Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS03290 and PFLU_RS03295 are separated by 137 nucleotides PFLU_RS03295 and PFLU_RS03300 are separated by 193 nucleotides PFLU_RS03300 and PFLU_RS03305 are separated by 49 nucleotides
PFLU_RS03290: PFLU_RS03290 - calcium:proton antiporter, at 757,634 to 758,725
_RS03290
PFLU_RS03295: PFLU_RS03295 - 8-oxoguanine deaminase, at 758,863 to 760,221
_RS03295
PFLU_RS03300: PFLU_RS03300 - SDR family oxidoreductase, at 760,415 to 761,101
_RS03300
PFLU_RS03305: PFLU_RS03305 - YigZ family protein, at 761,151 to 761,732
_RS03305
Position (kb) 758
759
760
761 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 757.906 kb on + strand, within PFLU_RS03290 at 757.907 kb on - strand, within PFLU_RS03290 at 757.907 kb on - strand, within PFLU_RS03290 at 757.943 kb on + strand, within PFLU_RS03290 at 757.943 kb on + strand, within PFLU_RS03290 at 757.943 kb on + strand, within PFLU_RS03290 at 757.944 kb on - strand, within PFLU_RS03290 at 757.944 kb on - strand, within PFLU_RS03290 at 757.944 kb on - strand, within PFLU_RS03290 at 757.944 kb on - strand, within PFLU_RS03290 at 757.944 kb on - strand, within PFLU_RS03290 at 758.024 kb on + strand, within PFLU_RS03290 at 758.024 kb on + strand, within PFLU_RS03290 at 758.024 kb on + strand, within PFLU_RS03290 at 758.024 kb on + strand, within PFLU_RS03290 at 758.024 kb on + strand, within PFLU_RS03290 at 758.025 kb on - strand, within PFLU_RS03290 at 758.025 kb on - strand, within PFLU_RS03290 at 758.048 kb on + strand, within PFLU_RS03290 at 758.048 kb on + strand, within PFLU_RS03290 at 758.048 kb on + strand, within PFLU_RS03290 at 758.048 kb on + strand, within PFLU_RS03290 at 758.048 kb on + strand, within PFLU_RS03290 at 758.048 kb on + strand, within PFLU_RS03290 at 758.048 kb on + strand, within PFLU_RS03290 at 758.048 kb on + strand, within PFLU_RS03290 at 758.049 kb on - strand, within PFLU_RS03290 at 758.049 kb on - strand, within PFLU_RS03290 at 758.049 kb on - strand, within PFLU_RS03290 at 758.049 kb on - strand, within PFLU_RS03290 at 758.049 kb on - strand, within PFLU_RS03290 at 758.049 kb on - strand, within PFLU_RS03290 at 758.049 kb on - strand, within PFLU_RS03290 at 758.049 kb on - strand, within PFLU_RS03290 at 758.049 kb on - strand, within PFLU_RS03290 at 758.101 kb on + strand, within PFLU_RS03290 at 758.162 kb on + strand, within PFLU_RS03290 at 758.162 kb on + strand, within PFLU_RS03290 at 758.163 kb on - strand, within PFLU_RS03290 at 758.163 kb on - strand, within PFLU_RS03290 at 758.163 kb on - strand, within PFLU_RS03290 at 758.163 kb on - strand, within PFLU_RS03290 at 758.163 kb on - strand, within PFLU_RS03290 at 758.163 kb on - strand, within PFLU_RS03290 at 758.163 kb on - strand, within PFLU_RS03290 at 758.201 kb on + strand, within PFLU_RS03290 at 758.202 kb on - strand, within PFLU_RS03290 at 758.213 kb on + strand, within PFLU_RS03290 at 758.213 kb on + strand, within PFLU_RS03290 at 758.213 kb on + strand, within PFLU_RS03290 at 758.213 kb on + strand, within PFLU_RS03290 at 758.213 kb on + strand, within PFLU_RS03290 at 758.214 kb on - strand, within PFLU_RS03290 at 758.214 