Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS06370

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS06365 and PFLU_RS06370 are separated by 5 nucleotidesPFLU_RS06370 and PFLU_RS06375 are separated by 157 nucleotides PFLU_RS06365: PFLU_RS06365 - CTP synthase, at 1,427,223 to 1,428,854 _RS06365 PFLU_RS06370: PFLU_RS06370 - 3-deoxy-8-phosphooctulonate synthase, at 1,428,860 to 1,429,705 _RS06370 PFLU_RS06375: PFLU_RS06375 - phosphopyruvate hydratase, at 1,429,863 to 1,431,152 _RS06375 Position (kb) 1428 1429 1430Strain fitness (log2 ratio) -2 -1 0 1at 1429.726 kb on + strandat 1429.727 kb on - strandat 1429.736 kb on + strandat 1429.737 kb on - strandat 1429.737 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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1,429,726 + +0.7
1,429,727 - -0.5
1,429,736 + +0.1
1,429,737 - -0.5
1,429,737 - -1.9

Or see this region's nucleotide sequence