS07815	0.89	+0.8
1,739,561	-		PFLU_RS07815	0.89	+1.8
1,739,561	-		PFLU_RS07815	0.89	+1.0
1,739,590	+				-1.6
1,739,590	+				+1.6
1,739,590	+				+0.4
1,739,590	+				+1.1
1,739,590	+				+1.5
1,739,591	-				+1.7
1,739,591	-				+1.1
1,739,618	+				-0.0
1,739,695	+		PFLU_RS31250	0.36	+0.1
1,739,695	+		PFLU_RS31250	0.36	-1.6
1,739,695	+		PFLU_RS31250	0.36	+0.9
1,739,696	-		PFLU_RS31250	0.37	-2.2
1,739,696	-		PFLU_RS31250	0.37	-2.0
1,739,705	-		PFLU_RS31250	0.47	-0.2
1,739,705	-		PFLU_RS31250	0.47	-2.4
1,739,705	-		PFLU_RS31250	0.47	-3.6
1,739,705	-		PFLU_RS31250	0.47	-2.5
1,739,733	+		PFLU_RS31250	0.78	+0.3
1,739,733	+		PFLU_RS31250	0.78	+1.8
1,739,733	+		PFLU_RS31250	0.78	-2.4
1,739,733	+		PFLU_RS31250	0.78	-0.0
1,739,734	-		PFLU_RS31250	0.79	-0.0
1,739,734	-		PFLU_RS31250	0.79	+2.2
1,739,734	-		PFLU_RS31250	0.79	+0.7
1,739,734	-		PFLU_RS31250	0.79	-0.5
1,739,793	+				-1.8
1,739,932	+		PFLU_RS07820	0.19	+1.2
1,739,932	+		PFLU_RS07820	0.19	-0.1
1,739,933	-		PFLU_RS07820	0.19	+0.4
1,739,933	-		PFLU_RS07820	0.19	-2.0
1,739,933	-		PFLU_RS07820	0.19	-0.8
1,739,933	-		PFLU_RS07820	0.19	-1.2
1,739,933	-		PFLU_RS07820	0.19	-0.8
1,739,933	-		PFLU_RS07820	0.19	-3.4
1,739,933	-		PFLU_RS07820	0.19	-1.8
1,739,933	-		PFLU_RS07820	0.19	-3.3
1,739,933	-		PFLU_RS07820	0.19	+1.6
1,739,949	+		PFLU_RS07820	0.21	+3.7
1,739,949	+		PFLU_RS07820	0.21	+1.9
1,739,949	+		PFLU_RS07820	0.21	+1.8
1,739,949	+		PFLU_RS07820	0.21	-1.6
1,739,949	+		PFLU_RS07820	0.21	+0.4
1,739,949	+		PFLU_RS07820	0.21	-0.8
1,739,949	+		PFLU_RS07820	0.21	-1.7
1,739,949	+		PFLU_RS07820	0.21	+1.0
1,739,950	-		PFLU_RS07820	0.21	-0.5
1,740,007	-		PFLU_RS07820	0.27	+2.4
1,740,107	+		PFLU_RS07820	0.38	+1.0
1,740,107	+		PFLU_RS07820	0.38	-2.0
1,740,366	+		PFLU_RS07820	0.67	-0.2
1,740,367	-		PFLU_RS07820	0.67	-1.6
1,740,439	+		PFLU_RS07820	0.75	-2.0
1,740,440	-		PFLU_RS07820	0.76	+1.6
1,740,624	+				+0.6
1,740,625	-				+0.5
1,740,625	-				-1.3
1,740,633	+				+0.6
1,740,633	+				-2.0
1,740,633	+				-1.8
1,740,633	+				+1.2
1,740,634	-				+0.1
1,740,634	-				+0.1
1,740,634	-				-1.1
1,740,634	-				+2.1
1,740,634	-				+1.1
1,740,760	-				+0.9
1,740,902	+		PFLU_RS07825	0.23	+1.4
1,740,902	+		PFLU_RS07825	0.23	-0.1
1,740,902	+		PFLU_RS07825	0.23	-3.2
1,740,903	-		PFLU_RS07825	0.23	+1.4
1,740,903	-		PFLU_RS07825	0.23	-1.7
1,740,903	-		PFLU_RS07825	0.23	-2.6
1,741,251	+		PFLU_RS07825	0.62	+2.7
1,741,251	+		PFLU_RS07825	0.62	-2.5
1,741,251	+		PFLU_RS07825	0.62	-0.4
1,741,251	+		PFLU_RS07825	0.62	-0.0
1,741,252	-		PFLU_RS07825	0.62	-0.4
1,741,377	+		PFLU_RS07825	0.77	+0.5
1,741,377	+		PFLU_RS07825	0.77	-2.9
1,741,378	-		PFLU_RS07825	0.77	-1.6
1,741,414	+		PFLU_RS07825	0.81	-1.2
1,741,414	+		PFLU_RS07825	0.81	+0.4
1,741,414	+		PFLU_RS07825	0.81	-1.8
1,741,414	+		PFLU_RS07825	0.81	+1.4
1,741,414	+		PFLU_RS07825	0.81	+1.7
1,741,415	-		PFLU_RS07825	0.81	+0.9
1,741,415	-		PFLU_RS07825	0.81	+3.7
1,741,415	-		PFLU_RS07825	0.81	+1.4
1,741,415	-		PFLU_RS07825	0.81	+0.1
1,741,415	-		PFLU_RS07825	0.81	-0.4
1,741,415	-		PFLU_RS07825	0.81	+1.0
1,741,440	+		PFLU_RS07825	0.84	+0.8
1,741,440	+		PFLU_RS07825	0.84	-0.4
1,741,440	+		PFLU_RS07825	0.84	+0.8
1,741,441	-		PFLU_RS07825	0.84	-1.3
1,741,441	-		PFLU_RS07825	0.84	+1.5
1,741,441	-		PFLU_RS07825	0.84	+1.3
1,741,441	-		PFLU_RS07825	0.84	-1.4
1,741,441	-		PFLU_RS07825	0.84	+0.6
1,741,441	-		PFLU_RS07825	0.84	+1.8
1,741,441	-		PFLU_RS07825	0.84	+0.0
1,741,455	+		PFLU_RS07825	0.85	+0.6
1,741,456	-		PFLU_RS07825	0.86	+0.4
1,741,456	-		PFLU_RS07825	0.86	-0.6
1,741,456	-		PFLU_RS07825	0.86	-2.6
1,741,456	-		PFLU_RS07825	0.86	+1.7