kb on - strand, within PFLU_RS03290 at 758.214 kb on - strand, within PFLU_RS03290 at 758.371 kb on + strand, within PFLU_RS03290 at 758.414 kb on - strand, within PFLU_RS03290 at 758.486 kb on - strand, within PFLU_RS03290 at 758.552 kb on + strand, within PFLU_RS03290 at 758.552 kb on + strand, within PFLU_RS03290 at 758.553 kb on - strand, within PFLU_RS03290 at 758.553 kb on - strand, within PFLU_RS03290 at 758.699 kb on - strand at 758.796 kb on + strand at 758.796 kb on + strand at 758.796 kb on + strand at 758.797 kb on - strand at 758.797 kb on - strand at 758.797 kb on - strand at 758.797 kb on - strand at 758.802 kb on + strand at 758.802 kb on + strand at 758.802 kb on + strand at 758.802 kb on + strand at 758.802 kb on + strand at 758.803 kb on - strand at 758.803 kb on - strand at 758.803 kb on - strand at 758.803 kb on - strand at 758.803 kb on - strand at 758.803 kb on - strand at 758.803 kb on - strand at 758.814 kb on + strand at 758.814 kb on + strand at 758.815 kb on - strand at 758.864 kb on + strand at 758.864 kb on + strand at 758.865 kb on - strand at 758.865 kb on - strand at 759.119 kb on - strand, within PFLU_RS03295 at 759.119 kb on - strand, within PFLU_RS03295 at 759.151 kb on + strand, within PFLU_RS03295 at 759.151 kb on + strand, within PFLU_RS03295 at 759.151 kb on + strand, within PFLU_RS03295 at 759.151 kb on + strand, within PFLU_RS03295 at 759.151 kb on + strand, within PFLU_RS03295 at 759.151 kb on + strand, within PFLU_RS03295 at 759.151 kb on + strand, within PFLU_RS03295 at 759.151 kb on + strand, within PFLU_RS03295 at 759.152 kb on - strand, within PFLU_RS03295 at 759.152 kb on - strand, within PFLU_RS03295 at 759.152 kb on - strand, within PFLU_RS03295 at 759.182 kb on + strand, within PFLU_RS03295 at 759.183 kb on - strand, within PFLU_RS03295 at 759.187 kb on + strand, within PFLU_RS03295 at 759.188 kb on - strand, within PFLU_RS03295 at 759.188 kb on - strand, within PFLU_RS03295 at 759.188 kb on - strand, within PFLU_RS03295 at 759.200 kb on + strand, within PFLU_RS03295 at 759.200 kb on + strand, within PFLU_RS03295 at 759.200 kb on + strand, within PFLU_RS03295 at 759.200 kb on + strand, within PFLU_RS03295 at 759.200 kb on + strand, within PFLU_RS03295 at 759.200 kb on + strand, within PFLU_RS03295 at 759.200 kb on + strand, within PFLU_RS03295 at 759.200 kb on + strand, within PFLU_RS03295 at 759.200 kb on + strand, within PFLU_RS03295 at 759.200 kb on + strand, within PFLU_RS03295 at 759.201 kb on - strand, within PFLU_RS03295 at 759.201 kb on - strand, within PFLU_RS03295 at 759.201 kb on - strand, within PFLU_RS03295 at 759.201 kb on - strand, within PFLU_RS03295 at 759.201 kb on - strand, within PFLU_RS03295 at 759.201 kb on - strand, within PFLU_RS03295 at 759.201 kb on - strand, within PFLU_RS03295 at 759.201 kb on - strand, within PFLU_RS03295 at 759.201 kb on - strand, within PFLU_RS03295 at 759.201 kb on - strand, within PFLU_RS03295 at 759.201 kb on - strand, within PFLU_RS03295 at 759.201 kb on - strand, within PFLU_RS03295 at 759.201 kb on - strand, within PFLU_RS03295 at 759.201 kb on - strand, within PFLU_RS03295 at 759.201 kb on - strand, within PFLU_RS03295 at 759.201 kb on - strand, within PFLU_RS03295 at 759.201 kb on - strand, within PFLU_RS03295 at 759.201 kb on - strand, within PFLU_RS03295 at 759.455 kb on + strand, within PFLU_RS03295 at 759.455 kb on + strand, within PFLU_RS03295 at 759.455 kb on + strand, within PFLU_RS03295 at 759.455 kb on + strand, within PFLU_RS03295 at 759.456 kb on - strand, within PFLU_RS03295 at 759.456 kb on - strand, within PFLU_RS03295 at 759.456 kb on - strand, within PFLU_RS03295 at 759.650 kb on + strand, within PFLU_RS03295 at 759.650 kb on + strand, within PFLU_RS03295 at 759.700 kb on + strand, within PFLU_RS03295 at 759.700 kb on + strand, within PFLU_RS03295 at 759.701 kb on - strand, within PFLU_RS03295 at 759.701 kb on - strand, within PFLU_RS03295 at 759.701 kb on - strand, within PFLU_RS03295 at 759.701 kb on - strand, within PFLU_RS03295 at 759.701 kb on - strand, within PFLU_RS03295 at 759.701 kb on - strand, within PFLU_RS03295 at 759.701 kb on - strand, within PFLU_RS03295 at 759.839 kb on + strand, within PFLU_RS03295 at 759.839 kb on + strand, within PFLU_RS03295 at 759.839 kb on + strand, within PFLU_RS03295 at 759.840 kb on - strand, within PFLU_RS03295 at 759.840 kb on - strand, within PFLU_RS03295 at 759.840 kb on - strand, within PFLU_RS03295 at 759.840 kb on - strand, within PFLU_RS03295 at 759.840 kb on - strand, within PFLU_RS03295 at 760.013 kb on + strand, within PFLU_RS03295 at 760.013 kb on + strand, within PFLU_RS03295 at 760.013 kb on + strand, within PFLU_RS03295 at 760.014 kb on - strand, within PFLU_RS03295 at 760.014 kb on - strand, within PFLU_RS03295 at 760.199 kb on - strand at 760.206 kb on + strand at 760.313 kb on - strand at 760.313 kb on - strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.323 kb on + strand at 760.323 kb on + strand at 760.324 kb on - strand at 760.324 kb on - strand at 760.324 kb on - strand at 760.324 kb on - strand at 760.340 kb on + strand at 760.340 kb on + strand at 760.341 kb on - strand at 760.341 kb on - strand at 760.341 kb on - strand at 760.347 kb on - strand at 760.352 kb on + strand at 760.352 kb on + strand at 760.352 kb on + strand at 760.353 kb on - strand at 760.353 kb on - strand at 760.353 kb on - strand at 760.440 kb on + strand at 760.441 kb on - strand at 760.441 kb on - strand at 760.473 kb on + strand at 760.474 kb on - strand at 760.474 kb on - strand at 760.474 kb on - strand at 760.546 kb on - strand, within PFLU_RS03300 at 760.577 kb on + strand, within PFLU_RS03300 at 760.578 kb on - strand, within PFLU_RS03300 at 760.578 kb on - strand, within PFLU_RS03300 at 760.578 kb on - strand, within PFLU_RS03300 at 760.609 kb on + strand, within PFLU_RS03300 at 760.609 kb on + strand, within PFLU_RS03300 at 760.653 kb on + strand, within PFLU_RS03300 at 760.654 kb on - strand, within PFLU_RS03300 at 760.654 kb on - strand, within PFLU_RS03300 at 760.654 kb on - strand, within PFLU_RS03300 at 760.719 kb on - strand, within PFLU_RS03300 at 761.096 kb on - strand at 761.160 kb on + strand at 761.160 kb on + strand at 761.161 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 757,906 + PFLU_RS03290 0.25 -1.5 757,907 - PFLU_RS03290 0.25 -0.5 757,907 - PFLU_RS03290 0.25 -0.8 757,943 + PFLU_RS03290 0.28 -0.3 757,943 + PFLU_RS03290 0.28 +1.5 757,943 + PFLU_RS03290 0.28 -2.0 757,944 - PFLU_RS03290 0.28 -1.8 757,944 - PFLU_RS03290 0.28 +1.2 757,944 - PFLU_RS03290 0.28 -2.7 757,944 - PFLU_RS03290 0.28 -0.2 757,944 - PFLU_RS03290 0.28 +1.1 758,024 + PFLU_RS03290 0.36 +1.5 758,024 + PFLU_RS03290 0.36 -2.2 758,024 + PFLU_RS03290 0.36 -1.7 758,024 + PFLU_RS03290 0.36 -2.0 758,024 + PFLU_RS03290 0.36 +0.3 758,025 - PFLU_RS03290 0.36 +0.9 758,025 - PFLU_RS03290 0.36 -1.9 758,048 + PFLU_RS03290 0.38 +0.4 758,048 + PFLU_RS03290 0.38 +0.9 758,048 + PFLU_RS03290 0.38 +0.9 758,048 + PFLU_RS03290 0.38 -3.8 758,048 + PFLU_RS03290 0.38 +0.5 758,048 + PFLU_RS03290 0.38 +0.9 758,048 + PFLU_RS03290 0.38 -1.1 758,048 + PFLU_RS03290 0.38 +1.3 758,049 - PFLU_RS03290 0.38 -0.3 758,049 - PFLU_RS03290 0.38 -0.0 758,049 - PFLU_RS03290 0.38 +1.8 758,049 - PFLU_RS03290 0.38 +1.5 758,049 - PFLU_RS03290 0.38 +0.2 758,049 - PFLU_RS03290 0.38 -0.9 758,049 - PFLU_RS03290 0.38 +1.3 758,049 - PFLU_RS03290 0.38 +0.9 758,049 - PFLU_RS03290 0.38 -0.8 758,101 + PFLU_RS03290 0.43 -2.1 758,162 + PFLU_RS03290 0.48 -2.4 758,162 + PFLU_RS03290 0.48 -0.1 758,163 - PFLU_RS03290 0.48 +1.0 758,163 - PFLU_RS03290 0.48 +2.5 758,163 - PFLU_RS03290 0.48 -0.4 758,163 - PFLU_RS03290 0.48 -2.3 758,163 - PFLU_RS03290 0.48 -1.4 758,163 - PFLU_RS03290 0.48 -1.3 758,163 - PFLU_RS03290 0.48 +0.6 758,201 + PFLU_RS03290 0.52 +0.2 758,202 - PFLU_RS03290 0.52 -0.7 758,213 + PFLU_RS03290 0.53 -1.5 758,213 + PFLU_RS03290 0.53 +1.9 758,213 + PFLU_RS03290 0.53 -1.3 758,213 + PFLU_RS03290 0.53 +1.3 758,213 + PFLU_RS03290 0.53 +0.4 758,214 - PFLU_RS03290 0.53 -1.1 758,214 - PFLU_RS03290 0.53 -3.6 758,214 - PFLU_RS03290 0.53 +1.2 758,371 + PFLU_RS03290 0.67 -2.3 758,414 - PFLU_RS03290 0.71 -3.7 758,486 - PFLU_RS03290 0.78 +0.5 758,552 + PFLU_RS03290 0.84 +0.9 758,552 + PFLU_RS03290 0.84 -1.7 758,553 - PFLU_RS03290 0.84 -2.6 758,553 - PFLU_RS03290 0.84 -1.1 758,699 - +0.0 758,796 + -1.0 758,796 + -0.7 758,796 + -0.4 758,797 - +0.3 758,797 - -0.7 758,797 - -1.1 758,797 - -0.5 758,802 + +0.3 758,802 + +2.8 758,802 + -1.7 758,802 + -0.9 758,802 + +1.7 758,803 - +0.8 758,803 - +0.1 758,803 - +0.0 758,803 - +0.8 758,803 - +2.3 758,803 - -1.3 758,803 - +0.8 758,814 + +0.8 758,814 + +0.6 758,815 - +3.1 758,864 + -1.6 758,864 + -0.5 758,865 - -1.4 758,865 - -1.7 759,119 - PFLU_RS03295 0.19 +1.2 759,119 - PFLU_RS03295 0.19 -0.4 759,151 + PFLU_RS03295 0.21 +0.0 759,151 + PFLU_RS03295 0.21 +0.6 759,151 + PFLU_RS03295 0.21 +0.1 759,151 + PFLU_RS03295 0.21 -1.3 759,151 + PFLU_RS03295 0.21 +2.1 759,151 + PFLU_RS03295 0.21 -2.4 759,151 + PFLU_RS03295 0.21 -0.1 759,151 + PFLU_RS03295 0.21 -1.2 759,152 - PFLU_RS03295 0.21 -0.1 759,152 - PFLU_RS03295 0.21 +0.1 759,152 - PFLU_RS03295 0.21 +1.6 759,182 + PFLU_RS03295 0.23 +0.8 759,183 - PFLU_RS03295 0.24 +1.4 759,187 + PFLU_RS03295 0.24 +1.8 759,188 - PFLU_RS03295 0.24 +0.2 759,188 - PFLU_RS03295 0.24 +0.2 759,188 - PFLU_RS03295 0.24 +0.4 759,200 + PFLU_RS03295 0.25 +0.3 759,200 + PFLU_RS03295 0.25 -0.5 759,200 + PFLU_RS03295 0.25 -0.6 759,200 + PFLU_RS03295 0.25 +2.1 759,200 + PFLU_RS03295 0.25 -0.1 759,200 + PFLU_RS03295 0.25 -0.1 759,200 + PFLU_RS03295 0.25 +0.6 759,200 + PFLU_RS03295 0.25 -0.2 759,200 + PFLU_RS03295 0.25 -0.1 759,200 + PFLU_RS03295 0.25 +2.1 759,201 - PFLU_RS03295 0.25 -2.1 759,201 - PFLU_RS03295 0.25 -0.8 759,201 - PFLU_RS03295 0.25 +1.3 759,201 - PFLU_RS03295 0.25 +0.8 759,201 - PFLU_RS03295 0.25 +1.1 759,201 - PFLU_RS03295 0.25 -1.2 759,201 - PFLU_RS03295 0.25 -0.0 759,201 - PFLU_RS03295 0.25 -0.5 759,201 - PFLU_RS03295 0.25 -0.7 759,201 - PFLU_RS03295 0.25 +1.1 759,201 - PFLU_RS03295 0.25 -0.5 759,201 - PFLU_RS03295 0.25 -0.8 759,201 - PFLU_RS03295 0.25 -2.1 759,201 - PFLU_RS03295 0.25 -1.6 759,201 - PFLU_RS03295 0.25 +1.1 759,201 - PFLU_RS03295 0.25 -2.0 759,201 - PFLU_RS03295 0.25 +2.3 759,201 - PFLU_RS03295 0.25 -1.2 759,455 + PFLU_RS03295 0.44 +0.8 759,455 + PFLU_RS03295 0.44 -2.3 759,455 + PFLU_RS03295 0.44 +0.3 759,455 + PFLU_RS03295 0.44 -0.7 759,456 - PFLU_RS03295 0.44 +1.5 759,456 - PFLU_RS03295 0.44 +0.2 759,456 - PFLU_RS03295 0.44 +1.1 759,650 + PFLU_RS03295 0.58 +0.7 759,650 + PFLU_RS03295 0.58 +1.8 759,700 + PFLU_RS03295 0.62 -0.8 759,700 + PFLU_RS03295 0.62 +1.0 759,701 - PFLU_RS03295 0.62 -2.5 759,701 - PFLU_RS03295 0.62 -0.2 759,701 - PFLU_RS03295 0.62 -0.5 759,701 - PFLU_RS03295 0.62 +0.2 759,701 - PFLU_RS03295 0.62 -1.7 759,701 - PFLU_RS03295 0.62 -3.1 759,701 - PFLU_RS03295 0.62 +1.8 759,839 + PFLU_RS03295 0.72 -2.6 759,839 + PFLU_RS03295 0.72 -2.0 759,839 + PFLU_RS03295 0.72 +2.9 759,840 - PFLU_RS03295 0.72 +1.2 759,840 - PFLU_RS03295 0.72 -1.3 759,840 - PFLU_RS03295 0.72 +1.9 759,840 - PFLU_RS03295 0.72 -1.0 759,840 - PFLU_RS03295 0.72 -2.8 760,013 + PFLU_RS03295 0.85 +2.7 760,013 + PFLU_RS03295 0.85 -1.3 760,013 + PFLU_RS03295 0.85 -0.5 760,014 - PFLU_RS03295 0.85 -2.1 760,014 - PFLU_RS03295 0.85 -2.2 760,199 - +2.0 760,206 + -1.9 760,313 - +0.2 760,313 - +0.8 760,317 + +0.6 760,317 + +0.5 760,317 + -0.2 760,317 + -0.1 760,317 + +1.8 760,317 + -1.1 760,317 + +1.6 760,317 + -2.3 760,317 + +0.2 760,317 + -0.4 760,317 + +1.2 760,317 + +1.4 760,317 + +2.9 760,317 + -2.3 760,318 - +1.2 760,318 - +0.9 760,318 - +0.3 760,318 - -2.6 760,318 - -0.1 760,318 - +1.5 760,318 - +0.3 760,318 - -0.1 760,318 - -0.7 760,318 - +0.2 760,318 - +0.4 760,323 + -0.2 760,323 + -1.7 760,324 - +1.1 760,324 - -2.3 760,324 - -0.4 760,324 - +0.3 760,340 + +2.3 760,340 + -0.3 760,341 - -2.5 760,341 - +0.1 760,341 - +1.4 760,347 - +0.3 760,352 + -3.2 760,352 + -0.5 760,352 + +0.7 760,353 - -1.8 760,353 - +2.0 760,353 - -1.8 760,440 + -0.6 760,441 - +0.8 760,441 - +1.1 760,473 + -0.3 760,474 - +0.0 760,474 - -0.1 760,474 - +0.8 760,546 - PFLU_RS03300 0.19 -0.1 760,577 + PFLU_RS03300 0.24 +0.9 760,578 - PFLU_RS03300 0.24 +0.5 760,578 - PFLU_RS03300 0.24 -1.7 760,578 - PFLU_RS03300 0.24 +1.5 760,609 + PFLU_RS03300 0.28 +1.3 760,609 + PFLU_RS03300 0.28 -0.2 760,653 + PFLU_RS03300 0.35 +0.3 760,654 - PFLU_RS03300 0.35 -0.9 760,654 - PFLU_RS03300 0.35 -0.1 760,654 - PFLU_RS03300 0.35 -2.9 760,719 - PFLU_RS03300 0.44 +2.0 761,096 - -0.2 761,160 + -0.6 761,160 + +0.5 761,161 - +1.2
Or see this region's nucleotide sequence